mRNA_M-pyrifera_M_contig78709.18498.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78709.18498.1
Unique NamemRNA_M-pyrifera_M_contig78709.18498.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Match: A0A7S4F824_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F824_CHRCT)

HSP 1 Score: 82.8 bits (203), Expect = 8.180e-18
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   31 RNPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFATRLDRVHKLERLVVFRSLPHGFLAF--WMLEPAAVEAVK 258
            R+PL+SP  A+D  L  LPPT I  GGLDPLLDD+VDF TR+ RVH    L +FRSLPH F++F  W   P    A++
Sbjct:   74 RDPLLSPVFASDDVLRRLPPTHIQCGGLDPLLDDSVDFNTRIRRVHVPGELTIFRSLPHTFVSFPHWHAMPEVESAMR 151          
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Match: A0A7S4BWS1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BWS1_CHRCT)

HSP 1 Score: 82.8 bits (203), Expect = 1.830e-16
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   31 RNPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFATRLDRVHKLERLVVFRSLPHGFLAF--WMLEPAAVEAVK 258
            R+PL+SP  A+D  L  LPPT I  GGLDPLLDD+VDF TR+ RVH    L +FRSLPH F++F  W   P    A++
Sbjct:  321 RDPLLSPVFASDDVLRRLPPTHIQCGGLDPLLDDSVDFNTRIRRVHVPGELTIFRSLPHTFVSFPHWHAMPEVESAMR 398          
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Match: A0A813ANT4_9DINO (LIPE protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ANT4_9DINO)

HSP 1 Score: 77.4 bits (189), Expect = 1.790e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 YAPKYA-HKPFRNPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFATRLDRVHKLERLVVFRSLPHGFLAF 222
            Y P++   +P  NP +SP +A+D  L + PPT ++ GGLDPLLDD++DF TRL R+     + V+RSLPHGF +F
Sbjct:  513 YVPQHMLGRPHANPYLSPCLASDAVLSAFPPTFVVNGGLDPLLDDSIDFITRLRRLGVPGSMKVYRSLPHGFFSF 587          
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Match: A0A5A8D2P0_CAFRO (Abhydrolase_3 domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D2P0_CAFRO)

HSP 1 Score: 76.3 bits (186), Expect = 4.690e-14
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   31 RNPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFATRLDRVHKLERLVVFRSLPHGFLAFWMLEPA--AVEAVK 258
            RNP + P +A D  LE  P T +++GGLDPLLDD +DF TRL R+     ++V+R+LPHGF  F  L PA  A+ AV+
Sbjct:  776 RNPEVHPGLADDRVLERFPRTELVLGGLDPLLDDGIDFHTRLRRLSVEGEMLVYRALPHGFFTFNALPPAQGAIRAVE 853          
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Match: A0A7S0DKG8_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DKG8_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 1.250e-13
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   34 NPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFATRLDRVHKLERLVVFRSLPHGFLAFWMLEPAAVEAVKTLERW 273
            NP +SP+  +D  L   PPT I+ GG+D LLDDAVDF  RL R        +FR++PHGF +     P A EA +T  RW
Sbjct:   57 NPQVSPSFTSDAVLAHFPPTSIMTGGMDILLDDAVDFHVRLRRNGVQGNFRIFRTMPHGFWSLGDFLPEAQEAQRTALRW 136          
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Match: A0A7S0J8H8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J8H8_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 1.590e-13
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   34 NPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFATRLDRVHKLERLVVFRSLPHGFLAF--WMLEPAAVEAV 255
            +PL+SP  A D  L  LPPT +  GGLDPLLDD+VDF TR+ RV     L +FRSLPH +++F  W   P    A+
Sbjct:  197 DPLLSPVFAADEVLRRLPPTHLQCGGLDPLLDDSVDFNTRIRRVGVPGELTIFRSLPHTYVSFPHWHAMPEVEAAM 272          
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Match: A0A067CYN0_SAPPC (Abhydrolase_3 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYN0_SAPPC)

HSP 1 Score: 72.8 bits (177), Expect = 7.620e-13
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    1 YAPKYAHKP-----FRNPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFATRLDRVHKLERLVVFRSLPHGFLAFWMLEPAAVEAVKTL 264
            Y P + H         +P++SP +A DT L   P T ++VG LDPLLDD++DF TRL  +H    L V   L HGFL +  L PAA  A+  +
Sbjct:  598 YNPAHGHDAEYKDNIHDPMVSPGLANDTILSQFPHTTLMVGDLDPLLDDSIDFHTRLSSLHVPGALKVLPDLTHGFLIYGDLVPAAQRAINDM 690          
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Match: V9FSV9_PHYPR (Abhydrolase_3 domain-containing protein n=28 Tax=Peronosporaceae TaxID=4777 RepID=V9FSV9_PHYPR)

HSP 1 Score: 72.8 bits (177), Expect = 7.630e-13
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 YAPKYAHKP-----FRNPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFATRLDRVHKLERLVVFRSLPHGFLAFWMLEPAAVEAV-KTLER 270
            Y P + H         +P +SP +A D+ LE  PPT ++VG LDPLLDD+VDF TRL  +     L ++  L HGFL +  L P A +A+ +T ER
Sbjct:  614 YYPSHGHSNQYKLNIHDPCVSPGLAEDSLLEKFPPTSLVVGDLDPLLDDSVDFYTRLSFLKVPSTLKIYSGLSHGFLIYGDLVPEAQKAIDETCER 709          
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Match: R1DA13_EMIHU (Abhydrolase_3 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DA13_EMIHU)

