mRNA_M-pyrifera_M_contig78657.18487.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78657.18487.1
Unique NamemRNA_M-pyrifera_M_contig78657.18487.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Match: UPI00145523E6 (protein RCC2 homolog n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145523E6)

HSP 1 Score: 67.0 bits (162), Expect = 1.000e-10
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   49 HVAVVTENGECFVWGDGEKGQLGIAASMKRSLRPFRIPATKDKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQ 273
            H  ++TE G+   WG G+KGQLG  A++ R   P  I A KD + +V  A G SH++ LT++GAV AFG NK+GQ
Sbjct:  110 HSIIITEAGKAMSWGRGDKGQLGHGAAV-RCEAPKIIEALKD-FNIVNAACGRSHSMCLTDEGAVYAFGDNKLGQ 182          
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Match: UPI0018D5C136 (protein RCC2 homolog n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5C136)

HSP 1 Score: 66.2 bits (160), Expect = 1.880e-10
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   49 HVAVVTENGECFVWGDGEKGQLGIAASMKRSLRPFRIPATKDKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQ 273
            H  ++TE G+   WG G+KGQLG    + R   P  I   K+ + +V  A G SHT+ LTE+GAV AFG NK+GQ
Sbjct:  111 HSVIITEAGKAMSWGRGDKGQLGHG-DLNRCEAPKLIEGLKE-FTIVNAACGRSHTMCLTEEGAVYAFGDNKLGQ 183          
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Match: UPI001425B338 (protein RCC2-like isoform X1 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425B338)

HSP 1 Score: 63.5 bits (153), Expect = 1.610e-9
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query:   49 HVAVVTENGECFVWGDGEKGQLGIAASMKRSLRPFRIPATKDKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQCAQPF 288
            H  +VTE G+   WG  +K QLG   +++R   P  I   KD Y LV  A G +HTL LT +G V AFG NK GQ    F
Sbjct:  121 HTLLVTEEGKAMSWGRNDKEQLGHCDAIRRDT-PTLIETLKD-YTLVEAACGRNHTLCLTNEGEVFAFGENKFGQLGLGF 198          
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Match: A0A8B7Y0D8_ACAPL (protein RCC2 homolog n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y0D8_ACAPL)

HSP 1 Score: 63.2 bits (152), Expect = 2.270e-9
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   49 HVAVVTENGECFVWGDGEKGQLGIAASMKRSLRPFRIPATKDKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQ 273
            H  ++TE G+   WG G+KGQLG    + R   P  I   K+ + +V  A G +HT+ LTE+G V AFG NK+GQ
Sbjct:  110 HSIIITEAGKAMSWGRGDKGQLGHG-DLNRCEAPKLIEGLKE-FTIVNAACGRNHTMCLTEEGVVYAFGDNKLGQ 182          
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Match: A0A7S0SJ66_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJ66_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 3.160e-9
Identity = 38/109 (34.86%), Postives = 51/109 (46.79%), Query Frame = 1
Query:   46 GHVAVVTENGECFVWGDGEKGQLGIAASMKR-------------------SLRPFRIPATK-DKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQCAQPFDVNVCHEP 312
            GH A VT  GE F WG    GQLG   S++R                   + RP+R+      ++ LV VA GA+HT+ LT +G + A+GSN  GQ  +       H P
Sbjct:    1 GHAAAVTATGELFTWGGNSDGQLG--RSLRRGQVRGPVRFAAATGVAAADTTRPYRVVGGGLSRHDLVGVAVGAAHTVALTSEGQLWAWGSNAQGQLGRLECAERSHHP 107          
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Match: A0A0K8TBL4_LYGHE (RCC1 and BTB domain-containing protein 1 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8TBL4_LYGHE)

