mRNA_M-pyrifera_M_contig76786.18092.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76786.18092.1
Unique NamemRNA_M-pyrifera_M_contig76786.18092.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Match: A0A7L2XE65_9PASS (TGRM1 protein (Fragment) n=6 Tax=Passeriformes TaxID=9126 RepID=A0A7L2XE65_9PASS)

HSP 1 Score: 68.6 bits (166), Expect = 5.800e-12
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    4 PTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTGALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADT 297
            P  A A+AL  +   DW  + + L  +R L+ +HA  LTA+ LHE      Q   +LRS VSRAA+VCL DL+ +L + +D E   AV VLL KA ++
Sbjct:    1 PDTALAEALALLADQDWEKKIEGLNFVRCLSAYHAPVLTAK-LHETTLAVAQEVKNLRSGVSRAAVVCLGDLFTHLKKSMDQELDNAVKVLLHKAGES 97
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BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Match: UPI00052885F4 (protein FAM179B n=1 Tax=Pterocles gutturalis TaxID=240206 RepID=UPI00052885F4)

HSP 1 Score: 69.3 bits (168), Expect = 1.330e-11
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    4 PTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTGALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADT 297
            P  A  +AL  +  GDW  + + L  +RRL+ +HA+ LTA+ LHE      +   +LRS VSRAA+VCL DL+  L + +D E    V VLL+KA ++
Sbjct:  784 PEAALTEALTLLAGGDWEKKIQGLNFVRRLSANHATVLTAK-LHETSLAVAEEVKNLRSGVSRAAVVCLGDLFTYLKKSMDEELDNTVKVLLQKACES 880
[Close]
BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Match: UPI0004F0E00B (protein FAM179B-like n=1 Tax=Acanthisitta chloris TaxID=57068 RepID=UPI0004F0E00B)

HSP 1 Score: 68.6 bits (166), Expect = 2.320e-11
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    4 PTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTGALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADT 297
            P  A A+AL  +   DW  + + L ++R L+ +HA  LTA+ LHE      Q   +LRS VSRAA+VCL DL+ +L + +D E   AV VLL KA ++
Sbjct:   58 PDAALAEALLLLADEDWEKKIEGLNSVRCLSAYHAPVLTAK-LHETSLAVAQEVKNLRSGVSRAAVVCLGDLFTHLKKSMDQELDNAVKVLLHKAGES 154
[Close]
BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Match: A0A8K1G3Q8_9PASS (Uncharacterized protein (Fragment) n=1 Tax=Zosterops borbonicus TaxID=364589 RepID=A0A8K1G3Q8_9PASS)

HSP 1 Score: 68.6 bits (166), Expect = 2.380e-11
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    4 PTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTGALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADT 297
            P  A A+AL  +   DW  + + L  +R L+ +HA  LTA+ LHE      Q   +LRS VSRAA+VCL DL+ +L + +D E   AV VLL KA ++
Sbjct:   33 PESALAEALALLADHDWEKKIEGLNFVRCLSAYHAPVLTAK-LHETTLAVAQEVKNLRSGVSRAAVVCLGDLFTHLKKSMDQELDNAVKVLLHKAGES 129
[Close]
BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Match: A0A091MQ75_9PASS (Protein FAM179B (Fragment) n=1 Tax=Acanthisitta chloris TaxID=57068 RepID=A0A091MQ75_9PASS)

HSP 1 Score: 68.6 bits (166), Expect = 2.440e-11
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    4 PTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTGALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADT 297
            P  A A+AL  +   DW  + + L ++R L+ +HA  LTA+ LHE      Q   +LRS VSRAA+VCL DL+ +L + +D E   AV VLL KA ++
Sbjct:  359 PDAALAEALLLLADEDWEKKIEGLNSVRCLSAYHAPVLTAK-LHETSLAVAQEVKNLRSGVSRAAVVCLGDLFTHLKKSMDQELDNAVKVLLHKAGES 455
[Close]
BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Match: UPI0008163501 (protein FAM179B n=1 Tax=Corvus brachyrhynchos TaxID=85066 RepID=UPI0008163501)

