mRNA_M-pyrifera_M_contig78732.18500.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78732.18500.1
Unique NamemRNA_M-pyrifera_M_contig78732.18500.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Match: A0A7X9KHQ6_9ACTN (Trypsin-like peptidase domain-containing protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KHQ6_9ACTN)

HSP 1 Score: 160 bits (406), Expect = 2.620e-43
Identity = 76/187 (40.64%), Postives = 110/187 (58.82%), Query Frame = 1
Query:   52 VTMTSAIADDDTAVDD-----IKFLPSGAEQICATFDFENMVDGTSWDALWSVDGEFIEEFSIVESEWFGGPDGSDWWVCATGDIGGLPDGTFELQLYIQDEFASSNTARVGGP-GLVTFTVVNDTDAPVCYLQIAPTVANGWGPDDLGAEETIPVGSEMTVELPPDQYDFKGQDCDFNPGTEVYEV 594
            +T+T+ +   D   D+     ++ LP+G  ++C  FD+  M DGT+WDA WSVDGE   +FS++   W GG +G++WWVCA      LPDG +EL LY+ ++   SNT  VG    LV   VVN+T   +CY++++P  A  WGPD+LGA+ TI  G+ + +      YD  G DCD     E+Y V
Sbjct:  322 ITLTAPVFSPDVTPDNQPTELVQLLPTGTTKVCGFFDYSGMTDGTTWDAAWSVDGELNTDFSLLAQSWIGGAEGTNWWVCAGTGEKVLPDGAYELSLYVAEDLLVSNTVFVGSSFALVNLNVVNNTPTKLCYVRLSPQGAQNWGPDELGADVTIEPGASVPLTAVGAVYDVLGADCDNTTVVEMYGV 508          
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Match: A0A7C3BDH4_9CHLR (Trypsin-like peptidase domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3BDH4_9CHLR)

HSP 1 Score: 144 bits (364), Expect = 2.270e-37
Identity = 71/187 (37.97%), Postives = 109/187 (58.29%), Query Frame = 1
Query:   43 FFNVTMTSAIADDDTAVDDIKFLPSGAEQICATFDFENMVDGTSWDALWSVDGEFIEEFSIVESEWFGGPDGSDWWVCATGDIGGLPDGTFELQLYIQDEFASSNTARVGGPGL-VTFTVVNDTDAPVCYLQIAPTVANGWGPDDLGAEETIPVGSEMTVELPPDQYDFKGQDCDFNPGTEVYEVVI 600
            F+N+  +  + D+DT V+ ++ LPSG  ++C  ++FE MVDG SW A+W +D E  +  SI+E  W GG  G+ WW C   D+G L DG +EL L ++ E  ++ +  VGG    + FT+VN +  P+CY  ++P++A  WG D+LGA+E +   +     L   +YD    DCD N   E Y + I
Sbjct:  308 FYNLEFSPGVTDNDTPVNVVRVLPSGIPELCVFWEFEGMVDGMSWSAIWFIDRELSDTGSIIEDSWGGGSAGN-WWACIFNDLG-LDDGLYELVLEVEGERLATESIFVGGNHTPIDFTLVNQSSDPICYAYLSPSLAQNWGQDELGAQEIVFPEAVSVFPLVTGEYDILLLDCDNNTLAEEYNLQI 492          
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Match: A0A1F8PC75_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium RBG_16_48_8 TaxID=1797641 RepID=A0A1F8PC75_9CHLR)

