mRNA_M-pyrifera_M_contig76790.18093.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76790.18093.1
Unique NamemRNA_M-pyrifera_M_contig76790.18093.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Match: A0A5A8DCT2_CAFRO (Purple acid phosphatase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DCT2_CAFRO)

HSP 1 Score: 101 bits (252), Expect = 9.550e-23
Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    1 LGLIEQLLMDYKVDFSFYGHVHNAQLFCPM---FNNSQCLPDTPS-TFTAPRHAVIGNAGQELSPFPKLDNRTLFSYEGYGWNEIIANATQLTLRFFADSNSSLLYEETVHKVYP 333
            LG IE LL ++ V  S YGHVHN+Q++CP     N ++C   T +  +T   H+VIGNAGQ LS FP LD+RT+F    +G++ + AN+T LT R++AD   +L ++ TV + YP
Sbjct:  446 LGQIEPLLDEHHVTLSLYGHVHNSQVWCPFERYSNGTKCASKTLNGPYTGVIHSVIGNAGQTLSKFPNLDDRTIFHAYEHGYSTMTANSTHLTFRYYADVTDTLHFDFTVTQDYP 560          
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Match: R1BJS4_EMIHU (Purple acid phosphatase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BJS4_EMIHU)

HSP 1 Score: 89.7 bits (221), Expect = 1.440e-18
Identity = 52/120 (43.33%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 LGLIEQLLMDYKVDFSFYGHVHNAQLFCPMFNNSQCLPDTPSTFTAPRHAVIGNAGQELSPFPKLDNRTLFS-YEGYGW---NEIIANATQLTLRFFADS----NSSLLYEETVHKVYPR 336
            LG +E LLM YKVD +F+GH+H AQ  CPM   +       + + AP HA+IGNAGQ LS FP    R  +S Y+   W   +  I NAT LTL ++AD+     + L +  TV + YPR
Sbjct:  380 LGDLEPLLMQYKVDIAFWGHIHYAQRSCPMIQGACVTLKDAAGYDAPIHAIIGNAGQSLSTFPDPSARAKWSVYQAKEWGFSHMTIHNATHLTLDYYADAPLDGKAPLHHTVTVKRGYPR 499          
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Match: A0A6P5T3X8_PRUAV (Purple acid phosphatase n=5 Tax=Prunus TaxID=3754 RepID=A0A6P5T3X8_PRUAV)

HSP 1 Score: 67.8 bits (164), Expect = 7.910e-11
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   10 IEQLLMDYKVDFSFYGHVHNAQLFCPMFNNSQCLPDTPS----TFTAPRHAVIGNAGQELSPFPKLD-NRTLFSYEGYGWNEIIA-NATQLTLRFFADSNSSLLYEETVHKVY 330
            +++L   YKVD +FYGHVHN +  CP++ N QC+    S    TF    H V+G AG  LS F ++  N +++    YG+ ++ A N T L   +   S+SS+    TV + Y
Sbjct:  484 LQKLWQKYKVDIAFYGHVHNYERSCPIYQN-QCVTSEKSHFSGTFKGTIHVVVGGAGSHLSDFSQVKPNWSIYRDYDYGFVKLTAFNHTSLLFEYKKSSDSSVHDSFTVSRDY 595          
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Match: M5WZ64_PRUPE (Purple acid phosphatase n=1 Tax=Prunus persica TaxID=3760 RepID=M5WZ64_PRUPE)

HSP 1 Score: 67.8 bits (164), Expect = 8.290e-11
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   10 IEQLLMDYKVDFSFYGHVHNAQLFCPMFNNSQCLPDTPS----TFTAPRHAVIGNAGQELSPFPKLD-NRTLFSYEGYGWNEIIA-NATQLTLRFFADSNSSLLYEETVHKVY 330
            +++L   YKVD +FYGHVHN +  CP++ N QC+    S    TF    H V+G AG  LS F ++  N +++    YG+ ++ A N T L   +   S+SS+    TV + Y
Sbjct:  948 LQKLWQKYKVDIAFYGHVHNYERSCPIYQN-QCVTSEKSHFSGTFKGTIHVVVGGAGSHLSDFSQVKPNWSIYRDYDYGFVKLTAFNHTSLLFEYKKSSDSSVHDSFTVSRDY 1059          
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Match: A0A4Y1RHC0_PRUDU (Purple acid phosphatase n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RHC0_PRUDU)

