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Homology
BLAST of mRNA_M-pyrifera_M_contig77707.18283.1 vs. uniprot
Match: A0A8J1Y563_OWEFU (Ofus.G15574 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y563_OWEFU) HSP 1 Score: 70.5 bits (171), Expect = 4.810e-12 Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 1 Query: 4 NHSSEFFLRARYVYDRELQAIRQTEEVEADEERGFFDELYLFKTRKMYSTDLRTKECRVHDIPSNFPFPEHVVPEEAEYFGPLTIG--VERDEVLVNSFHLRDEREEGYDIFHVTRPAPGTDFCGFVSHDHFSNATGYTTFRFFNVTMGAS-PSEFTPPSEC 480
+H+ +F RA+ YD + R+TE V + + F+D L L K R + D+RTK+C ++ +PF +PE A +G IG + VL+N + + + D C V ++ N YT++ F++VT+G S P+ F PPS C
Sbjct: 35 DHTDDFSSRAKLSYDAFGERSRETETVYMNGKEAFYDILRLHKERVEFVVDIRTKKCERREL--TYPFRPFEIPENARSYGEAYIGGSLLGSGVLINQWEANMPNDAKW------TGQWAIDGCIPVYDHYWHNYVNYTSYHFYDVTLGISDPNVFIPPSTC 188
BLAST of mRNA_M-pyrifera_M_contig77707.18283.1 vs. uniprot
Match: A0A1S3JUV3_LINUN (mammalian ependymin-related protein 1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JUV3_LINUN) HSP 1 Score: 64.7 bits (156), Expect = 7.600e-10 Identity = 55/160 (34.38%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 10 SSEFFLRARYVYDRELQAIRQTEEVEADEERGFFDELYLFKTRKMYSTDLRTKECRVHDIPSNFPFPEHVVPEEAEYFGPLTIG--VERDEVLVNSFHLRDEREEGYDIFHVTRPAPGTDFCGFVSHDHFSNATGYTTFRFFNVTMGAS-PSEFTPPSEC 480
+ +F RA YD Q IR+ EEV +E+R ++D L+L Y +LRTK C V + PF + +P A+ G IG V D VLV+ + E+ Y T PA C VS + ++ G F+NV +G S P+ F PP EC
Sbjct: 38 TKKFAERAHISYDAINQRIRKVEEVYFNEDREYYDVLWLHNEGMEYRLNLRTKMCNVTALTR--PFRKIGIPANAKSGGEAYIGSAVANDGVLVSLWSETTEQGAKY-YGSWTYPA-----CVPVSDYFYDSSVGLVQTHFYNVEVGISDPNRFIPPMEC 189
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Metazoa |
Seed ortholog score | 78.2 |
Seed ortholog evalue | 4e-12 |
Seed eggNOG ortholog | 7739.XP_002596848.1 |
Preferred name | EPDR1 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000323,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 |
EggNOG free text desc. | cell-matrix adhesion |
EggNOG OGs | 2CFST@1,2QQ8T@2759,39UI5@33154,3BJPQ@33208,3D0ZW@33213,47ZNV@7711 |
COG Functional cat. | S |
Best tax level | Chordata |
Best eggNOG OG | NA|NA|NA |
Exons | 1 |
Model size | 486 |
Cds size | 486 |
Stop | 1 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816678.157869-CDS-M-pyrifera_M_contig77707:243..729 | 1622816678.157869-CDS-M-pyrifera_M_contig77707:243..729 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig77707 244..729 - |
