mRNA_M-pyrifera_M_contig77280.18206.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77280.18206.1
Unique NamemRNA_M-pyrifera_M_contig77280.18206.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Match: UPI001AFB0579 (Uncharacterized protein n=1 Tax=Agreia sp. COWG TaxID=2773266 RepID=UPI001AFB0579)

HSP 1 Score: 59.7 bits (143), Expect = 6.920e-11
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 TREWRNWQTRRLQVPVPERVWGFKSPLAHNGDDVERG 111
            +REWRNWQTR LQVPV ER WGFKSPLAH  D+++ G
Sbjct:   20 SREWRNWQTRWLQVPVLERAWGFKSPLAH-ADNMKAG 55
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BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Match: A0A1Y5P2D5_9MICO (Uncharacterized protein n=1 Tax=uncultured Microbacterium sp. TaxID=191216 RepID=A0A1Y5P2D5_9MICO)

HSP 1 Score: 58.2 bits (139), Expect = 4.450e-10
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 TREWRNWQTRRLQVPVPERVWGFKSPLAHNG 93
            +REWRN QTR LQVPVPER WGF SPLAH+G
Sbjct:   36 SREWRNRQTRWLQVPVPERAWGFNSPLAHSG 66
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BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Match: A0A382ARJ0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382ARJ0_9ZZZZ)

HSP 1 Score: 57.4 bits (137), Expect = 5.970e-10
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = -1 
Query:    4 VREGGLEPPHPFGHRHLKPARLPIPPLA 87
            VREGG EPPHPFGHR+L PARLP+PPLA
Sbjct:    1 VREGGFEPPHPFGHRNLNPARLPVPPLA 28
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BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Match: A0A653VAU6_9MICC (Uncharacterized protein n=1 Tax=Citricoccus sp. K5 TaxID=2653135 RepID=A0A653VAU6_9MICC)

HSP 1 Score: 57.8 bits (138), Expect = 9.050e-10
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = -1 
Query:    1 VTVVREGGLEPPHPFGHRHLKPARLPIPPLAR 96
            +T VREGGLEPP PF H HLKPARLPIPPLAR
Sbjct:    1 MTRVREGGLEPPRPFEHWHLKPARLPIPPLAR 32
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BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Match: F2RD16_STRVP (Uncharacterized protein n=1 Tax=Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) TaxID=953739 RepID=F2RD16_STRVP)

HSP 1 Score: 51.6 bits (122), Expect = 6.960e-8
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:    4 REWRNWQTRRLQVPVPERVWGFKSPLAH 87
            R WRN QTR +QVPVPER WGF SPLAH
Sbjct:    2 RGWRNRQTRWIQVPVPERAWGFNSPLAH 29
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BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Match: A0A2P2BY16_9ZZZZ (Uncharacterized protein n=1 Tax=metagenome TaxID=256318 RepID=A0A2P2BY16_9ZZZZ)

HSP 1 Score: 52.4 bits (124), Expect = 1.130e-6
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 TREWRNWQTRRLQVPVPERVWGFKSPLAHN 90
            TREWRN QTR +QV V ER WGF SPLAHN
Sbjct:  224 TREWRNRQTRTVQVRVSERTWGFNSPLAHN 253
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BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Match: A0A173LYG4_9MICO (Uncharacterized protein n=1 Tax=Aurantimicrobium minutum TaxID=708131 RepID=A0A173LYG4_9MICO)

HSP 1 Score: 48.9 bits (115), Expect = 1.770e-6
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 1 
Query:   19 WQTRRLQVPVPERVWGFKSPLAH 87
            WQTR LQVPVP R WGFKSPLAH
Sbjct:   15 WQTRWLQVPVPARAWGFKSPLAH 37
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BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Match: A0A381PTQ7_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381PTQ7_9ZZZZ)

HSP 1 Score: 48.5 bits (114), Expect = 1.600e-5
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 3 
Query:    9 VAELADAQASGACARKGVGVQVPPRA 86
            VAELADAQASGACARKGV VQVPPRA
Sbjct:    1 VAELADAQASGACARKGVRVQVPPRA 26
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BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Match: A0A445NAS6_STRNE (Uncharacterized protein n=1 Tax=Streptomyces netropsis TaxID=55404 RepID=A0A445NAS6_STRNE)