HSP 1 Score: 137 bits (344), Expect = 2.240e-34
Identity = 72/188 (38.30%), Postives = 105/188 (55.85%), Query Frame = 1
Query:   34 EGEFFNVTMTSAIADDDTAVDDIKFLPSGAEQICATFDFENMVDGTSWDALWSVDGEFIEEFSIVESEWFGGPDGSDWWVCATGDIGGLPDGTFELQLYIQDEFASSNTARVGGPG-LVTFTVVNDTDAPVCYLQIAPTVANGWGPDDLGAEETIPVGSEMTVELPPDQYDFKGQDCDFNPGTEVYEV 594
            E EF N+     + +DD       FLPSGA+QICA +D+  M DG  W A W  DG   E  S+++  W GG +G+ WWVC   + G L  GT+EL L +Q E   S++  VGG   +V F ++N++   VC++Q++P+ A GWG D+L ++E I   S+    L    YD    DC+ +   E YE+
Sbjct:  332 ETEFNNLNFADGVTEDDQPTQLWYFLPSGAQQICAFWDYSGMADGLVWSAYWFADGVLDEGSSLLDITWQGGSEGN-WWVCMWNEAG-LAGGTYELVLEVQGETMVSDSIFVGGDRKMVDFLLINNSSLEVCFVQLSPSTAQGWGQDELDSDEVIESNSQRVFSLASGYYDLLLSDCNGDTLYEEYEL 517          
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Match: A0A1F8TGQ9_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium RBG_19FT_COMBO_62_14 TaxID=1797671 RepID=A0A1F8TGQ9_9CHLR)

HSP 1 Score: 128 bits (322), Expect = 2.460e-31
Identity = 65/175 (37.14%), Postives = 97/175 (55.43%), Query Frame = 1
Query:   43 FFNVTMTSAIADDDTAVDDIKFLPSGAEQICATFDFENMVDGTSWDALWSVDGEFIEEFSIVESEWFGGPDGSDWWVCATGDIGGLPDGTFELQLYIQDEFASSNTARVGGPG-LVTFTVVNDTDAPVCYLQIAPTVANGWGPDDLGAEETIPVGSEMTVELPPDQYDFKGQDCD 564
            F N+  +  +  DD   +    LP GA Q+CA +D+E M+DG +W A W  +GE  E  S +   W GG  G+ WWVC   D G L  G +EL L ++ E   +++  VGG   +V FT+ ND+   +C++Q++P+ A  WGPD LG+EE +  G+     +    YD K  +CD
Sbjct:  318 FSNLLFSDEVTADDNPGNLWYALPEGATQLCAFWDYEGMLDGLTWSAYWFANGELDESGSFLNDTWQGGASGN-WWVCVASDSG-LSSGIYELALDVEGEVILTDSIFVGGNRTVVDFTLENDSQLDICFVQLSPSEAQNWGPDKLGSEELMDPGTSRVFPIASGIYDLKLSNCD 490          
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Match: A0A3M2GB03_ACTSX (Serine protease n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GB03_ACTSX)

HSP 1 Score: 119 bits (297), Expect = 9.870e-28
Identity = 59/166 (35.54%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  100 IKFLPSGAEQICATFDFENMVDGTSWDALWSVDGEFIEEFSIVESEWFGGPDGSDWWVCATGDIGGLPDGTFELQLYIQDEFASSNTARVGGPGL-VTFTVVNDTDAPVCYLQIAPTVANGWGPDDLGAEETIPVGSEMTVELPPDQYDFKGQDCDFNPGTEVYEV 594
            +  LPSG +++CA + ++   DG  +DA+W +DG   EE S +   W GG  GS WWVC   D  GL DG +E +  +  +  +++   VGG    VT T+ N +D  VC++Q+AP+ A  WGPD+LG +E +  G+  +  L    +D    DCD     E++ +
Sbjct:  368 VPALPSGVDRVCAFWRYDGFTDGLVYDAVWRIDGVLAEEASFLGDTWHGGTTGS-WWVCII-DETGLVDGLYEFEFTVDGQIIATDAIWVGGDRRPVTLTLANASDQLVCFVQLAPSDAANWGPDELGPDEVVEPGASRSFALVSGFWDMALSDCDGRRLDEIFGI 531          
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Match: UPI001A0752AF (Trypsin-like peptidase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=UPI001A0752AF)

