mRNA_M-pyrifera_M_contig78737.18502.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78737.18502.1
Unique NamemRNA_M-pyrifera_M_contig78737.18502.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Match: A0A482RHV7_9ARCH (AA_TRNA_LIGASE_II domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RHV7_9ARCH)

HSP 1 Score: 191 bits (485), Expect = 1.160e-58
Identity = 92/122 (75.41%), Postives = 101/122 (82.79%), Query Frame = 1 
Query:    1 EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFGKDPT-HGWMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNIRDLFGHKVKFSMLRDTPIVRF 363
            EGVVADY LSLG LIG+IAEFF RIGIT++RFKPAYNPYTEPS+EVFG  P    W E+GN+G FRPEML PMG+P+ V VIAWGLSLERPTMIK+   NIRDLFGHKVKF M R  PIVRF
Sbjct:  162 EGVVADYDLSLGDLIGVIAEFFRRIGITELRFKPAYNPYTEPSMEVFGYHPDLKKWTEIGNSGIFRPEMLRPMGLPENVRVIAWGLSLERPTMIKHRIKNIRDLFGHKVKFDMSRSAPIVRF 283
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BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Match: A0A3P3YKH1_PLABS (Phenylalanine--tRNA ligase n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YKH1_PLABS)

HSP 1 Score: 195 bits (495), Expect = 1.600e-57
Identity = 92/122 (75.41%), Postives = 102/122 (83.61%), Query Frame = 1 
Query:    1 EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFGKDPTHG-WMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNIRDLFGHKVKFSMLRDTPIVRF 363
            EG+VADYGL+LG LIG+IA FF RIGI+ V+FKPAYNPYTEPS+E+FG  P  G WMEVGN+G FRPEML PMG+P GV VIAWGLSLERPTMIKYG +NIRDLFGHKV   M RD PI RF
Sbjct:  412 EGLVADYGLTLGDLIGVIATFFKRIGISDVKFKPAYNPYTEPSMEIFGYSPELGKWMEVGNSGVFRPEMLLPMGLPDGVNVIAWGLSLERPTMIKYGVSNIRDLFGHKVDLRMCRDNPICRF 533
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BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Match: A0A6A7GAE2_9CRUS (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GAE2_9CRUS)

HSP 1 Score: 190 bits (483), Expect = 6.390e-56
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:    1 EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFG-KDPTHGWMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNIRDLFGHKVKFSMLRDTPIVRF 363
            EG VADY LSLG LIG+IA+FF +IGI  V+FKPAYNPYTEPS+EVFG  + T  WMEVGN+G FRPEML PMG P+GV V+AWGLSLERPTMIKYGF NIRDLFGHKV   M+R  PI RF
Sbjct:  393 EGFVADYDLSLGDLIGIIAKFFEKIGIPNVKFKPAYNPYTEPSMEVFGYSEATKTWMEVGNSGIFRPEMLRPMGFPEGVRVVAWGLSLERPTMIKYGFKNIRDLFGHKVDLRMVRQNPIARF 514
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BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Match: Q9CT72_MOUSE (AA_TRNA_LIGASE_II domain-containing protein (Fragment) n=2 Tax=Euarchontoglires TaxID=314146 RepID=Q9CT72_MOUSE)

HSP 1 Score: 178 bits (452), Expect = 2.190e-55
Identity = 81/121 (66.94%), Postives = 99/121 (81.82%), Query Frame = 1 
Query:    1 EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFG-KDPTHGWMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNIRDLFGHKVKFSMLRDTPIVR 360
            EGV AD+GL+LGHL+G++ EFF ++GITQ+RFKPAYNPYTEPS+EVF        W+EVGN+G FRPEML PMG+P+ V+VIAWGLSLERPTMIKYG  NIR+L GHKV   M+ D+P+ R
Sbjct:   19 EGVXADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPVCR 139
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BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Match: K0TQQ6_THAOC (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQQ6_THAOC)

HSP 1 Score: 180 bits (457), Expect = 6.180e-55
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 1 
Query:    1 EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFGKDPT-HGWMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNIRDLFGHKVKFSMLRDTPIVRF 363
            EG+VADY LSLG LIG I  FF +IGITQ+RFKPA+NPYTEPS+EVFG  P    W E+GN+G FRPEMLAPMG+P+ V VIAWGLSLERPTMIKY   NIR+LFGHKV  +M R+ PI RF
Sbjct:  106 EGLVADYNLSLGDLIGTIETFFRKIGITQLRFKPAFNPYTEPSMEVFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPENVRVIAWGLSLERPTMIKYRIDNIRNLFGHKVDLAMTRNAPICRF 227
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BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Match: A0A812RG53_9DINO (Phenylalanine--tRNA ligase n=2 Tax=Sar TaxID=2698737 RepID=A0A812RG53_9DINO)

