Homology
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match:
A0A2G2CHE3_9SPHN (17 kDa surface antigen n=2 Tax=Sphingomonadales TaxID=204457 RepID=A0A2G2CHE3_9SPHN)
HSP 1 Score: 93.2 bits (230), Expect = 1.880e-22
Identity = 84/103 (81.55%), Postives = 86/103 (83.50%), Query Frame = 1
Query: 1 YEQVRNNGYREYRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXX-----YRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
Y+QVR NGYREYRRGD Y RYRDRR+XXXXXXXXXXXXXXXXX YRGC RGTGGTIIGAIAGGLLGNEVA RGDK XXXXXXXXXXX AIDGNC
Sbjct: 19 YQQVRGNGYREYRRGDTYXXHRYRDRRHXXXXXXXXXXXXXXXXXXXDRRYRGCDRGTGGTIIGAIAGGLLGNEVARRGDKTEXXXXXXXXXXXAGRAIDGNC 121
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match:
UPI001593B9D2 (glycine zipper 2TM domain-containing protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001593B9D2)
HSP 1 Score: 75.1 bits (183), Expect = 3.330e-15
Identity = 78/98 (79.59%), Postives = 79/98 (80.61%), Query Frame = 1
Query: 1 YEQVRNNGYREYRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXXYRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
YEQ RN+G R YRR RDRR XXXXXXXXXXXXXXXXX RGC RGTGGTIIGAIAGGLLGNEVAGRG K XXXXXXXXXXXXX AIDGNC
Sbjct: 37 YEQARNDGRRVYRRXXXXXXXXXRDRRDXXXXXXXXXXXXXXXXXXRGCDRGTGGTIIGAIAGGLLGNEVAGRGSKTEXXXXXXXXXXXXXRAIDGNC 134
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match:
A0A1N6GZW5_9SPHN (17 kDa surface antigen n=1 Tax=Parasphingorhabdus marina DSM 22363 TaxID=1123272 RepID=A0A1N6GZW5_9SPHN)
HSP 1 Score: 73.6 bits (179), Expect = 1.370e-14
Identity = 74/89 (83.15%), Postives = 75/89 (84.27%), Query Frame = 1
Query: 28 REYRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXXYRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
R YRRGD YRG RY DRR XXXXXXXXXXXXXXXXX GC RGTGGTIIGAIAGGLLGNE+A RGDK XXXXXXXXXXX AIDGNC
Sbjct: 48 RYYRRGDYYRGDRYYDRR-XXXXXXXXXXXXXXXXXXXGCDRGTGGTIIGAIAGGLLGNEIARRGDKTEXXXXXXXXXXXAGRAIDGNC 135
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match:
A0A6H2DRM8_9SPHN (17 kDa surface antigen n=2 Tax=Parasphingorhabdus halotolerans TaxID=2725558 RepID=A0A6H2DRM8_9SPHN)
HSP 1 Score: 72.0 bits (175), Expect = 3.440e-14
Identity = 78/99 (78.79%), Postives = 80/99 (80.81%), Query Frame = 1
Query: 1 YEQVRN-NGYREYRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXXYRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
Y+QV N +GYREYRRGD YR R XXXXXXXXXXXXXXXXX GC RGTGGTIIGAIAGGLLGNEVA RGDK XXXXXXXXXXXX AIDGNC
Sbjct: 19 YQQVGNRDGYREYRRGDYYRNDRXXXXX-XXXXXXXXXXXXXXXXXXXGCDRGTGGTIIGAIAGGLLGNEVARRGDKTVXXXXXXXXXXXXGRAIDGNC 116
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match:
A0A127MGA8_9SPHN (17 kDa surface antigen n=5 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A127MGA8_9SPHN)
HSP 1 Score: 65.9 bits (159), Expect = 1.340e-11
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 1
Query: 139 RGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
RGC RGTGGTIIGAIAGGLLGNE+AGRGDK XXXXXXXXXX AIDGNC
Sbjct: 83 RGCDRGTGGTIIGAIAGGLLGNEIAGRGDKTEXXXXXXXXXXLAGRAIDGNC 134
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match:
UPI001E64A073 (glycine zipper 2TM domain-containing protein n=4 Tax=Sphingomonadaceae TaxID=41297 RepID=UPI001E64A073)
HSP 1 Score: 64.7 bits (156), Expect = 4.490e-11
Identity = 66/112 (58.93%), Postives = 67/112 (59.82%), Query Frame = 1
Query: 1 YEQVRNNGY--------REYRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXXYR------GCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
Y Q N+GY R YRRGD YR RY DR XXXXXXXXXXXXXXXXX GC RGTGGTIIGAIAGGLLGNEVAGRG K AID NC
Sbjct: 31 YYQGYNDGYYQRVGDDRRYYRRGDYYRDDRYYDRXXXXXXXXXXXXXXXXXXXXXXXXXXXGCDRGTGGTIIGAIAGGLLGNEVAGRGSKTEGAIIGGAVGALAGRAIDRNC 142
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match:
A0A2W6TGC6_SPHSX (17 kDa surface antigen n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=A0A2W6TGC6_SPHSX)
HSP 1 Score: 58.9 bits (141), Expect = 5.920e-9
Identity = 53/100 (53.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query: 1 YEQVRNNGYRE--YRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXXYRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