HSP 1 Score: 66.2 bits (160), Expect = 2.510e-10
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   10 IEQLLMDYKVDFSFYGHVHNAQLFCPMFNNSQCLPDTP----STFTAPRHAVIGNAGQELSPFPKLD-NRTLFSYEGYGWNEIIA-NATQLTLRFFADSNSSLLYEETVHKVY 330
            +++L   YKVD +FYGHVHN +  CP++ N QC+         TF    H V+G AG  LS F ++  N +++    YG+ ++ A N T L   +   S+SS+    TV + Y
Sbjct:  272 LQKLWQKYKVDIAFYGHVHNYERSCPIYQN-QCVTSEKWHFSGTFKGTIHVVVGGAGSHLSDFSQVKPNWSIYRDYDYGFVKLTAFNHTSLLFEYKKSSDSSVHDSFTVSRDY 383          
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Match: UPI000CED1AA2 (probable inactive purple acid phosphatase 27 isoform X2 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED1AA2)

HSP 1 Score: 63.9 bits (154), Expect = 1.740e-9
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 1
Query:   10 IEQLLMDYKVDFSFYGHVHNAQLFCPMFNNSQCLPDTPS----TFTAPRHAVIGNAGQELSPFPKLDNR-TLFSYEGYGWNEIIA-NATQLTLRFFADSNSSLLYEETVHKVY 330
            +++L   YKVD +FYGHVHN +  CP++ N QC+ +  S     F    H V+G AG  LS F  L  + ++F    YG+ ++ A + + L   +   SN  +    TV + Y
Sbjct:  410 LQKLWQKYKVDIAFYGHVHNYERTCPIYQN-QCMDNEKSYYSGAFKGTIHVVVGGAGSHLSSFSSLKPKWSIFRDYDYGFVKLTAFDHSSLLFEYKKSSNGEVYDSFTVSREY 521          
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Match: UPI0018F7FB36 (probable inactive purple acid phosphatase 27 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F7FB36)

HSP 1 Score: 63.9 bits (154), Expect = 1.770e-9
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = 1
Query:   10 IEQLLMDYKVDFSFYGHVHNAQLFCPMFNNSQCLPDTPS----TFTAPRHAVIGNAGQELSPFPKLDNR-TLFSYEGYGWNEIIA-NATQLTLRFFADSNSSLLYEETVHKVY 330
            +++L   YKVD +FYGHVHN +  CPM+ N QC+    S    T     H V G  G  LS F +L    +LF  E YG+ ++ A N + L L +   S+  +    T+ + Y
Sbjct:  493 LQKLWQKYKVDIAFYGHVHNYERTCPMYQN-QCVNTEQSHYSGTVNGTIHVVAGGGGSHLSEFSELKPIWSLFQDEDYGYVKLTAFNHSSLLLEYQKSSDGKVYDSFTISRDY 604          
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Match: A0A1P8BA48_ARATH (Purple acid phosphatase n=8 Tax=Camelineae TaxID=980083 RepID=A0A1P8BA48_ARATH)

HSP 1 Score: 63.2 bits (152), Expect = 3.240e-9
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 1
Query:   10 IEQLLMDYKVDFSFYGHVHNAQLFCPMFNNSQCLPDTPS----TFTAPRHAVIGNAGQELSPFPKLDNR-TLFSYEGYGWNEIIA-NATQLTLRFFADSNSSLLYEETVHKVY 330
            +++L   YKVD +FYGHVHN +  CP++ N QC+ +  S     F    H V+G AG  LS F  L  + ++F    YG+ ++ A + + L   +   SN ++    T+ + Y
Sbjct:  410 LQKLWQKYKVDIAFYGHVHNYERTCPIYQN-QCMDNEKSHYSGAFKGTIHVVVGGAGSHLSSFSSLKPKWSIFRDYDYGFVKLTAFDHSSLLFEYKKSSNGAVHDSFTIFREY 521          
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Match: UPI001929AFA2 (probable inactive purple acid phosphatase 1 n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929AFA2)