HSP 1 Score: 70.1 bits (170), Expect = 8.380e-13
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   19 HKPFRNPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFATRLDRVHKLERLVVFRSLPH 207
            H   R+P+ SP  A D  L  LPPT IL GGLDPLLDD+VDF TR+ R+     L ++RSLPH
Sbjct:  119 HWMVRDPIFSPVFAPDEALRQLPPTTILCGGLDPLLDDSVDFNTRIRRMGVPGELHIYRSLPH 181          
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Match: A0A3F2RSI3_9STRA (Abhydrolase_3 domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSI3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.610e-13
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 YAPKYAHKP-----FRNPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFATRLDRVHKLERLVVFRSLPHGFLAFWMLEPAAVEAV-KTLER 270
            Y P + H         +P +SP +A D  LE  PPT ++VG LDPLLDD+VDF TRL  +     L ++  L HGFL +  L P A +A+ +T ER
Sbjct:  332 YYPSHGHSNQYKFNIHDPCVSPGLAEDALLEKFPPTSLVVGDLDPLLDDSVDFYTRLSFLKVPSTLKIYSGLSHGFLIYGDLVPEAQKAIDETCER 427          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78709.18498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4F824_CHRCT8.180e-1853.85Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4BWS1_CHRCT1.830e-1653.85Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A813ANT4_9DINO1.790e-1449.33LIPE protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A5A8D2P0_CAFRO4.690e-1450.00Abhydrolase_3 domain-containing protein n=5 Tax=Ca... [more]
A0A7S0DKG8_9EUKA1.250e-1346.25Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S0J8H8_9EUKA1.590e-1350.00Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A067CYN0_SAPPC7.620e-1341.94Abhydrolase_3 domain-containing protein n=2 Tax=Sa... [more]
V9FSV9_PHYPR7.630e-1342.71Abhydrolase_3 domain-containing protein n=28 Tax=P... [more]
R1DA13_EMIHU8.380e-1355.56Abhydrolase_3 domain-containing protein (Fragment)... [more]
A0A3F2RSI3_9STRA9.610e-1342.71Abhydrolase_3 domain-containing protein n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78709contigM-pyrifera_M_contig78709:609..908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue4.6e-11
Seed eggNOG ortholog164328.Phyra76241
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Steryl acetyl hydrolase
EggNOG OGs3QD8N@4776,COG0657@1,KOG4388@2759
COG Functional cat.I
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.233863-CDS-M-pyrifera_M_contig78709:608..9081622816690.233863-CDS-M-pyrifera_M_contig78709:608..908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78709 609..908 -
1692278121.7394557-CDS-M-pyrifera_M_contig78709:608..9081692278121.7394557-CDS-M-pyrifera_M_contig78709:608..908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78709 609..908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78709.18498.1prot_M-pyrifera_M_contig78709.18498.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78709 609..908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78709.18498.1

>prot_M-pyrifera_M_contig78709.18498.1 ID=prot_M-pyrifera_M_contig78709.18498.1|Name=mRNA_M-pyrifera_M_contig78709.18498.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
YAPKYAHKPFRNPLMSPAVATDTELESLPPTRILVGGLDPLLDDAVDFAT
RLDRVHKLERLVVFRSLPHGFLAFWMLEPAAVEAVKTLERWCTSPPDST*
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mRNA from alignment at M-pyrifera_M_contig78709:609..908-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78709.18498.1 ID=mRNA_M-pyrifera_M_contig78709.18498.1|Name=mRNA_M-pyrifera_M_contig78709.18498.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig78709:609..908- (Macrocystis pyrifera P11B4 male)
TACGCACCAAAATATGCGCACAAGCCATTTCGAAATCCTCTCATGTCACC AGCAGTAGCAACAGACACTGAACTTGAATCCCTCCCTCCCACCAGAATTC TTGTTGGAGGTCTTGACCCTCTCCTTGATGATGCAGTCGACTTTGCAACA CGACTTGATCGTGTCCATAAGCTGGAGCGCCTTGTAGTCTTTCGCTCTCT CCCGCATGGGTTCCTCGCCTTTTGGATGCTTGAACCTGCAGCAGTAGAAG CAGTGAAAACTCTCGAGAGATGGTGTACATCTCCGCCCGATTCCACCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78709:609..908-

>mRNA_M-pyrifera_M_contig78709.18498.1 ID=mRNA_M-pyrifera_M_contig78709.18498.1|Name=mRNA_M-pyrifera_M_contig78709.18498.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig78709:609..908- (Macrocystis pyrifera P11B4 male)
TACGCACCAAAATATGCGCACAAGCCATTTCGAAATCCTCTCATGTCACC
AGCAGTAGCAACAGACACTGAACTTGAATCCCTCCCTCCCACCAGAATTC
TTGTTGGAGGTCTTGACCCTCTCCTTGATGATGCAGTCGACTTTGCAACA
CGACTTGATCGTGTCCATAAGCTGGAGCGCCTTGTAGTCTTTCGCTCTCT
CCCGCATGGGTTCCTCGCCTTTTGGATGCTTGAACCTGCAGCAGTAGAAG
CAGTGAAAACTCTCGAGAGATGGTGTACATCTCCGCCCGATTCCACCTGA
TACGCACCAAAATATGCGCACAAGCCATTTCGAAATCCTCTCATGTCACC
AGCAGTAGCAACAGACACTGAACTTGAATCCCTCCCTCCCACCAGAATTC
TTGTTGGAGGTCTTGACCCTCTCCTTGATGATGCAGTCGACTTTGCAACA
CGACTTGATCGTGTCCATAAGCTGGAGCGCCTTGTAGTCTTTCGCTCTCT
CCCGCATGGGTTCCTCGCCTTTTGGATGCTTGAACCTGCAGCAGTAGAAG
CAGTGAAAACTCTCGAGAGATGGTGTACATCTCCGCCCGATTCCACCTGA
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