mRNA_M-pyrifera_M_contig78782.18509.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78782.18509.1
Unique NamemRNA_M-pyrifera_M_contig78782.18509.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Match: A0A5A8E1Z6_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E1Z6_CAFRO)

HSP 1 Score: 82.8 bits (203), Expect = 1.100e-16
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    7 TLVYLTKAAEENGAKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFTAEDCYSRTSTNLGNTSLLPSTPASSDGVY 240
            T V+LT AA+ +GA CL GTPGAY++RPG   G NK+ IH +GGGWC + EDC  R+ TNLG++S  P+  +   G +
Sbjct:   40 TAVFLTDAAKSDGAVCLDGTPGAYYFRPGL-PGVNKWYIHHQGGGWCESPEDCLGRSKTNLGSSSKYPAKASLGGGYF 116          
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Match: R1EBC1_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EBC1_EMIHU)

HSP 1 Score: 76.6 bits (187), Expect = 4.300e-15
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   10 LVYLTKAAEENGAKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFTAEDCYSRTSTNLGNTSLLPSTPASSDGVY 240
            LV L  AAE  GA+CL GTPGAY+ R G G+GANK+ IH +GGGWC + +DC  R+   LG+++   ST +   G Y
Sbjct:   45 LVKLKAAAETVGARCLDGTPGAYYIRKGAGTGANKWYIHHQGGGWCESLDDCLRRSKGGLGSSTGYASTTSGMGGGY 121          
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Match: A0A7S3U2D8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3U2D8_EMIHU)

HSP 1 Score: 75.1 bits (183), Expect = 7.060e-14
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   10 LVYLTKAAEENGAKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFTAEDCYSRTSTNLGN-TSLLPSTPASSDGVY 240
            LV L  AAE  GA+CL GTPGAY+ R G G+GANK+ IH +GGGWC + +DC  R+   LG+ T   P+T     G +
Sbjct:   45 LVKLKAAAETVGARCLDGTPGAYYIRKGAGTGANKWYIHHQGGGWCESLDDCLRRSKGGLGSSTGYAPTTSGMGGGYF 122          
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Match: A0A2R6XL10_MARPO (Pectin acetylesterase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XL10_MARPO)

HSP 1 Score: 71.2 bits (173), Expect = 1.720e-12
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   25 KAAEENGAKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFTAEDCYSRTSTNLGNTSLLPSTPASSDGVY--GMMSDNESVN 270
            ++A E GA CL G+P AY+   G G GA+K+ +HL GGGWC TA +C  R  T LG++  +P      D +Y  GMMS N +VN
Sbjct:   87 ESAVELGAVCLDGSPPAYYLDRGSGKGADKWIVHLEGGGWCRTAAECLDRAFTQLGSSRYMP------DEIYLGGMMSSNPAVN 164          
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Match: UPI001F5CF365 (pectin acetylesterase 5-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CF365)

HSP 1 Score: 69.3 bits (168), Expect = 8.040e-12
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   19 LTKAAEENGAKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFTAEDCYSRTSTNLGNTSLL 207
            L   A+E GA CL GTP  Y  + G G GANK+ +HL GGGWC T EDC +R  T LG+++ +
Sbjct:   59 LLAGAKEKGAVCLDGTPPGYHLQRGSGDGANKWLVHLEGGGWCSTIEDCSNRRMTALGSSNFM 121          
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Match: A0A1X7TX48_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TX48_AMPQE)

HSP 1 Score: 67.8 bits (164), Expect = 1.260e-11
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   46 AKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFTAEDCYSRTSTNLGNTSLLPST 216
            A CL G+P  Y++RPG GSGANKF +HL GGG C + E+CY R+ T LG++S    T
Sbjct:   33 AVCLDGSPPGYYFRPGTGSGANKFIVHLEGGGDCESKEECYQRSMTRLGSSSYWAKT 89          
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Match: A0A2P6PBD5_ROSCH (Pectin acetylesterase n=4 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PBD5_ROSCH)