HSP 1 Score: 62.4 bits (150), Expect = 4.130e-9
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   40 GRGHVAVVTENGECFVWGDGEKGQLGIAASMKRSLRPFRIPATKDKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQCAQPFDVNV 300
            G+     VT NGE + WG    GQLG+  ++ + L P R+ A  +   +V V  G SHTL L+++G V A+G+N  GQ A P   NV
Sbjct:  188 GQTSTIAVTNNGEVYGWGYNGNGQLGVGNTVNQ-LNPCRVMALSNTV-IVKVVCGNSHTLALSDEGKVYAWGANTYGQLAMPTKSNV 272          
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Match: A0A6B2KZ94_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KZ94_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 4.200e-9
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   49 HVAVVTENGECFVWGDGEKGQLGIAASMKRSLRPFRIPATKDKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQC 276
            H AV+T   E +V+G G+KGQLG+      ++RP  +P   DK  +  VA G SHT+  T  G + AFG N+ GQC
Sbjct:   21 HSAVLTSKNELYVFGRGDKGQLGLGVD--NAMRPSVVPFFADKK-VAKVACGNSHTIVCTMNGEIYAFGDNEKGQC 93          
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Match: A0A7S3YLJ7_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YLJ7_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 4.310e-9
Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 1
Query:   28 EVDVGRGHVAVVTENGECFVWGDGEKGQLGIAASMKRSLRPFRIPATKDKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQCAQPFDVNVCHEP 312
            +V  G      VT +G+C+ WG G++G+LG+  S  +   P  + + +    +VAV+ G+ H LGLT  G V A+GS + GQ     + N C++P
Sbjct:  409 DVAAGDTFCCAVTRHGQCYAWGTGKEGELGLGQSALKKNYPCLVVSLRSTS-VVAVSCGSHHVLGLTGNGQVFAWGSGEYGQLGHGGNSN-CYKP 501          
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Match: S4R6Y3_PETMA (Regulator of chromosome condensation 2 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4R6Y3_PETMA)

HSP 1 Score: 62.0 bits (149), Expect = 5.470e-9
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   49 HVAVVTENGECFVWGDGEKGQLGIAASMKRSLRPFRIPATKDKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQ 273
            H  ++T+ G+ + WG G+KGQLG    +KR   P  + A   K  +VA A G SHTL +TE G V+AFG N +GQ
Sbjct:   65 HCLLLTDLGQVYTWGRGDKGQLGHG-DLKRVEAPRPVDALF-KLTVVAAACGRSHTLCITETGVVMAFGENHLGQ 137          
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Match: A0A7K7GSB7_ERIRU (RCC2 protein (Fragment) n=1 Tax=Erithacus rubecula TaxID=37610 RepID=A0A7K7GSB7_ERIRU)

HSP 1 Score: 61.6 bits (148), Expect = 7.070e-9
Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 1
Query:   49 HVAVVTENGECFVWGDGEKGQLGIAASMKRSLRPFRIPATKDKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQCAQPFDVNVCHEPT 315
            H  ++T  G  + WG  EKGQLG   + KR   P  I A   +  +VA A G +HTL LTE G+V AFG NK+GQ       +    PT
Sbjct:   39 HSLLITAEGRLWSWGRNEKGQLGHGDT-KRVEAPRPIEALAGEA-IVAAACGRNHTLALTENGSVFAFGENKLGQLGLGNQTDAVPSPT 125          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78657.18487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00145523E61.000e-1048.00protein RCC2 homolog n=1 Tax=Asterias rubens TaxID... [more]
UPI0018D5C1361.880e-1046.67protein RCC2 homolog n=1 Tax=Patiria miniata TaxID... [more]
UPI001425B3381.610e-945.00protein RCC2-like isoform X1 n=1 Tax=Anneissia jap... [more]
A0A8B7Y0D8_ACAPL2.270e-944.00protein RCC2 homolog n=1 Tax=Acanthaster planci Ta... [more]
A0A7S0SJ66_9CHLO3.160e-934.86Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A0K8TBL4_LYGHE4.130e-940.23RCC1 and BTB domain-containing protein 1 n=2 Tax=L... [more]
A0A6B2KZ94_9EUKA4.200e-943.42Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S3YLJ7_9EUKA4.310e-934.74Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
S4R6Y3_PETMA5.470e-945.33Regulator of chromosome condensation 2 n=2 Tax=Pet... [more]
A0A7K7GSB7_ERIRU7.070e-941.57RCC2 protein (Fragment) n=1 Tax=Erithacus rubecula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78657contigM-pyrifera_M_contig78657:503..820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog529818.AMSG_02031T0
KEGG koko:K10614,ko:K10615
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size318
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816689.487395-CDS-M-pyrifera_M_contig78657:502..8201622816689.487395-CDS-M-pyrifera_M_contig78657:502..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78657 503..820 +
1692278121.2816992-CDS-M-pyrifera_M_contig78657:502..8201692278121.2816992-CDS-M-pyrifera_M_contig78657:502..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78657 503..820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78657.18487.1prot_M-pyrifera_M_contig78657.18487.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78657 503..820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78657.18487.1

