mRNA_M-pyrifera_M_contig782.18388.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig782.18388.1
Unique NamemRNA_M-pyrifera_M_contig782.18388.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig782.18388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig782contigM-pyrifera_M_contig782:17885..20694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size567
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig782.18388.1prot_M-pyrifera_M_contig782.18388.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig782 17885..20694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.650546-CDS-M-pyrifera_M_contig782:17884..180081622816683.650546-CDS-M-pyrifera_M_contig782:17884..18008Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 17885..18008 -
1692278117.6712656-CDS-M-pyrifera_M_contig782:17884..180081692278117.6712656-CDS-M-pyrifera_M_contig782:17884..18008Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 17885..18008 -
1622816683.6693184-CDS-M-pyrifera_M_contig782:18810..189831622816683.6693184-CDS-M-pyrifera_M_contig782:18810..18983Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 18811..18983 -
1692278117.6815457-CDS-M-pyrifera_M_contig782:18810..189831692278117.6815457-CDS-M-pyrifera_M_contig782:18810..18983Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 18811..18983 -
1622816683.6809871-CDS-M-pyrifera_M_contig782:19810..199451622816683.6809871-CDS-M-pyrifera_M_contig782:19810..19945Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 19811..19945 -
1692278117.6913471-CDS-M-pyrifera_M_contig782:19810..199451692278117.6913471-CDS-M-pyrifera_M_contig782:19810..19945Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 19811..19945 -
1622816683.6929963-CDS-M-pyrifera_M_contig782:20559..206941622816683.6929963-CDS-M-pyrifera_M_contig782:20559..20694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 20560..20694 -
1692278117.7106526-CDS-M-pyrifera_M_contig782:20559..206941692278117.7106526-CDS-M-pyrifera_M_contig782:20559..20694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 20560..20694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig782.18388.1

>prot_M-pyrifera_M_contig782.18388.1 ID=prot_M-pyrifera_M_contig782.18388.1|Name=mRNA_M-pyrifera_M_contig782.18388.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp
MKEEDGDEDSEPRTLIVRAQDGETIMGEDLVLTVTGDETVVQIQEVIKAM
KGVPLTRMMVFKGEDATRISDKHMAWSLSRNGLYAGDVLLVKPTRPNQWL
WHPLEWYEERLLKAVEDLASSSPWAQRGRGCPLSVLEDHVMVPPPLGRDS