HSP 1 Score: 76.3 bits (186), Expect = 1.130e-12
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   34 EGEFFNVTMTSAIADDDTAVDDIKFLPSGAEQICATFDFENMVDGTSWDALWSVDGEFIEEFSIVESEWFGGPDGSDWWVCATGDIGGLPDGTFELQLYIQDEFASSNTARVGG 375
            E  F N+     +  +D     +  LPSGA  + A +D+E M  G +W+A W  DG+++++ S   S W G   GS WWV  T D  GL +GT+ ++LY ++E  +  +  VGG
Sbjct:  322 EARFHNLVFGPDVTKNDQPTQIVTQLPSGATGLYAFWDYEGMGTGVAWEARWYRDGQYLDDVSWPTSPWQGDVQGS-WWVGITND-NGLIEGTYNVELYAEEELLARGSISVGG 433          
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Match: A0A7Y5BYG0_9CHLR (Peptidoglycan glycosyltransferase (Fragment) n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A7Y5BYG0_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 1.220e-12
Identity = 55/170 (32.35%), Postives = 78/170 (45.88%), Query Frame = 1
Query:   85 TAVDDIKFLPSGAEQICATFDFENMVDGTSWDALWS-----VDGEFIEEFSIVESEWFGGPDGSDWWVCATGDIGGLPDGTFEL--QLYIQDEFASSNTARVGGPGL---VTFTVVNDTDAPVCYLQIAPTVANGWGPDDLGAEETIPVGSEMTVELPPDQYDFKGQDCD 564
            TAV+D++          A + F +  D T W   W      +D E+  EFS+ E ++               D   L D  FE   +LY  +  ++       G  +    T  ++ND+D P+CYLQI+ T A  WGPD LG EE I  G+  + EL PD YD +  DCD
Sbjct: 1126 TAVNDLE--------TTACYIFISSSDSTEWGDDWLGTGFVLDPEYQIEFSLPEGQY---------------DFQAL-DCDFETLSELYGTELTSNGFVWSFSGKEVSSTATLEIINDSDGPICYLQISLTTATEWGPDWLGEEEVISAGTSRSFELTPDTYDIRALDCD 1271          
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Match: A0A1V5P3X6_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium ADurb.Bin360 TaxID=1852861 RepID=A0A1V5P3X6_9CHLR)

HSP 1 Score: 70.9 bits (172), Expect = 4.160e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  298 LPDGTFELQLYIQDEFASSN--------TARVGGPGLVTFTVVNDTDAPVCYLQIAPTVANGWGPDDLGAEETIPV-GSEMTVELPPDQYDFKGQDCDFNPGTEVYEV 594
            +P+GT++++L   DE   +         T  VGG GLV+  V ND+   +CY+ ++PT A+ WG D LG  E+I   G +    L P +YD   QDCD N     ++V
Sbjct:  193 VPEGTYDVKLSDCDEVVLATAWKVSQDYTLTVGGVGLVSLWVKNDSSKEICYVFVSPTTADSWGDDWLGESESIESQGGQRIFFLNPGRYDLLTQDCDGNDLVSEFDV 300          
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Match: A0A1V5WCS6_9CHLR (Non-specific serine/threonine protein kinase n=1 Tax=Chloroflexi bacterium ADurb.Bin222 TaxID=1852858 RepID=A0A1V5WCS6_9CHLR)

HSP 1 Score: 68.9 bits (167), Expect = 3.520e-10
Identity = 54/175 (30.86%), Postives = 78/175 (44.57%), Query Frame = 1
Query:  112 PSGAEQICATFDFENMVDGTSWDALWSVDGEFIEEFSIVESEWFGG-----PDGSDWWVCATGDIGGLPDGTFELQLYIQDEFASSN--------TARVGGPGLVTFTVVNDTDAPVCYLQIAPTVANGWGPDDLGAEETIPV-GSEMTVELPPDQYDFKGQDCDFNPGTEVYEV 594
            PSG   + AT  F+  VD  S   +  V     E  +  E +W GG     PD S  +         +P G +++++   DE   +         T  VGGPGLV+  V N++   +CY+ I+   A+ WG D LG  E+I   G +    L P  YD   QDCD N     ++V
Sbjct:  439 PSGPTAVPATGSFQITVDNYSGYTICYVQISSSEAENWGE-DWLGGDEYLYPDDSRAFE--------VPAGAYDVRVSDCDEMVLATAWGVSDDYTLTVGGPGLVSLRVKNESSVEICYVYISDVTADSWGEDWLGTSESIAAQGGQRIFFLNPGTYDLLVQDCDGNDLVSEFQV 604          
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Match: A0A7V4GF83_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4GF83_9DELT)