HSP 1 Score: 63.2 bits (152), Expect = 3.290e-9
Identity = 38/118 (32.20%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   10 IEQLLMDYKVDFSFYGHVHNAQLFCPMFNNSQCLPDTPSTFTAP----RHAVIGNAGQELSPFPKLDNRTLFSYE---GYGWNEIIANATQLTLRFFADSNSSLLYEETVHKVYPRPY 342
            +++L   YKVD +FYGHVHN +  CP++ N+ C+ +  + +T P     H V+G  G  L+ F KL  RT +SY     YG+ ++        L  +  S+   +Y+   H +  R Y
Sbjct:  481 LQELWQKYKVDIAFYGHVHNYERTCPVYQNT-CMRNASNLYTGPFAATTHVVVGGGGASLAEFTKL--RTHWSYFQDFDYGFGKLTTFNHSTLLFEYKKSSDGKVYD---HFIITRDY 592          
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Match: PPA27_ARATH (Probable inactive purple acid phosphatase 27 n=16 Tax=Brassicaceae TaxID=3700 RepID=PPA27_ARATH)

HSP 1 Score: 63.2 bits (152), Expect = 3.290e-9
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 1
Query:   10 IEQLLMDYKVDFSFYGHVHNAQLFCPMFNNSQCLPDTPS----TFTAPRHAVIGNAGQELSPFPKLDNR-TLFSYEGYGWNEIIA-NATQLTLRFFADSNSSLLYEETVHKVY 330
            +++L   YKVD +FYGHVHN +  CP++ N QC+ +  S     F    H V+G AG  LS F  L  + ++F    YG+ ++ A + + L   +   SN ++    T+ + Y
Sbjct:  482 LQKLWQKYKVDIAFYGHVHNYERTCPIYQN-QCMDNEKSHYSGAFKGTIHVVVGGAGSHLSSFSSLKPKWSIFRDYDYGFVKLTAFDHSSLLFEYKKSSNGAVHDSFTIFREY 593          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76790.18093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DCT2_CAFRO9.550e-2345.22Purple acid phosphatase n=1 Tax=Cafeteria roenberg... [more]
R1BJS4_EMIHU1.440e-1843.33Purple acid phosphatase n=1 Tax=Emiliania huxleyi ... [more]
A0A6P5T3X8_PRUAV7.910e-1136.28Purple acid phosphatase n=5 Tax=Prunus TaxID=3754 ... [more]
M5WZ64_PRUPE8.290e-1136.28Purple acid phosphatase n=1 Tax=Prunus persica Tax... [more]
A0A4Y1RHC0_PRUDU2.510e-1035.40Purple acid phosphatase n=1 Tax=Prunus dulcis TaxI... [more]
UPI000CED1AA21.740e-933.63probable inactive purple acid phosphatase 27 isofo... [more]
UPI0018F7FB361.770e-935.40probable inactive purple acid phosphatase 27 n=1 T... [more]
A0A1P8BA48_ARATH3.240e-932.74Purple acid phosphatase n=8 Tax=Camelineae TaxID=9... [more]
UPI001929AFA23.290e-932.20probable inactive purple acid phosphatase 1 n=2 Ta... [more]
PPA27_ARATH3.290e-932.74Probable inactive purple acid phosphatase 27 n=16 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76790contigM-pyrifera_M_contig76790:47..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue7e-13
Seed eggNOG ortholog2903.EOD10108
KEGG koko:K22390
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acid phosphatase activity
EggNOG OGsCOG1409@1,KOG1378@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size351
Cds size327
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.2355342-UTR-M-pyrifera_M_contig76790:46..701622816667.2355342-UTR-M-pyrifera_M_contig76790:46..70Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76790 47..70 +
1692278107.9319983-UTR-M-pyrifera_M_contig76790:46..701692278107.9319983-UTR-M-pyrifera_M_contig76790:46..70Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76790 47..70 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.2505643-CDS-M-pyrifera_M_contig76790:70..3971622816667.2505643-CDS-M-pyrifera_M_contig76790:70..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76790 71..397 +
1692278107.942304-CDS-M-pyrifera_M_contig76790:70..3971692278107.942304-CDS-M-pyrifera_M_contig76790:70..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76790 71..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76790.18093.1prot_M-pyrifera_M_contig76790.18093.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76790 71..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76790.18093.1