>prot_M-pyrifera_M_contig78657.18487.1 ID=prot_M-pyrifera_M_contig78657.18487.1|Name=mRNA_M-pyrifera_M_contig78657.18487.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MFKPPRAPAEVDVGRGHVAVVTENGECFVWGDGEKGQLGIAASMKRSLRP
FRIPATKDKYPLVAVATGASHTLGLTEQGAVVAFGSNKMGQCAQPFDVNV
CHEPT*
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mRNA from alignment at M-pyrifera_M_contig78657:503..820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78657.18487.1 ID=mRNA_M-pyrifera_M_contig78657.18487.1|Name=mRNA_M-pyrifera_M_contig78657.18487.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig78657:503..820+ (Macrocystis pyrifera P11B4 male)
ATGTTCAAACCACCTCGAGCTCCAGCAGAAGTGGATGTGGGCAGAGGACA TGTGGCGGTGGTGACGGAGAATGGAGAGTGTTTCGTGTGGGGTGACGGGG AGAAAGGGCAACTTGGGATTGCAGCAAGCATGAAACGATCGCTACGCCCA TTCCGAATCCCAGCCACCAAGGACAAGTACCCTCTTGTCGCCGTAGCAAC TGGTGCAAGCCACACCCTAGGCCTCACCGAACAAGGCGCCGTTGTCGCCT TTGGATCCAACAAAATGGGACAGTGCGCACAACCATTCGACGTCAACGTC TGCCACGAACCAACGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78657:503..820+

>mRNA_M-pyrifera_M_contig78657.18487.1 ID=mRNA_M-pyrifera_M_contig78657.18487.1|Name=mRNA_M-pyrifera_M_contig78657.18487.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig78657:503..820+ (Macrocystis pyrifera P11B4 male)
ATGTTCAAACCACCTCGAGCTCCAGCAGAAGTGGATGTGGGCAGAGGACA
TGTGGCGGTGGTGACGGAGAATGGAGAGTGTTTCGTGTGGGGTGACGGGG
AGAAAGGGCAACTTGGGATTGCAGCAAGCATGAAACGATCGCTACGCCCA
TTCCGAATCCCAGCCACCAAGGACAAGTACCCTCTTGTCGCCGTAGCAAC
TGGTGCAAGCCACACCCTAGGCCTCACCGAACAAGGCGCCGTTGTCGCCT
TTGGATCCAACAAAATGGGACAGTGCGCACAACCATTCGACGTCAACGTC
TGCCACGAACCAACGTAAATGTTCAAACCACCTCGAGCTCCAGCAGAAGT
GGATGTGGGCAGAGGACATGTGGCGGTGGTGACGGAGAATGGAGAGTGTT
TCGTGTGGGGTGACGGGGAGAAAGGGCAACTTGGGATTGCAGCAAGCATG
AAACGATCGCTACGCCCATTCCGAATCCCAGCCACCAAGGACAAGTACCC
TCTTGTCGCCGTAGCAACTGGTGCAAGCCACACCCTAGGCCTCACCGAAC
AAGGCGCCGTTGTCGCCTTTGGATCCAACAAAATGGGACAGTGCGCACAA
CCATTCGACGTCAACGTCTGCCACGAACCAACGTAA
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