HSP 1 Score: 63.5 bits (153), Expect = 1.150e-9
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query:  379 GLVTFTVVNDTDAPVCYLQIAPTVANGWGPDDLGAEETIPVGSEMTVELPPDQYDFKGQDCD 564
            GLV+ TVVN++   V YL ++P  +  WGPD LGAE TI  G   TV +PP  YD   ++ D
Sbjct:   35 GLVSLTVVNNSTEEVAYLHVSPQDSESWGPDVLGAENTIEPGQTFTVRIPPGVYDLMVENFD 96          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78732.18500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7X9KHQ6_9ACTN2.620e-4340.64Trypsin-like peptidase domain-containing protein n... [more]
A0A7C3BDH4_9CHLR2.270e-3737.97Trypsin-like peptidase domain-containing protein n... [more]
A0A1F8PC75_9CHLR2.240e-3438.30Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A1F8TGQ9_9CHLR2.460e-3137.14Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A3M2GB03_ACTSX9.870e-2835.54Serine protease n=1 Tax=Actinomyces sp. TaxID=2931... [more]
UPI001A0752AF1.130e-1235.09Trypsin-like peptidase domain-containing protein n... [more]
A0A7Y5BYG0_9CHLR1.220e-1232.35Peptidoglycan glycosyltransferase (Fragment) n=1 T... [more]
A0A1V5P3X6_9CHLR4.160e-1136.11Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A1V5WCS6_9CHLR3.520e-1030.86Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7V4GF83_9DELT1.150e-946.77Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78732contigM-pyrifera_M_contig78732:363..962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.3995028-CDS-M-pyrifera_M_contig78732:362..9621622816690.3995028-CDS-M-pyrifera_M_contig78732:362..962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78732 363..962 -
1692278121.8144217-CDS-M-pyrifera_M_contig78732:362..9621692278121.8144217-CDS-M-pyrifera_M_contig78732:362..962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78732 363..962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78732.18500.1prot_M-pyrifera_M_contig78732.18500.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78732 363..962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78732.18500.1

>prot_M-pyrifera_M_contig78732.18500.1 ID=prot_M-pyrifera_M_contig78732.18500.1|Name=mRNA_M-pyrifera_M_contig78732.18500.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
EQSAPPAEGSVEGEFFNVTMTSAIADDDTAVDDIKFLPSGAEQICATFDF
ENMVDGTSWDALWSVDGEFIEEFSIVESEWFGGPDGSDWWVCATGDIGGL
PDGTFELQLYIQDEFASSNTARVGGPGLVTFTVVNDTDAPVCYLQIAPTV
ANGWGPDDLGAEETIPVGSEMTVELPPDQYDFKGQDCDFNPGTEVYEVVI
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mRNA from alignment at M-pyrifera_M_contig78732:363..962-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78732.18500.1 ID=mRNA_M-pyrifera_M_contig78732.18500.1|Name=mRNA_M-pyrifera_M_contig78732.18500.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig78732:363..962- (Macrocystis pyrifera P11B4 male)
GAGCAGAGCGCCCCGCCGGCCGAAGGCTCGGTCGAGGGTGAATTCTTCAA CGTGACCATGACCTCGGCCATCGCCGACGACGACACCGCAGTCGACGACA TCAAGTTCCTACCCTCGGGCGCCGAGCAGATCTGCGCCACCTTCGACTTC GAGAACATGGTCGACGGCACGAGCTGGGACGCACTGTGGTCGGTCGACGG CGAGTTCATCGAGGAGTTCTCGATCGTCGAGTCCGAATGGTTCGGCGGCC CCGACGGTTCGGACTGGTGGGTGTGCGCCACCGGCGACATCGGTGGCTTG CCCGACGGCACCTTCGAACTCCAGCTCTACATCCAAGACGAGTTCGCCAG CTCGAACACCGCACGAGTCGGAGGCCCCGGCCTCGTGACCTTCACGGTCG TGAACGACACCGACGCACCGGTCTGCTACCTCCAGATCGCTCCGACGGTG GCCAATGGCTGGGGTCCTGACGATCTCGGGGCCGAAGAGACCATTCCCGT CGGCAGCGAGATGACCGTCGAGCTTCCGCCGGATCAGTACGATTTCAAGG GCCAAGACTGCGATTTCAACCCGGGAACCGAGGTCTACGAGGTCGTCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78732:363..962-