LKGILRRFPDRLRLELDLVSEKFVVYPNQEAMLLPSSY*
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mRNA from alignment at M-pyrifera_M_contig782:17885..20694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig782.18388.1 ID=mRNA_M-pyrifera_M_contig782.18388.1|Name=mRNA_M-pyrifera_M_contig782.18388.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2810bp|location=Sequence derived from alignment at M-pyrifera_M_contig782:17885..20694- (Macrocystis pyrifera P11B4 male)
ATGAAAGAAGAAGATGGCGATGAAGACTCCGAGCCTCGAACGTTGATAGT
TCGAGCGCAAGATGGAGAAACGATCATGGGGGAAGATCTTGTACTGACCG
TTACTGGGGACGAGACTGTCGTACAGATCCAGGAGGTTAGATTTTAGATT
CACATCCACGAGTGGGTGCAGGGTATGGTCAGCATTAACCATAGGATACA
GGATACGCACATGCATGTGTGTGTTTCAGGAAATAAATGCAGTGGTTGGC
CAAATGCGCGGCGATCTAGAAGATATGTCTCAACCCGGCACCGCAGCTCA
CTTCGCCCCGAGGCCTCGCTGTGAAAGGATTCGAAGTATCGATGGTGCGG
CGTGCGACACCTCTTGGGTGTGATTTGCGTGACGTCTGCCTGCTGTACTC
GTACTACCCGTGCTCTGCTGTACAGCACTTCTTGCTGCTTGTTGTTGGCT
GTCGTACCAAGTGAATGCCCAAAAGTTGTATGCGTACAGCAGTCAGTGAC
ATGATTTCCGAACAAACCTTATCTACTGCCATGATTGATACCGAGACGAT
TCTTGACTCGAGGCTCATCCTTGCGTCGTTCCCGCTTCATGAGCTCGGGG
CGGTAATTTCGTCAAAGTTTGGCACACTGGCCTGTATCATATGAAAGTAC
GACGGGTATGATCCCTCCCTGTTTTATCTCTAATTATGACCTGTTTGCAC
GGCTAATCGTCGCATACCGTACAATACCCACCCGTGCACCCGAATGAAGG
TGATCAAGGCAATGAAAGGAGTCCCCCTCACCCGCATGATGGTATTCAAG
GGAGAAGACGCTACACGTATCTCCGACAAGCACATGGCATGGAGCCTGAG
TCGCAACGGCCTGTACGCTGGGGACGTCCTCTTGGTGAGATGCTTTGTGT
CTGTCCGTAGCAGACGTTTTTGTCGTTGGTTAATCGTTTCATAGTTATAC
CCTGCTGGCACTACAGTACTGTACACACCGACTTAAATATTTAACTGCTT
ACTCTGTATTCATGGGAGGAAAATGGTGTGCGCGCGGCCGGCAAATCGCC
TGGCCAGCAATTAATATTATTATTAATAGCAAAGCTGACTATCGAATAAT
CAATGGGCTGAGATCCACAGCGCTGACGTACGACATCAGTACTTATTAAT
AGTATCTGAACATATAAAACGACGTGTACTGCAGTAGTGTGATAATAGTA
TTGAGGTAGTAATTGCAGTACGTAGTTGTTGTTGTCGTTAATGTTGTCTC
ACAGCAACTCGGATATCAGTAGAAAAAAAGGCATGAAAAACTCGCGGTGA
AGCCGTAGTAGTAGTAGACCAGAAATCTGGCACCCTGTAGAGCGACCCCA
ACCAGTAAACCCTTCATAGCGTAAATTGCGCCACAACGTAGGATTATATG
CACCTGGGGCATCGTAGTGAAAATATCGGGTCTCACTACCAGGTACCTGC
TACCACTGTATTTGCCCGCCAGCCTTGAAGCTTGAAGGCATACTTCGGAA
AAGCTGATAGAGAATACCCAATCATATCTACCAGGTATACTCGTACCAAT
ACATATGACAGGGGTAGACACTCTGACGGTTCATGTCCGGAGCACTCACT
GATACGAAGTTCACATCAACCAGCAAGTACGCAAGAGTCACTGCCGCCTA
AAAATGGGCGACGCACATCTTCGATTATAGCAACGGCACGGCGATGGATC
TTGCGCCGCAGGTCAAACCGACTCGACCGAATCAATGGTTGTGGCATCCC
TTGGAGTGGTACGAGGAGCGTCTGCTGAAAGCGGTGGAAGATCTGGCTTC
TTCCAGCCCGTGGGCGCAGCGCGGGAGGGGGTGTCCCCTATCAGTGTTGG
AGGACCATGTCATGGTACCACCACCACTTGGCCGGTAGGGAATATTTGAG
