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Homology
BLAST of mRNA_M-pyrifera_M_contig77370.18218.1 vs. uniprot
Match: A0A7Y2IFE7_9ACTN (OmpA family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IFE7_9ACTN) HSP 1 Score: 93.6 bits (231), Expect = 7.110e-20 Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1 Query: 4 TVTLTGAVPDEGARRQLVDLATARYGEGNVIDSLTIDENTTLTGGTITTSGTATDGDQNPQGLQSDVAAALGLTESGLDVSFEAAPVVSVDAEAALSAGSVVLTGVLPDQASIDSMTASAEDVWGADNVDASGLTI 411
T TL+G VPDEGAR QLV +A +G GNV+D LTID L GTI G + GD P+ L+ A LGLT D+S V A+ SVVLTG +PD+A++ + A+AE +G NVD +GL I
Sbjct: 77 TATLSGTVPDEGARIQLVRIAEDEFGRGNVVDDLTIDPGVDLATGTIDIRGVSETGDDAPEILRLTAHAQLGLTPGEFDISSVDPAVDPAVVLMAVEGDSVVLTGTVPDEATVRRLIAAAEAAYGDGNVDGTGLEI 212
BLAST of mRNA_M-pyrifera_M_contig77370.18218.1 vs. uniprot
Match: A0A7Y2DKM5_9ACTN (OmpA family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DKM5_9ACTN) HSP 1 Score: 87.0 bits (214), Expect = 1.740e-17 Identity = 55/134 (41.04%), Postives = 75/134 (55.97%), Query Frame = 1 Query: 10 TLTGAVPDEGARRQLVDLATARYGEGNVIDSLTIDENTTLTGGTITTSGTATDGDQNPQGLQSDVAAALGLTESGLDVSFEAAPVVSVDAEAALSAGSVVLTGVLPDQASIDSMTASAEDVWGADNVDASGLTI 411
T++GAVPDEGAR QL+ +A R+G GNVID LT+D L G I SG A +GD P+ L + A LGL D+ F E + VV+TG +P ++ D + SAE V+G NVD +G+ +
Sbjct: 79 TISGAVPDEGARAQLIRIAEDRFGNGNVIDELTVDPGIDLKTGVINFSGIADEGDLAPEQLLLNAGADLGLAAGRFDLEFVEPQFEPAVIEIVVGELPVVVTGTVPTESDRDRLVQSAEAVYGEGNVDVAGVVV 212
BLAST of mRNA_M-pyrifera_M_contig77370.18218.1 vs. uniprot
Match: A0A7Y2DBQ7_9ACTN (OmpA family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DBQ7_9ACTN) HSP 1 Score: 60.1 bits (144), Expect = 6.880e-8 Identity = 45/130 (34.62%), Postives = 68/130 (52.31%), Query Frame = 1 Query: 7 VTLTGAVPDEGARRQLVDLATARYGEGNVIDSLTIDENTTLTGGTITTSGTATDGDQNPQGLQSDVAAALGLTESGLDVS--FEAAPVVSVDAEAALSAGSVVLTGVLPDQASIDSMTASAEDVWGADNV 390
+TL G VPD + A +GEGNV+++LTID+ TT GGT+T GT G ++ + D A L T +G +V + VV A+ +V LTG +PD+ + + A ++GA+NV
Sbjct: 77 ITLDGVVPDAATSEAMEAKAVEVFGEGNVVNNLTIDDTTTTAGGTVTIVGTV--GGESSRERVVDAFAPL-ATGAGYEVDDQIQVNEVVPSAVVMAIDGDTVTLTGAVPDEGTKGELNGLASTIFGAENV 203
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 414 |
Cds size | 414 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816674.4818306-CDS-M-pyrifera_M_contig77370:593..1007 | 1622816674.4818306-CDS-M-pyrifera_M_contig77370:593..1007 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig77370 594..1007 + |