>mRNA_M-pyrifera_M_contig78732.18500.1 ID=mRNA_M-pyrifera_M_contig78732.18500.1|Name=mRNA_M-pyrifera_M_contig78732.18500.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig78732:363..962- (Macrocystis pyrifera P11B4 male)
GAGCAGAGCGCCCCGCCGGCCGAAGGCTCGGTCGAGGGTGAATTCTTCAA
CGTGACCATGACCTCGGCCATCGCCGACGACGACACCGCAGTCGACGACA
TCAAGTTCCTACCCTCGGGCGCCGAGCAGATCTGCGCCACCTTCGACTTC
GAGAACATGGTCGACGGCACGAGCTGGGACGCACTGTGGTCGGTCGACGG
CGAGTTCATCGAGGAGTTCTCGATCGTCGAGTCCGAATGGTTCGGCGGCC
CCGACGGTTCGGACTGGTGGGTGTGCGCCACCGGCGACATCGGTGGCTTG
CCCGACGGCACCTTCGAACTCCAGCTCTACATCCAAGACGAGTTCGCCAG
CTCGAACACCGCACGAGTCGGAGGCCCCGGCCTCGTGACCTTCACGGTCG
TGAACGACACCGACGCACCGGTCTGCTACCTCCAGATCGCTCCGACGGTG
GCCAATGGCTGGGGTCCTGACGATCTCGGGGCCGAAGAGACCATTCCCGT
CGGCAGCGAGATGACCGTCGAGCTTCCGCCGGATCAGTACGATTTCAAGG
GCCAAGACTGCGATTTCAACCCGGGAACCGAGGTCTACGAGGTCGTCATC
GAGCAGAGCGCCCCGCCGGCCGAAGGCTCGGTCGAGGGTGAATTCTTCAA
CGTGACCATGACCTCGGCCATCGCCGACGACGACACCGCAGTCGACGACA
TCAAGTTCCTACCCTCGGGCGCCGAGCAGATCTGCGCCACCTTCGACTTC
GAGAACATGGTCGACGGCACGAGCTGGGACGCACTGTGGTCGGTCGACGG
CGAGTTCATCGAGGAGTTCTCGATCGTCGAGTCCGAATGGTTCGGCGGCC
CCGACGGTTCGGACTGGTGGGTGTGCGCCACCGGCGACATCGGTGGCTTG
CCCGACGGCACCTTCGAACTCCAGCTCTACATCCAAGACGAGTTCGCCAG
CTCGAACACCGCACGAGTCGGAGGCCCCGGCCTCGTGACCTTCACGGTCG
TGAACGACACCGACGCACCGGTCTGCTACCTCCAGATCGCTCCGACGGTG
GCCAATGGCTGGGGTCCTGACGATCTCGGGGCCGAAGAGACCATTCCCGT
CGGCAGCGAGATGACCGTCGAGCTTCCGCCGGATCAGTACGATTTCAAGG
GCCAAGACTGCGATTTCAACCCGGGAACCGAGGTCTACGAGGTCGTCATC
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