prot_M-pyrifera_M_contig78595.18466.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig78595.18466.1
Unique Nameprot_M-pyrifera_M_contig78595.18466.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length107
Homology
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BLAST of mRNA_M-pyrifera_M_contig78595.18466.1 vs. uniprot
Match: A0A2E9XVB1_9RICK (30S ribosomal protein S13 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E9XVB1_9RICK)

HSP 1 Score: 174 bits (441), Expect = 2.040e-54
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = 0 
Query:    1 MSKLVILDTTISLEKEFKSALNSIFGFSYIKLRHLNKLFGTNVRSLYKIKDLTLNERNLISYYLPDLSIFGSDLKKKISDEQDKYFSLKCYRRNRILLGLPAHGQRT 107
            MS LVILDTTI LEKEFK AL SIFGFSYIKLRHLNK+FG+NV S+YK++DLT ++RN +S+YLP+L++FGSDLKKKIS EQ+K+F+LKCYRRNR+LLGLPAHGQRT
Sbjct:    1 MSNLVILDTTILLEKEFKLALKSIFGFSYIKLRHLNKIFGSNVNSIYKVQDLTASDRNSMSFYLPELALFGSDLKKKISVEQEKFFTLKCYRRNRLLLGLPAHGQRT 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78595.18466.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E9XVB1_9RICK2.040e-5477.5730S ribosomal protein S13 n=1 Tax=Rickettsiales ba... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 2..107
e-value: 9.7E-9
score: 33.2
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 6..107
score: 13.288
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.10coord: 66..107
e-value: 2.7E-5
score: 25.9
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 5..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78595contigM-pyrifera_M_contig78595:665..985 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78595.18466.1mRNA_M-pyrifera_M_contig78595.18466.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig78595 665..985 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig78595.18466.1 ID=prot_M-pyrifera_M_contig78595.18466.1|Name=mRNA_M-pyrifera_M_contig78595.18466.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MSKLVILDTTISLEKEFKSALNSIFGFSYIKLRHLNKLFGTNVRSLYKIK
DLTLNERNLISYYLPDLSIFGSDLKKKISDEQDKYFSLKCYRRNRILLGL
PAHGQRT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001892Ribosomal_S13
IPR02743730s_Rbsml_prot_S13_C
IPR010979Ribosomal_S13-like_H2TH