TTTGTTGTATTATTAATCCTTGTGGAACCCAGGGGACAAATGACCCTAAC
AAGGAAATGTTTGGTTTTATAAAATACTTAAAACCGGCCCTGAAAAATAG
GAACATCAGGAAAATTTCAGTATGTAGGAACAAACTTTCTTCGACAGTAG
CGGCTCTTATAAAAAACTGTACCTACTACCAGGTATGAAAAGTGTTGAGC
GTGCGCCAGCATAAAAAAAGAGGTGCCATGCTGCGCCTGGATTGTATTTC
GTACGACTACTTACACTTTGCTATGCAGCTACTAAAGTTGTCACCAGGCA
AGCAAGCAGTCCTATGGTGTGGTCATCGTCACGGATCCCCTCTGAAGCCC
GAAAAGGGGTTGGCAGTACGTACCAGGTACAGCATAAGCCTACAAAAAAT
AAATATCCTAGGATAAGAACATAGTGCTCACTTTTTGGGGGACGCTAAGA
AAATTGGATTAAAAAATCGTTTTCAGCGGCGATCGCTACACTGAATCCTA
TTTGATAGCATATGCTCAAGGTTGTTGAAGAATGCTGTCACAATAAGGTT
TTAAGGCTACTAAATATCTCTCGTAAGTAGTGAGTCGCGAAGAGCCCCGA
CTAACTATTTATCGAGCGCGCACAAATCGCAAGCGAGATGTTTTTTTGAC
CCGATGTGTTTAGTCTGAATTGATTTATCACCACACACGAAGCAAATGAT
CTGTGCTTCCAACGGCGACACCCGTCCCCCCTTCCCTTCCCGCGCGTTTG
CCGTGGGGTGGCGCCTCTTTTTCTGCCTTGCTACAGGGACTCTCTCAAGG
GAATCTTGCGGAGATTCCCAGACCGGCTTCGACTTGAGCTCGACCTCGTG
TCCGAGAAATTCGTGGTCTACCCAAATCAGGAGGCGATGCTTCTGCCCTC
ATCCTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig782:17885..20694-

>mRNA_M-pyrifera_M_contig782.18388.1 ID=mRNA_M-pyrifera_M_contig782.18388.1|Name=mRNA_M-pyrifera_M_contig782.18388.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig782:17885..20694- (Macrocystis pyrifera P11B4 male)
ATGAAAGAAGAAGATGGCGATGAAGACTCCGAGCCTCGAACGTTGATAGT
TCGAGCGCAAGATGGAGAAACGATCATGGGGGAAGATCTTGTACTGACCG
TTACTGGGGACGAGACTGTCGTACAGATCCAGGAGATGAAAGAAGAAGAT
GGCGATGAAGACTCCGAGCCTCGAACGTTGATAGTTCGAGCGCAAGATGG
AGAAACGATCATGGGGGAAGATCTTGTACTGACCGTTACTGGGGACGAGA
CTGTCGTACAGATCCAGGAGGTGATCAAGGCAATGAAAGGAGTCCCCCTC
ACCCGCATGATGGTATTCAAGGGAGAAGACGCTACACGTATCTCCGACAA
GCACATGGCATGGAGCCTGAGTCGCAACGGCCTGTACGCTGGGGACGTCC
TCTTGGTGATCAAGGCAATGAAAGGAGTCCCCCTCACCCGCATGATGGTA
TTCAAGGGAGAAGACGCTACACGTATCTCCGACAAGCACATGGCATGGAG
CCTGAGTCGCAACGGCCTGTACGCTGGGGACGTCCTCTTGGTCAAACCGA
CTCGACCGAATCAATGGTTGTGGCATCCCTTGGAGTGGTACGAGGAGCGT
CTGCTGAAAGCGGTGGAAGATCTGGCTTCTTCCAGCCCGTGGGCGCAGCG
CGGGAGGGGGTGTCCCCTATCAGTGTTGGAGGACCATGTCATGGTACCAC
CACCACTTGGCCGGTCAAACCGACTCGACCGAATCAATGGTTGTGGCATC
CCTTGGAGTGGTACGAGGAGCGTCTGCTGAAAGCGGTGGAAGATCTGGCT
TCTTCCAGCCCGTGGGCGCAGCGCGGGAGGGGGTGTCCCCTATCAGTGTT
GGAGGACCATGTCATGGTACCACCACCACTTGGCCGGGACTCTCTCAAGG
GAATCTTGCGGAGATTCCCAGACCGGCTTCGACTTGAGCTCGACCTCGTG
TCCGAGAAATTCGTGGTCTACCCAAATCAGGAGGCGATGCTTCTGCCCTC
ATCCTACTGAGGACTCTCTCAAGGGAATCTTGCGGAGATTCCCAGACCGG
CTTCGACTTGAGCTCGACCTCGTGTCCGAGAAATTCGTGGTCTACCCAAA
TCAGGAGGCGATGCTTCTGCCCTCATCCTACTGA
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