HSP 1 Score: 48.9 bits (115), Expect = 1.710e-5
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 2 
Query:    5 ASGGIGRRAGFRCLCPKGCGGSSPPSRT 88
            A GGIGRRAGFR  CPKG GGS+PPSRT
Sbjct:   78 AGGGIGRRAGFRFQCPKGRGGSTPPSRT 105
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BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Match: A0A1V1W0M9_9ACTN (Ph-response regulator protein palh rim21 n=1 Tax=Nocardioides sp. PD653 TaxID=393303 RepID=A0A1V1W0M9_9ACTN)

HSP 1 Score: 45.8 bits (107), Expect = 5.720e-5
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   22 QTRRLQVPVPERVWGFKSPLAH---NGDDV 102
            QTR LQVPV ER WGFKSPLAH    GDD+
Sbjct:   65 QTRWLQVPVSERAWGFKSPLAHVSSPGDDL 94
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77280.18206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI001AFB05796.920e-1172.97Uncharacterized protein n=1 Tax=Agreia sp. COWG Ta... [more]
A0A1Y5P2D5_9MICO4.450e-1080.65Uncharacterized protein n=1 Tax=uncultured Microba... [more]
A0A382ARJ0_9ZZZZ5.970e-1085.71Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A653VAU6_9MICC9.050e-1084.38Uncharacterized protein n=1 Tax=Citricoccus sp. K5... [more]
F2RD16_STRVP6.960e-878.57Uncharacterized protein n=1 Tax=Streptomyces venez... [more]
A0A2P2BY16_9ZZZZ1.130e-676.67Uncharacterized protein n=1 Tax=metagenome TaxID=2... [more]
A0A173LYG4_9MICO1.770e-686.96Uncharacterized protein n=1 Tax=Aurantimicrobium m... [more]
A0A381PTQ7_9ZZZZ1.600e-596.15Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A445NAS6_STRNE1.710e-582.14Uncharacterized protein n=1 Tax=Streptomyces netro... [more]
A0A1V1W0M9_9ACTN5.720e-573.33Ph-response regulator protein palh rim21 n=1 Tax=N... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77280contigM-pyrifera_M_contig77280:191..325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.7757745-CDS-M-pyrifera_M_contig77280:190..3251622816673.7757745-CDS-M-pyrifera_M_contig77280:190..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77280 191..325 -
1692278111.8016086-CDS-M-pyrifera_M_contig77280:190..3251692278111.8016086-CDS-M-pyrifera_M_contig77280:190..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77280 191..325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77280.18206.1prot_M-pyrifera_M_contig77280.18206.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77280 191..325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77280.18206.1

>prot_M-pyrifera_M_contig77280.18206.1 ID=prot_M-pyrifera_M_contig77280.18206.1|Name=mRNA_M-pyrifera_M_contig77280.18206.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
TREWRNWQTRRLQVPVPERVWGFKSPLAHNGDDVERGRRFRRPRG
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mRNA from alignment at M-pyrifera_M_contig77280:191..325-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77280.18206.1 ID=mRNA_M-pyrifera_M_contig77280.18206.1|Name=mRNA_M-pyrifera_M_contig77280.18206.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig77280:191..325- (Macrocystis pyrifera P11B4 male)
ACGCGCGAGTGGCGGAATTGGCAGACGCGCAGGCTTCAGGTGCCTGTGCC
CGAAAGGGTGTGGGGGTTCAAGTCCCCCCTCGCGCACAACGGTGACGACG
TGGAACGCGGCCGGCGTTTCCGCCGGCCGCGTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77280:191..325-

>mRNA_M-pyrifera_M_contig77280.18206.1 ID=mRNA_M-pyrifera_M_contig77280.18206.1|Name=mRNA_M-pyrifera_M_contig77280.18206.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig77280:191..325- (Macrocystis pyrifera P11B4 male)
ACGCGCGAGTGGCGGAATTGGCAGACGCGCAGGCTTCAGGTGCCTGTGCC
CGAAAGGGTGTGGGGGTTCAAGTCCCCCCTCGCGCACAACGGTGACGACG
TGGAACGCGGCCGGCGTTTCCGCCGGCCGCGTGGTACGCGCGAGTGGCGG
AATTGGCAGACGCGCAGGCTTCAGGTGCCTGTGCCCGAAAGGGTGTGGGG
GTTCAAGTCCCCCCTCGCGCACAACGGTGACGACGTGGAACGCGGCCGGC
GTTTCCGCCGGCCGCGTGGT
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