HSP 1 Score: 68.6 bits (166), Expect = 2.480e-11
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    4 PTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTGALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADT 297
            P  A A+AL  +   DW  + + L  +R L+ +HA  LTA+ LHE      Q   +LRS VSRAA+VCL DL+ +L + +D E   AV VLL KA ++
Sbjct:  578 PDTALAEALALLNDQDWEKKIEGLNFVRCLSAYHAPILTAK-LHETTLAVAQEVKNLRSGVSRAAVVCLGDLFTHLKKSMDQELDNAVKVLLHKAGES 674
[Close]
BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Match: A0A091EZF0_CORBR (Protein FAM179B (Fragment) n=1 Tax=Corvus brachyrhynchos TaxID=85066 RepID=A0A091EZF0_CORBR)

HSP 1 Score: 68.6 bits (166), Expect = 2.480e-11
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    4 PTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTGALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADT 297
            P  A A+AL  +   DW  + + L  +R L+ +HA  LTA+ LHE      Q   +LRS VSRAA+VCL DL+ +L + +D E   AV VLL KA ++
Sbjct:  633 PDTALAEALALLNDQDWEKKIEGLNFVRCLSAYHAPILTAK-LHETTLAVAQEVKNLRSGVSRAAVVCLGDLFTHLKKSMDQELDNAVKVLLHKAGES 729
[Close]
BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Match: UPI0007AD81F5 (protein FAM179B n=1 Tax=Ficedula albicollis TaxID=59894 RepID=UPI0007AD81F5)

HSP 1 Score: 68.6 bits (166), Expect = 2.510e-11
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    4 PTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTGALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADT 297
            P  A A+AL  +   DW  + + L  +R L+ +HA  LTA+ LHE      Q   +LRS VSRAA+VCL DL+ +L + +D E   AV VLL KA ++
Sbjct:  712 PEAALAEALALLADHDWEKKIEGLNFVRCLSAYHAPVLTAK-LHETTLAVAQEVKNLRSGVSRAAVVCLGDLFTHLKKSMDQELDNAVKVLLHKAGES 808
[Close]
BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Match: A0A8C3EPA5_9CORV (TOG array regulator of axonemal microtubules 1 n=1 Tax=Corvus moneduloides TaxID=1196302 RepID=A0A8C3EPA5_9CORV)

HSP 1 Score: 68.6 bits (166), Expect = 2.520e-11
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    4 PTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTGALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADT 297
            P  A A+AL  +   DW  + + L  +R L+ +HA  LTA+ LHE      Q   +LRS VSRAA+VCL DL+ +L + +D E   AV VLL KA ++
Sbjct:  941 PDTALAEALALLNDQDWEKKIEGLNFVRCLSAYHAPILTAK-LHETTLAVAQEVKNLRSGVSRAAVVCLGDLFTHLKKSMDQELDNAVKVLLHKAGES 1037
[Close]
BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Match: A0A8C3EM97_9CORV (TOG array regulator of axonemal microtubules 1 n=10 Tax=Corvus TaxID=30420 RepID=A0A8C3EM97_9CORV)

HSP 1 Score: 68.6 bits (166), Expect = 2.520e-11
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    4 PTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTGALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADT 297
            P  A A+AL  +   DW  + + L  +R L+ +HA  LTA+ LHE      Q   +LRS VSRAA+VCL DL+ +L + +D E   AV VLL KA ++
Sbjct:  984 PDTALAEALALLNDQDWEKKIEGLNFVRCLSAYHAPILTAK-LHETTLAVAQEVKNLRSGVSRAAVVCLGDLFTHLKKSMDQELDNAVKVLLHKAGES 1080
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76786.18092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7L2XE65_9PASS5.800e-1242.86TGRM1 protein (Fragment) n=6 Tax=Passeriformes Tax... [more]
UPI00052885F41.330e-1141.84protein FAM179B n=1 Tax=Pterocles gutturalis TaxID... [more]
UPI0004F0E00B2.320e-1142.86protein FAM179B-like n=1 Tax=Acanthisitta chloris ... [more]
A0A8K1G3Q8_9PASS2.380e-1142.86Uncharacterized protein (Fragment) n=1 Tax=Zostero... [more]
A0A091MQ75_9PASS2.440e-1142.86Protein FAM179B (Fragment) n=1 Tax=Acanthisitta ch... [more]
UPI00081635012.480e-1142.86protein FAM179B n=1 Tax=Corvus brachyrhynchos TaxI... [more]
A0A091EZF0_CORBR2.480e-1142.86Protein FAM179B (Fragment) n=1 Tax=Corvus brachyrh... [more]
UPI0007AD81F52.510e-1142.86protein FAM179B n=1 Tax=Ficedula albicollis TaxID=... [more]
A0A8C3EPA5_9CORV2.520e-1142.86TOG array regulator of axonemal microtubules 1 n=1... [more]
A0A8C3EM97_9CORV2.520e-1142.86TOG array regulator of axonemal microtubules 1 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76786contigM-pyrifera_M_contig76786:2..304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog4787.PITG_00253T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.non-motile cilium assembly
EggNOG OGs3Q7NP@4776,KOG2933@1,KOG2933@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.1999118-CDS-M-pyrifera_M_contig76786:1..3041622816667.1999118-CDS-M-pyrifera_M_contig76786:1..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76786 2..304 -
1692278107.9218647-CDS-M-pyrifera_M_contig76786:1..3041692278107.9218647-CDS-M-pyrifera_M_contig76786:1..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76786 2..304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76786.18092.1prot_M-pyrifera_M_contig76786.18092.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76786 2..304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76786.18092.1