HSP 1 Score: 68.2 bits (165), Expect = 1.940e-11
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   13 VYLTKAAEENGAKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFTAEDCYSRTSTNLGNTSLL 207
            + + K A   GA CL G+P AY W  G+GSG N + +H+ GGGWC    +C  RT+T LG++  +
Sbjct:   11 ITILKTAVARGAVCLDGSPPAYHWDKGFGSGVNNWLVHIEGGGWCHNVTNCLGRTNTRLGSSKKM 75          
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Match: A0A4S8K3Y5_MUSBA (Pectin acetylesterase n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8K3Y5_MUSBA)

HSP 1 Score: 67.8 bits (164), Expect = 2.850e-11
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   19 LTKAAEENGAKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFTAEDCYSRTSTNLGNTSLLPSTPASSDGVYG 243
            L + A + GA CL G+P AY + PG+GSG N + +H+ GGGWC   +DC SR  T  G++  +   P S  G+ G
Sbjct:   37 LLEGAVDEGAVCLDGSPPAYHFSPGFGSGMNNWLVHMEGGGWCTNVQDCQSRRDTFRGSSKYMK--PLSFSGILG 109          
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Match: A0A453GXN3_AEGTS (Pectin acetylesterase n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453GXN3_AEGTS)

HSP 1 Score: 65.9 bits (159), Expect = 3.190e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    4 MTLVYLTKAAEENGAKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFTAEDCYSRTSTNLGNTSLL 207
            + L+ LT AA+E GA CL GTP  Y  + G G G++ + IHL+GGGWC T  DC +R  ++LG++  +
Sbjct:   59 VALILLT-AAQEKGAVCLDGTPPGYHLQRGSGDGSSSWHIHLQGGGWCGTVNDCSNRRMSDLGSSKFM 125          
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Match: UPI00098E2A8E (pectin acetylesterase 7-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E2A8E)

HSP 1 Score: 67.0 bits (162), Expect = 5.090e-11
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   31 AEENGAKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFTAEDCYSRTSTNLGNTSLL 207
            AE  GA CL G+P  Y + PG+GSGAN + +H+ GGGWC T E+C  R S   G++ L+
Sbjct:   39 AEAKGAVCLDGSPPVYHFSPGFGSGANNWLVHMEGGGWCSTPEECIDRRSNFRGSSRLM 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78782.18509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E1Z6_CAFRO1.100e-1651.28Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
R1EBC1_EMIHU4.300e-1550.65Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]
A0A7S3U2D8_EMIHU7.060e-1450.00Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A2R6XL10_MARPO1.720e-1246.43Pectin acetylesterase n=2 Tax=Marchantia polymorph... [more]
UPI001F5CF3658.040e-1250.79pectin acetylesterase 5-like n=2 Tax=Lolium rigidu... [more]
A0A1X7TX48_AMPQE1.260e-1154.39Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A2P6PBD5_ROSCH1.940e-1143.08Pectin acetylesterase n=4 Tax=Rosa chinensis TaxID... [more]
A0A4S8K3Y5_MUSBA2.850e-1142.67Pectin acetylesterase n=1 Tax=Musa balbisiana TaxI... [more]
A0A453GXN3_AEGTS3.190e-1145.59Pectin acetylesterase n=2 Tax=Aegilops tauschii su... [more]
UPI00098E2A8E5.090e-1149.15pectin acetylesterase 7-like n=1 Tax=Asparagus off... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78782contigM-pyrifera_M_contig78782:603..872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score79.0
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog81824.XP_001748599.1
Preferred nameSBDS
KEGG koko:K14574
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000922,GO:0001501,GO:0001503,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010467,GO:0015630,GO:0015631,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0019843,GO:0019899,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030282,GO:0030595,GO:0030684,GO:0030687,GO:0031214,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042330,GO:0043009,GO:0043021,GO:0043022,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0048513,GO:0048534,GO:0048539,GO:0048589,GO:0048731,GO:0048856,GO:0048870,GO:0050896,GO:0050900,GO:0051020,GO:0051179,GO:0051674,GO:0051716,GO:0060326,GO:0060348,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363,GO:1902850,GO:1903047,GO:1990904
EggNOG free text desc.mature ribosome assembly
EggNOG OGs38DFK@33154,COG1500@1,KOG2917@2759,KOG4287@1,KOG4287@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size270
Cds size267
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.7416584-UTR-M-pyrifera_M_contig78782:602..6051622816690.7416584-UTR-M-pyrifera_M_contig78782:602..605Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78782 603..605 +
1692278121.9531076-UTR-M-pyrifera_M_contig78782:602..6051692278121.9531076-UTR-M-pyrifera_M_contig78782:602..605Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78782 603..605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.75366-CDS-M-pyrifera_M_contig78782:605..8721622816690.75366-CDS-M-pyrifera_M_contig78782:605..872Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78782 606..872 +
1692278121.9683754-CDS-M-pyrifera_M_contig78782:605..8721692278121.9683754-CDS-M-pyrifera_M_contig78782:605..872Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78782 606..872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78782.18509.1prot_M-pyrifera_M_contig78782.18509.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78782 606..872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78782.18509.1