1692278114.4307952-CDS-M-pyrifera_M_contig77707:243..729 | 1692278114.4307952-CDS-M-pyrifera_M_contig77707:243..729 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig77707 244..729 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig77707.18283.1 >prot_M-pyrifera_M_contig77707.18283.1 ID=prot_M-pyrifera_M_contig77707.18283.1|Name=mRNA_M-pyrifera_M_contig77707.18283.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
QNHSSEFFLRARYVYDRELQAIRQTEEVEADEERGFFDELYLFKTRKMYS TDLRTKECRVHDIPSNFPFPEHVVPEEAEYFGPLTIGVERDEVLVNSFHL RDEREEGYDIFHVTRPAPGTDFCGFVSHDHFSNATGYTTFRFFNVTMGAS PSEFTPPSECS* back to topmRNA from alignment at M-pyrifera_M_contig77707:244..729- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig77707.18283.1 ID=mRNA_M-pyrifera_M_contig77707.18283.1|Name=mRNA_M-pyrifera_M_contig77707.18283.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig77707:244..729- (Macrocystis pyrifera P11B4 male) CAGAACCATTCAAGTGAATTCTTCCTTCGTGCCCGCTACGTGTACGATCG
TGAACTTCAAGCCATCCGTCAGACGGAAGAAGTCGAGGCGGACGAAGAAC
GCGGTTTCTTCGACGAACTCTACCTTTTCAAGACCCGCAAGATGTACTCC
ACGGATCTTCGCACCAAGGAATGCCGCGTGCATGACATCCCATCCAACTT
CCCATTCCCAGAGCACGTGGTTCCCGAAGAAGCAGAATACTTTGGCCCGC
TCACCATTGGTGTGGAGCGTGACGAAGTCCTCGTCAACTCCTTCCACTTG
CGTGATGAACGTGAAGAAGGATACGACATCTTCCATGTTACCCGCCCAGC
CCCAGGGACGGATTTCTGCGGCTTTGTCTCGCATGACCATTTCTCCAACG
CCACCGGGTACACCACCTTCCGTTTCTTCAACGTCACCATGGGCGCGTCA
CCATCTGAATTCACCCCACCATCCGAGTGCTCCTAA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig77707:244..729- >mRNA_M-pyrifera_M_contig77707.18283.1 ID=mRNA_M-pyrifera_M_contig77707.18283.1|Name=mRNA_M-pyrifera_M_contig77707.18283.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig77707:244..729- (Macrocystis pyrifera P11B4 male) CAGAACCATTCAAGTGAATTCTTCCTTCGTGCCCGCTACGTGTACGATCG TGAACTTCAAGCCATCCGTCAGACGGAAGAAGTCGAGGCGGACGAAGAAC GCGGTTTCTTCGACGAACTCTACCTTTTCAAGACCCGCAAGATGTACTCC ACGGATCTTCGCACCAAGGAATGCCGCGTGCATGACATCCCATCCAACTT CCCATTCCCAGAGCACGTGGTTCCCGAAGAAGCAGAATACTTTGGCCCGC TCACCATTGGTGTGGAGCGTGACGAAGTCCTCGTCAACTCCTTCCACTTG CGTGATGAACGTGAAGAAGGATACGACATCTTCCATGTTACCCGCCCAGC CCCAGGGACGGATTTCTGCGGCTTTGTCTCGCATGACCATTTCTCCAACG CCACCGGGTACACCACCTTCCGTTTCTTCAACGTCACCATGGGCGCGTCA CCATCTGAATTCACCCCACCATCCGAGTGCTCCTAACAGAACCATTCAAG TGAATTCTTCCTTCGTGCCCGCTACGTGTACGATCGTGAACTTCAAGCCA TCCGTCAGACGGAAGAAGTCGAGGCGGACGAAGAACGCGGTTTCTTCGAC GAACTCTACCTTTTCAAGACCCGCAAGATGTACTCCACGGATCTTCGCAC CAAGGAATGCCGCGTGCATGACATCCCATCCAACTTCCCATTCCCAGAGC ACGTGGTTCCCGAAGAAGCAGAATACTTTGGCCCGCTCACCATTGGTGTG GAGCGTGACGAAGTCCTCGTCAACTCCTTCCACTTGCGTGATGAACGTGA AGAAGGATACGACATCTTCCATGTTACCCGCCCAGCCCCAGGGACGGATT TCTGCGGCTTTGTCTCGCATGACCATTTCTCCAACGCCACCGGGTACACC ACCTTCCGTTTCTTCAACGTCACCATGGGCGCGTCACCATCTGAATTCAC CCCACCATCCGAGTGCTCCTAA back to top
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