>prot_M-pyrifera_M_contig76786.18092.1 ID=prot_M-pyrifera_M_contig76786.18092.1|Name=mRNA_M-pyrifera_M_contig76786.18092.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
SPTRAAADALKAVKSGDWRSQTKSLETLRRLAMHHASALTAENLHEAVTG
ALQAAGSLRSSVSRAALVCLRDLWVNLGRRLDSEATRAVLVLLRKAADTA
A
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mRNA from alignment at M-pyrifera_M_contig76786:2..304-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76786.18092.1 ID=mRNA_M-pyrifera_M_contig76786.18092.1|Name=mRNA_M-pyrifera_M_contig76786.18092.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig76786:2..304- (Macrocystis pyrifera P11B4 male)
AGTCCTACACGTGCAGCAGCTGATGCATTGAAAGCAGTCAAATCAGGTGA
TTGGCGGTCTCAAACCAAATCTCTGGAAACGTTACGACGATTAGCAATGC
ATCATGCAAGTGCACTCACAGCAGAAAATCTACATGAAGCTGTTACTGGT
GCTTTGCAAGCTGCAGGAAGTTTACGTAGCAGTGTTTCTCGTGCCGCACT
TGTTTGTTTGCGTGATTTATGGGTTAATCTTGGACGTCGTTTGGATTCGG
AAGCAACTCGCGCAGTTCTTGTATTGTTGCGAAAAGCAGCTGATACTGCT
GCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76786:2..304-

>mRNA_M-pyrifera_M_contig76786.18092.1 ID=mRNA_M-pyrifera_M_contig76786.18092.1|Name=mRNA_M-pyrifera_M_contig76786.18092.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig76786:2..304- (Macrocystis pyrifera P11B4 male)
AGTCCTACACGTGCAGCAGCTGATGCATTGAAAGCAGTCAAATCAGGTGA
TTGGCGGTCTCAAACCAAATCTCTGGAAACGTTACGACGATTAGCAATGC
ATCATGCAAGTGCACTCACAGCAGAAAATCTACATGAAGCTGTTACTGGT
GCTTTGCAAGCTGCAGGAAGTTTACGTAGCAGTGTTTCTCGTGCCGCACT
TGTTTGTTTGCGTGATTTATGGGTTAATCTTGGACGTCGTTTGGATTCGG
AAGCAACTCGCGCAGTTCTTGTATTGTTGCGAAAAGCAGCTGATACTGCT
GCGAGTCCTACACGTGCAGCAGCTGATGCATTGAAAGCAGTCAAATCAGG
TGATTGGCGGTCTCAAACCAAATCTCTGGAAACGTTACGACGATTAGCAA
TGCATCATGCAAGTGCACTCACAGCAGAAAATCTACATGAAGCTGTTACT
GGTGCTTTGCAAGCTGCAGGAAGTTTACGTAGCAGTGTTTCTCGTGCCGC
ACTTGTTTGTTTGCGTGATTTATGGGTTAATCTTGGACGTCGTTTGGATT
CGGAAGCAACTCGCGCAGTTCTTGTATTGTTGCGAAAAGCAGCTGATACT
GCTGCG
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