HSP 1 Score: 187 bits (476), Expect = 6.900e-55
Identity = 89/122 (72.95%), Postives = 101/122 (82.79%), Query Frame = 1 
Query:    1 EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFGKDPT-HGWMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNIRDLFGHKVKFSMLRDTPIVRF 363
            EGVVADYGL L  LIG I +FF RIGIT +RFKPAYNPYTEPS+EVFG  P    W E+GN+G FRPEMLAPMG+P+GV VIAWGLSLERPTMIKY ++NIRDLFGHKV+ +  + TPIVRF
Sbjct:  393 EGVVADYGLGLADLIGTIRDFFRRIGITNLRFKPAYNPYTEPSMEVFGYHPDLKCWTEIGNSGIFRPEMLAPMGLPEGVRVIAWGLSLERPTMIKYRYSNIRDLFGHKVQVAASKSTPIVRF 514
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BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Match: A0A0S7HAQ6_9TELE (SYFA (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HAQ6_9TELE)

HSP 1 Score: 176 bits (447), Expect = 7.820e-55
Identity = 81/121 (66.94%), Postives = 100/121 (82.64%), Query Frame = 1 
Query:    1 EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFG-KDPTHGWMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNIRDLFGHKVKFSMLRDTPIVR 360
            EGVVADYGL+LG L+G++ +FF ++GIT++RFKPAYNPYTEPS+EVF   +    W+EVGN+G FRPEML PMG+P+ V+VIAWGLSLERPTMIKYG  NIR+L GHKV   M+ D+PI R
Sbjct:   15 EGVVADYGLTLGDLMGVLHQFFTKLGITKLRFKPAYNPYTEPSMEVFSYHEGLKKWVEVGNSGVFRPEMLLPMGLPEDVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPICR 135
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BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Match: A0A1A6HE78_NEOLE (AA_TRNA_LIGASE_II domain-containing protein n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6HE78_NEOLE)

HSP 1 Score: 180 bits (457), Expect = 1.760e-54
Identity = 81/121 (66.94%), Postives = 101/121 (83.47%), Query Frame = 1 
Query:    1 EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFG-KDPTHGWMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNIRDLFGHKVKFSMLRDTPIVR 360
            EGV+AD+GL+LGHL+G++ EFF+++GITQ+RFKPAYNPYTEPS+EVF        W+EVGN+G FRPEML PMG+P+ V+VIAWGLSLERPTMIKYG  NIR+L GHKV   M+ D+P+ R
Sbjct:  145 EGVIADHGLTLGHLMGVLREFFSKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPVCR 265
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BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Match: A0A699Y922_HAELA (AA_TRNA_LIGASE_II domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Y922_HAELA)

HSP 1 Score: 174 bits (441), Expect = 4.660e-54
Identity = 79/121 (65.29%), Postives = 97/121 (80.17%), Query Frame = 1 
Query:    1 EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFG-KDPTHGWMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNIRDLFGHKVKFSMLRDTPIVR 360
            EG+V D GL+LGHLIG++ EFF R+G+ ++RFKPAYNPYTEPS+E+F   +    WMEVGN+G FRPEML PMG+P+ V VIAWGLSLERPTMI YG  NIRDLFGH+V  S+++  PI R
Sbjct:    5 EGLVCDRGLTLGHLIGVLHEFFTRLGLPKLRFKPAYNPYTEPSMEIFSYSEGLKKWMEVGNSGMFRPEMLRPMGLPEDVNVIAWGLSLERPTMILYGIDNIRDLFGHRVNLSLIKRNPICR 125
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BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Match: A0A8J7NQY2_ATRSP (Phenylalanine--tRNA ligase (Fragment) n=2 Tax=Neopterygii TaxID=41665 RepID=A0A8J7NQY2_ATRSP)

HSP 1 Score: 179 bits (453), Expect = 7.920e-54
Identity = 81/121 (66.94%), Postives = 101/121 (83.47%), Query Frame = 1 
Query:    1 EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFG-KDPTHGWMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNIRDLFGHKVKFSMLRDTPIVR 360
            EGVVADYGL+LG L+G++ +FF ++GIT++RFKPAYNPYTEPS+EVF   +    W+EVGN+G FRPEML PMG+P+GV+VIAWGLSLERPTMIKYG  NIR+L GHKV   M+ D+P+ R
Sbjct:  160 EGVVADYGLTLGDLMGILHQFFTKLGITKLRFKPAYNPYTEPSMEVFSYHEGLKKWVEVGNSGVFRPEMLLPMGLPEGVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPVCR 280
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78737.18502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482RHV7_9ARCH1.160e-5875.41AA_TRNA_LIGASE_II domain-containing protein (Fragm... [more]
A0A3P3YKH1_PLABS1.600e-5775.41Phenylalanine--tRNA ligase n=2 Tax=Plasmodiophora ... [more]
A0A6A7GAE2_9CRUS6.390e-5673.77Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Hiro... [more]
Q9CT72_MOUSE2.190e-5566.94AA_TRNA_LIGASE_II domain-containing protein (Fragm... [more]
K0TQQ6_THAOC6.180e-5570.49Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Thal... [more]
A0A812RG53_9DINO6.900e-5572.95Phenylalanine--tRNA ligase n=2 Tax=Sar TaxID=26987... [more]
A0A0S7HAQ6_9TELE7.820e-5566.94SYFA (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A1A6HE78_NEOLE1.760e-5466.94AA_TRNA_LIGASE_II domain-containing protein n=1 Ta... [more]
A0A699Y922_HAELA4.660e-5465.29AA_TRNA_LIGASE_II domain-containing protein n=1 Ta... [more]
A0A8J7NQY2_ATRSP7.920e-5466.94Phenylalanine--tRNA ligase (Fragment) n=2 Tax=Neop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78737contigM-pyrifera_M_contig78737:2..367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score186.0
Seed ortholog evalue1e-44
Seed eggNOG ortholog9483.ENSCJAP00000008587
Preferred nameFARSA
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022607,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0065003,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494
EggNOG free text desc.Phenylalanyl-tRNA synthetase alpha subunit
EggNOG OGs35A02@314146,38C6T@33154,3BEB8@33208,3CY2V@33213,3JEC7@40674,48AJF@7711,49262@7742,4MBD9@9443,COG0016@1,KOG2784@2759
EC6.1.1.20
COG Functional cat.J
Best tax levelPrimates
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.484312-CDS-M-pyrifera_M_contig78737:1..3671622816690.484312-CDS-M-pyrifera_M_contig78737:1..367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78737 2..367 +
1692278121.8395865-CDS-M-pyrifera_M_contig78737:1..3671692278121.8395865-CDS-M-pyrifera_M_contig78737:1..367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78737 2..367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78737.18502.1prot_M-pyrifera_M_contig78737.18502.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78737 2..367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78737.18502.1