>prot_M-pyrifera_M_contig78782.18509.1 ID=prot_M-pyrifera_M_contig78782.18509.1|Name=mRNA_M-pyrifera_M_contig78782.18509.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MTLVYLTKAAEENGAKCLSGTPGAYFWRPGWGSGANKFRIHLRGGGWCFT
AEDCYSRTSTNLGNTSLLPSTPASSDGVYGMMSDNESVN
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mRNA from alignment at M-pyrifera_M_contig78782:603..872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78782.18509.1 ID=mRNA_M-pyrifera_M_contig78782.18509.1|Name=mRNA_M-pyrifera_M_contig78782.18509.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig78782:603..872+ (Macrocystis pyrifera P11B4 male)
AATATGACGTTGGTGTATTTGACCAAAGCTGCTGAAGAGAATGGGGCAAA ATGCCTATCAGGAACTCCAGGTGCCTACTTCTGGCGCCCTGGTTGGGGTT CTGGTGCAAATAAGTTTAGAATACACTTACGGGGTGGTGGATGGTGCTTT ACAGCTGAGGATTGTTATTCGAGAACATCCACAAACCTCGGAAACACCTC TTTGCTCCCTTCCACCCCCGCGTCATCGGACGGTGTGTACGGTATGATGA GCGACAATGAGTCTGTGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78782:603..872+

>mRNA_M-pyrifera_M_contig78782.18509.1 ID=mRNA_M-pyrifera_M_contig78782.18509.1|Name=mRNA_M-pyrifera_M_contig78782.18509.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig78782:603..872+ (Macrocystis pyrifera P11B4 male)
ATGACGTTGGTGTATTTGACCAAAGCTGCTGAAGAGAATGGGGCAAAATG
CCTATCAGGAACTCCAGGTGCCTACTTCTGGCGCCCTGGTTGGGGTTCTG
GTGCAAATAAGTTTAGAATACACTTACGGGGTGGTGGATGGTGCTTTACA
GCTGAGGATTGTTATTCGAGAACATCCACAAACCTCGGAAACACCTCTTT
GCTCCCTTCCACCCCCGCGTCATCGGACGGTGTGTACGGTATGATGAGCG
ACAATGAGTCTGTGAATATGACGTTGGTGTATTTGACCAAAGCTGCTGAA
GAGAATGGGGCAAAATGCCTATCAGGAACTCCAGGTGCCTACTTCTGGCG
CCCTGGTTGGGGTTCTGGTGCAAATAAGTTTAGAATACACTTACGGGGTG
GTGGATGGTGCTTTACAGCTGAGGATTGTTATTCGAGAACATCCACAAAC
CTCGGAAACACCTCTTTGCTCCCTTCCACCCCCGCGTCATCGGACGGTGT
GTACGGTATGATGAGCGACAATGAGTCTGTGAAT
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