Y+Q+ GY Y RGD RG Y DR YXXXXXXXXXXX C +GTGGTIIGAIAGGLLGN VAGRGD+ AID +C
Sbjct: 34 YQQIDQRGYERDGYDRGDSRRGYGYDDRGYXXXXXXXXXXXRGRGR----CDKGTGGTIIGAIAGGLLGNSVAGRGDRGVGTIVGAGVGALAGRAIDRDC 129
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match:
A0A6M5J894_9SPHN (17 kDa surface antigen n=1 Tax=Sphingomonas sp. AP4-R1 TaxID=2735134 RepID=A0A6M5J894_9SPHN)
HSP 1 Score: 54.3 bits (129), Expect = 3.630e-7
Identity = 31/56 (55.36%), Postives = 34/56 (60.71%), Query Frame = 1
Query: 136 YRG---CGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
YRG C +GTGGTIIGAIAGGLLGN VAGRGD+ AID +C
Sbjct: 74 YRGRGRCDKGTGGTIIGAIAGGLLGNSVAGRGDRGVGTIVGAGVGALAGRAIDRDC 129
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match:
A0A239HWR0_9SPHN (17 kDa surface antigen n=1 Tax=Sphingopyxis indica TaxID=436663 RepID=A0A239HWR0_9SPHN)
HSP 1 Score: 53.1 bits (126), Expect = 1.110e-6
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1
Query: 136 YRGCGRGTGGTIIGAIAGGLLGNEVAGRGDK 228
YR C GTGGT+IGAIAGGL GNE+AGRGDK
Sbjct: 78 YRQCDNGTGGTVIGAIAGGLAGNEIAGRGDK 108
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match:
UPI001575C56C (glycine zipper 2TM domain-containing protein n=1 Tax=Sphingomonas bacterium TaxID=1895847 RepID=UPI001575C56C)
HSP 1 Score: 52.4 bits (124), Expect = 1.320e-6
Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 1
Query: 136 YRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
YR C +GTGGTI+GAIAGGLLGN +AGRGD+ ID C
Sbjct: 56 YRRCDKGTGGTILGAIAGGLLGNGIAGRGDRGVGTIVGAGVGALAGREIDRGC 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90 )
Total hits: 25
0 1 Expect = 1.88e-22 / Id = 81.55 Expect = 3.33e-15 / Id = 79.59 Expect = 1.37e-14 / Id = 83.15 Expect = 3.44e-14 / Id = 78.79 Expect = 1.34e-11 / Id = 84.62 Expect = 4.49e-11 / Id = 58.93 Expect = 5.92e-9 / Id = 53.00 Expect = 3.63e-7 / Id = 55.36 Expect = 1.11e-6 / Id = 80.65 Expect = 1.32e-6 / Id = 50.94 Sequence A0A2G2CHE3_9SPHN UPI001593B9D2 A0A1N6GZW5_9SPHN A0A6H2DRM8_9SPHN A0A127MGA8_9SPHN UPI001E64A073 A0A2W6TGC6_SPHSX A0A6M5J894_9SPHN A0A239HWR0_9SPHN UPI001575C56C
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig76795.18096.1
>prot_M-pyrifera_M_contig76795.18096.1 ID=prot_M-pyrifera_M_contig76795.18096.1|Name=mRNA_M-pyrifera_M_contig76795.18096.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
YEQVRNNGYREYRRGDIYRGKRYRDRRYYRDDRRYRDRRSYSDRRYRGCG RGTGGTIIGAIAGGLLGNEVAGRGDKTEGTIIGGAVGALAGRAIDGNC* back to top mRNA from alignment at M-pyrifera_M_contig76795:15..311+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76795.18096.1 ID=mRNA_M-pyrifera_M_contig76795.18096.1|Name=mRNA_M-pyrifera_M_contig76795.18096.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig76795:15..311+ (Macrocystis pyrifera P11B4 male)TATGAGCAAGTCCGTAACAATGGATATCGCGAATATCGACGCGGGGATAT
CTATCGCGGCAAACGCTATCGGGATCGCCGCTACTATCGGGATGATCGCC
GCTATCGTGATCGTCGATCTTATAGTGATCGCCGCTACCGTGGATGCGGC
CGCGGGACGGGCGGAACGATTATTGGTGCGATAGCCGGCGGACTGCTGGG
CAACGAAGTGGCTGGCCGCGGTGACAAAACCGAAGGAACGATTATCGGCG
GAGCAGTCGGTGCTCTCGCGGGGCGTGCCATCGACGGCAATTGCTGA back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig76795:15..311+
>mRNA_M-pyrifera_M_contig76795.18096.1 ID=mRNA_M-pyrifera_M_contig76795.18096.1|Name=mRNA_M-pyrifera_M_contig76795.18096.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig76795:15..311+ (Macrocystis pyrifera P11B4 male) TATGAGCAAGTCCGTAACAATGGATATCGCGAATATCGACGCGGGGATAT CTATCGCGGCAAACGCTATCGGGATCGCCGCTACTATCGGGATGATCGCC GCTATCGTGATCGTCGATCTTATAGTGATCGCCGCTACCGTGGATGCGGC CGCGGGACGGGCGGAACGATTATTGGTGCGATAGCCGGCGGACTGCTGGG CAACGAAGTGGCTGGCCGCGGTGACAAAACCGAAGGAACGATTATCGGCG GAGCAGTCGGTGCTCTCGCGGGGCGTGCCATCGACGGCAATTGCTGATAT GAGCAAGTCCGTAACAATGGATATCGCGAATATCGACGCGGGGATATCTA TCGCGGCAAACGCTATCGGGATCGCCGCTACTATCGGGATGATCGCCGCT ATCGTGATCGTCGATCTTATAGTGATCGCCGCTACCGTGGATGCGGCCGC GGGACGGGCGGAACGATTATTGGTGCGATAGCCGGCGGACTGCTGGGCAA CGAAGTGGCTGGCCGCGGTGACAAAACCGAAGGAACGATTATCGGCGGAG CAGTCGGTGCTCTCGCGGGGCGTGCCATCGACGGCAATTGCTGA back to top