>prot_M-pyrifera_M_contig76790.18093.1 ID=prot_M-pyrifera_M_contig76790.18093.1|Name=mRNA_M-pyrifera_M_contig76790.18093.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MDYKVDFSFYGHVHNAQLFCPMFNNSQCLPDTPSTFTAPRHAVIGNAGQE
LSPFPKLDNRTLFSYEGYGWNEIIANATQLTLRFFADSNSSLLYEETVHK
VYPRPYLT*
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mRNA from alignment at M-pyrifera_M_contig76790:47..397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76790.18093.1 ID=mRNA_M-pyrifera_M_contig76790.18093.1|Name=mRNA_M-pyrifera_M_contig76790.18093.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig76790:47..397+ (Macrocystis pyrifera P11B4 male)
TTGGGTTTGATTGAACAACTTTTGATGGATTACAAAGTCGACTTCTCCTT CTATGGACATGTCCACAATGCTCAATTGTTCTGCCCAATGTTCAACAATT CGCAATGCCTTCCAGACACTCCAAGTACTTTTACTGCACCACGCCATGCA GTGATTGGAAACGCAGGACAAGAATTGTCTCCATTCCCAAAGCTCGACAA TCGAACACTCTTTTCTTATGAAGGGTATGGATGGAACGAAATCATTGCAA ACGCAACCCAACTCACGCTTCGATTCTTTGCAGATTCAAACTCATCCCTA CTCTATGAAGAAACAGTGCACAAAGTCTACCCAAGGCCGTACTTGACATG A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76790:47..397+

>mRNA_M-pyrifera_M_contig76790.18093.1 ID=mRNA_M-pyrifera_M_contig76790.18093.1|Name=mRNA_M-pyrifera_M_contig76790.18093.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig76790:47..397+ (Macrocystis pyrifera P11B4 male)
ATGGATTACAAAGTCGACTTCTCCTTCTATGGACATGTCCACAATGCTCA
ATTGTTCTGCCCAATGTTCAACAATTCGCAATGCCTTCCAGACACTCCAA
GTACTTTTACTGCACCACGCCATGCAGTGATTGGAAACGCAGGACAAGAA
TTGTCTCCATTCCCAAAGCTCGACAATCGAACACTCTTTTCTTATGAAGG
GTATGGATGGAACGAAATCATTGCAAACGCAACCCAACTCACGCTTCGAT
TCTTTGCAGATTCAAACTCATCCCTACTCTATGAAGAAACAGTGCACAAA
GTCTACCCAAGGCCGTACTTGACATGAATGGATTACAAAGTCGACTTCTC
CTTCTATGGACATGTCCACAATGCTCAATTGTTCTGCCCAATGTTCAACA
ATTCGCAATGCCTTCCAGACACTCCAAGTACTTTTACTGCACCACGCCAT
GCAGTGATTGGAAACGCAGGACAAGAATTGTCTCCATTCCCAAAGCTCGA
CAATCGAACACTCTTTTCTTATGAAGGGTATGGATGGAACGAAATCATTG
CAAACGCAACCCAACTCACGCTTCGATTCTTTGCAGATTCAAACTCATCC
CTACTCTATGAAGAAACAGTGCACAAAGTCTACCCAAGGCCGTACTTGAC
ATGA
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