mRNA_M-pyrifera_M_contig77785.18294.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77785.18294.1
Unique NamemRNA_M-pyrifera_M_contig77785.18294.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77785.18294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77785contigM-pyrifera_M_contig77785:85..741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size657
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.8441205-CDS-M-pyrifera_M_contig77785:84..7411622816678.8441205-CDS-M-pyrifera_M_contig77785:84..741Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77785 85..741 -
1692278114.8564193-CDS-M-pyrifera_M_contig77785:84..7411692278114.8564193-CDS-M-pyrifera_M_contig77785:84..741Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77785 85..741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77785.18294.1prot_M-pyrifera_M_contig77785.18294.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77785 85..741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77785.18294.1

>prot_M-pyrifera_M_contig77785.18294.1 ID=prot_M-pyrifera_M_contig77785.18294.1|Name=mRNA_M-pyrifera_M_contig77785.18294.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=219bp
LGVVYSVCSVVAVLLLVRAHVRSPPWTAPKLILGCCAGALAGRAAFLFSA
DRWDGLSWAVHPAALDPGDAIVHGLGEVPGLLLLGACVLVLVRWVDAFGG
YTAQGAARVRRMYRPVVLFGGIAIAIAQIAIWSAYAVSSALEAAEWAFAA
AILQAIAFLLVASALVEMGRRLRRKTRDAPVNPRLRRAATRVVGVTSASC
AILLALRAFITALAAFENR
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mRNA from alignment at M-pyrifera_M_contig77785:85..741-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77785.18294.1 ID=mRNA_M-pyrifera_M_contig77785.18294.1|Name=mRNA_M-pyrifera_M_contig77785.18294.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=657bp|location=Sequence derived from alignment at M-pyrifera_M_contig77785:85..741- (Macrocystis pyrifera P11B4 male)
CTGGGTGTGGTGTACAGCGTGTGCAGCGTGGTGGCTGTGTTGCTGTTGGT
GCGCGCGCACGTGCGTTCTCCGCCGTGGACTGCTCCGAAGCTGATTTTGG
GGTGTTGTGCGGGGGCCCTGGCGGGCCGCGCTGCGTTCCTCTTCTCGGCG
GACCGGTGGGACGGGCTGTCTTGGGCCGTGCACCCCGCAGCGCTTGATCC
TGGGGACGCAATCGTGCACGGATTGGGGGAGGTGCCTGGTTTGCTGCTTC
TGGGCGCTTGCGTGCTGGTTCTGGTGCGGTGGGTCGACGCCTTCGGGGGC
TACACGGCGCAGGGGGCCGCGAGAGTGCGCAGAATGTACCGCCCAGTGGT
GTTATTTGGTGGAATCGCCATCGCAATCGCCCAAATCGCCATTTGGTCTG
CGTACGCCGTGTCGTCGGCGCTGGAGGCTGCAGAGTGGGCCTTCGCGGCA
GCCATCCTGCAGGCCATCGCCTTCCTCTTGGTCGCTTCGGCCCTCGTGGA
GATGGGAAGGAGGTTGCGGAGGAAAACAAGAGACGCTCCAGTCAACCCCA
GGCTCAGAAGAGCCGCCACCAGGGTCGTGGGAGTCACCTCCGCCTCCTGC
GCCATCCTCCTCGCGCTACGAGCGTTCATCACCGCACTTGCAGCCTTCGA
AAACAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77785:85..741-

>mRNA_M-pyrifera_M_contig77785.18294.1 ID=mRNA_M-pyrifera_M_contig77785.18294.1|Name=mRNA_M-pyrifera_M_contig77785.18294.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1314bp|location=Sequence derived from alignment at M-pyrifera_M_contig77785:85..741- (Macrocystis pyrifera P11B4 male)
CTGGGTGTGGTGTACAGCGTGTGCAGCGTGGTGGCTGTGTTGCTGTTGGT
GCGCGCGCACGTGCGTTCTCCGCCGTGGACTGCTCCGAAGCTGATTTTGG
GGTGTTGTGCGGGGGCCCTGGCGGGCCGCGCTGCGTTCCTCTTCTCGGCG
GACCGGTGGGACGGGCTGTCTTGGGCCGTGCACCCCGCAGCGCTTGATCC
TGGGGACGCAATCGTGCACGGATTGGGGGAGGTGCCTGGTTTGCTGCTTC
TGGGCGCTTGCGTGCTGGTTCTGGTGCGGTGGGTCGACGCCTTCGGGGGC
TACACGGCGCAGGGGGCCGCGAGAGTGCGCAGAATGTACCGCCCAGTGGT
GTTATTTGGTGGAATCGCCATCGCAATCGCCCAAATCGCCATTTGGTCTG
CGTACGCCGTGTCGTCGGCGCTGGAGGCTGCAGAGTGGGCCTTCGCGGCA
GCCATCCTGCAGGCCATCGCCTTCCTCTTGGTCGCTTCGGCCCTCGTGGA
GATGGGAAGGAGGTTGCGGAGGAAAACAAGAGACGCTCCAGTCAACCCCA
GGCTCAGAAGAGCCGCCACCAGGGTCGTGGGAGTCACCTCCGCCTCCTGC
GCCATCCTCCTCGCGCTACGAGCGTTCATCACCGCACTTGCAGCCTTCGA
AAACAGACTGGGTGTGGTGTACAGCGTGTGCAGCGTGGTGGCTGTGTTGC
TGTTGGTGCGCGCGCACGTGCGTTCTCCGCCGTGGACTGCTCCGAAGCTG
ATTTTGGGGTGTTGTGCGGGGGCCCTGGCGGGCCGCGCTGCGTTCCTCTT
CTCGGCGGACCGGTGGGACGGGCTGTCTTGGGCCGTGCACCCCGCAGCGC
TTGATCCTGGGGACGCAATCGTGCACGGATTGGGGGAGGTGCCTGGTTTG
CTGCTTCTGGGCGCTTGCGTGCTGGTTCTGGTGCGGTGGGTCGACGCCTT
CGGGGGCTACACGGCGCAGGGGGCCGCGAGAGTGCGCAGAATGTACCGCC
CAGTGGTGTTATTTGGTGGAATCGCCATCGCAATCGCCCAAATCGCCATT
TGGTCTGCGTACGCCGTGTCGTCGGCGCTGGAGGCTGCAGAGTGGGCCTT
CGCGGCAGCCATCCTGCAGGCCATCGCCTTCCTCTTGGTCGCTTCGGCCC
TCGTGGAGATGGGAAGGAGGTTGCGGAGGAAAACAAGAGACGCTCCAGTC
AACCCCAGGCTCAGAAGAGCCGCCACCAGGGTCGTGGGAGTCACCTCCGC
CTCCTGCGCCATCCTCCTCGCGCTACGAGCGTTCATCACCGCACTTGCAG
CCTTCGAAAACAGA
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