1692278112.2359986-CDS-M-pyrifera_M_contig77370:593..1007 | 1692278112.2359986-CDS-M-pyrifera_M_contig77370:593..1007 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig77370 594..1007 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig77370.18218.1 >prot_M-pyrifera_M_contig77370.18218.1 ID=prot_M-pyrifera_M_contig77370.18218.1|Name=mRNA_M-pyrifera_M_contig77370.18218.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
GTVTLTGAVPDEGARRQLVDLATARYGEGNVIDSLTIDENTTLTGGTITT SGTATDGDQNPQGLQSDVAAALGLTESGLDVSFEAAPVVSVDAEAALSAG SVVLTGVLPDQASIDSMTASAEDVWGADNVDASGLTIG back to topmRNA from alignment at M-pyrifera_M_contig77370:594..1007+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig77370.18218.1 ID=mRNA_M-pyrifera_M_contig77370.18218.1|Name=mRNA_M-pyrifera_M_contig77370.18218.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig77370:594..1007+ (Macrocystis pyrifera P11B4 male) GGCACGGTCACCCTCACCGGCGCCGTGCCCGACGAAGGCGCTCGGCGCCA
GTTGGTCGATCTCGCCACCGCTCGCTACGGCGAGGGCAATGTGATCGACT
CGCTCACCATCGACGAGAACACCACGCTCACCGGCGGCACGATCACCACG
AGCGGCACCGCCACCGACGGCGACCAGAATCCGCAGGGACTCCAGAGCGA
TGTCGCCGCAGCGCTCGGGCTGACCGAATCCGGGCTCGACGTCTCGTTCG
AGGCCGCTCCGGTCGTGTCGGTCGATGCCGAGGCAGCCCTTTCGGCCGGC
TCGGTCGTCCTGACCGGCGTGTTGCCGGACCAGGCCTCGATCGACTCGAT
GACCGCCTCAGCCGAGGACGTGTGGGGCGCCGACAACGTCGACGCTTCCG
GCCTCACCATCGGC back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig77370:594..1007+ >mRNA_M-pyrifera_M_contig77370.18218.1 ID=mRNA_M-pyrifera_M_contig77370.18218.1|Name=mRNA_M-pyrifera_M_contig77370.18218.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig77370:594..1007+ (Macrocystis pyrifera P11B4 male) GGCACGGTCACCCTCACCGGCGCCGTGCCCGACGAAGGCGCTCGGCGCCA GTTGGTCGATCTCGCCACCGCTCGCTACGGCGAGGGCAATGTGATCGACT CGCTCACCATCGACGAGAACACCACGCTCACCGGCGGCACGATCACCACG AGCGGCACCGCCACCGACGGCGACCAGAATCCGCAGGGACTCCAGAGCGA TGTCGCCGCAGCGCTCGGGCTGACCGAATCCGGGCTCGACGTCTCGTTCG AGGCCGCTCCGGTCGTGTCGGTCGATGCCGAGGCAGCCCTTTCGGCCGGC TCGGTCGTCCTGACCGGCGTGTTGCCGGACCAGGCCTCGATCGACTCGAT GACCGCCTCAGCCGAGGACGTGTGGGGCGCCGACAACGTCGACGCTTCCG GCCTCACCATCGGCGGCACGGTCACCCTCACCGGCGCCGTGCCCGACGAA GGCGCTCGGCGCCAGTTGGTCGATCTCGCCACCGCTCGCTACGGCGAGGG CAATGTGATCGACTCGCTCACCATCGACGAGAACACCACGCTCACCGGCG GCACGATCACCACGAGCGGCACCGCCACCGACGGCGACCAGAATCCGCAG GGACTCCAGAGCGATGTCGCCGCAGCGCTCGGGCTGACCGAATCCGGGCT CGACGTCTCGTTCGAGGCCGCTCCGGTCGTGTCGGTCGATGCCGAGGCAG CCCTTTCGGCCGGCTCGGTCGTCCTGACCGGCGTGTTGCCGGACCAGGCC TCGATCGACTCGATGACCGCCTCAGCCGAGGACGTGTGGGGCGCCGACAA CGTCGACGCTTCCGGCCTCACCATCGGC back to top
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