>prot_M-pyrifera_M_contig78737.18502.1 ID=prot_M-pyrifera_M_contig78737.18502.1|Name=mRNA_M-pyrifera_M_contig78737.18502.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
EGVVADYGLSLGHLIGMIAEFFARIGITQVRFKPAYNPYTEPSVEVFGKD
PTHGWMEVGNAGCFRPEMLAPMGIPKGVTVIAWGLSLERPTMIKYGFTNI
RDLFGHKVKFSMLRDTPIVRF*
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mRNA from alignment at M-pyrifera_M_contig78737:2..367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78737.18502.1 ID=mRNA_M-pyrifera_M_contig78737.18502.1|Name=mRNA_M-pyrifera_M_contig78737.18502.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig78737:2..367+ (Macrocystis pyrifera P11B4 male)
GAAGGTGTCGTTGCTGATTATGGCCTCTCTCTTGGTCACTTGATTGGTAT
GATTGCAGAATTCTTTGCACGCATTGGAATCACCCAAGTTCGTTTCAAAC
CAGCCTACAATCCTTACACCGAACCCTCTGTTGAAGTCTTTGGGAAAGAT
CCAACTCATGGGTGGATGGAAGTGGGAAATGCTGGTTGCTTCCGACCAGA
AATGCTCGCCCCGATGGGTATCCCCAAAGGGGTTACTGTCATTGCTTGGG
GTCTTAGCCTTGAACGTCCTACGATGATTAAGTATGGATTCACTAACATT
AGGGATCTCTTTGGACACAAAGTCAAATTCTCCATGCTTCGAGACACCCC
AATTGTCCGCTTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78737:2..367+

>mRNA_M-pyrifera_M_contig78737.18502.1 ID=mRNA_M-pyrifera_M_contig78737.18502.1|Name=mRNA_M-pyrifera_M_contig78737.18502.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig78737:2..367+ (Macrocystis pyrifera P11B4 male)
GAAGGTGTCGTTGCTGATTATGGCCTCTCTCTTGGTCACTTGATTGGTAT
GATTGCAGAATTCTTTGCACGCATTGGAATCACCCAAGTTCGTTTCAAAC
CAGCCTACAATCCTTACACCGAACCCTCTGTTGAAGTCTTTGGGAAAGAT
CCAACTCATGGGTGGATGGAAGTGGGAAATGCTGGTTGCTTCCGACCAGA
AATGCTCGCCCCGATGGGTATCCCCAAAGGGGTTACTGTCATTGCTTGGG
GTCTTAGCCTTGAACGTCCTACGATGATTAAGTATGGATTCACTAACATT
AGGGATCTCTTTGGACACAAAGTCAAATTCTCCATGCTTCGAGACACCCC
AATTGTCCGCTTCTAGGAAGGTGTCGTTGCTGATTATGGCCTCTCTCTTG
GTCACTTGATTGGTATGATTGCAGAATTCTTTGCACGCATTGGAATCACC
CAAGTTCGTTTCAAACCAGCCTACAATCCTTACACCGAACCCTCTGTTGA
AGTCTTTGGGAAAGATCCAACTCATGGGTGGATGGAAGTGGGAAATGCTG
GTTGCTTCCGACCAGAAATGCTCGCCCCGATGGGTATCCCCAAAGGGGTT
ACTGTCATTGCTTGGGGTCTTAGCCTTGAACGTCCTACGATGATTAAGTA
TGGATTCACTAACATTAGGGATCTCTTTGGACACAAAGTCAAATTCTCCA
TGCTTCGAGACACCCCAATTGTCCGCTTCTAG
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