mRNA_M-pyrifera_M_contig76737.18085.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76737.18085.1
Unique NamemRNA_M-pyrifera_M_contig76737.18085.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Match: R4Z1N9_9ACTN (Uncharacterized protein n=1 Tax=Candidatus Microthrix parvicella RN1 TaxID=1229780 RepID=R4Z1N9_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 2.010e-11
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    1 ADPNDYIKPEDRARIRIDDMLTRAGWAVQDSKAVNLYAGT 120
            A+ +DYI PE++AR RID+ML RAGW VQD K+VNLYAG+
Sbjct:    4 AELDDYIAPENKARARIDEMLQRAGWVVQDYKSVNLYAGS 43          
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Match: A0A838E5J9_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Euzebyales bacterium TaxID=2740540 RepID=A0A838E5J9_9ACTN)

HSP 1 Score: 59.7 bits (143), Expect = 5.190e-11
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    1 ADPNDYIKPEDRARIRIDDMLTRAGWAVQDSKAVNLYAGT 120
            +D +D + PE RAR+RID MLT AGW VQD K+VNLYAGT
Sbjct:    3 SDGHDRLLPEQRARVRIDAMLTAAGWVVQDYKSVNLYAGT 42          
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Match: UPI00037183C4 (DEAD/DEAH box helicase family protein n=1 Tax=Candidatus Microthrix parvicella TaxID=41950 RepID=UPI00037183C4)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-9
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    1 ADPNDYIKPEDRARIRIDDMLTRAGWAVQDSKAVNLYAG 117
            A+ +DYI PE++AR RID+ML RAGW VQD K+VNLYAG
Sbjct:    4 AELDDYIAPENKARARIDEMLQRAGWVVQDYKSVNLYAG 42          
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Match: A0A7W0G958_9ACTN (DEAD/DEAH box helicase family protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0G958_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 7.870e-8
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1
Query:   16 YIKPEDRARIRIDDMLTRAGWAVQDSKAVNLYA 114
            Y+ PE RAR+RIDDMLT AGWAVQD+KAV+L A
Sbjct:    8 YLTPEARARVRIDDMLTAAGWAVQDAKAVSLGA 40          
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Match: UPI001C634F20 (DEAD/DEAH box helicase family protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C634F20)

HSP 1 Score: 50.8 bits (120), Expect = 3.470e-6
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1
Query:   19 IKPEDRARIRIDDMLTRAGWAVQDSKAVNLYA 114
            + PE RAR+RID+ML  AGW VQD +AVNLYA
Sbjct:    9 LLPEQRARVRIDEMLEAAGWVVQDYRAVNLYA 40          
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Match: A0A839J332_9ACTN (DEAD/DEAH box helicase family protein n=2 Tax=unclassified Propioniciclava TaxID=2642922 RepID=A0A839J332_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 6.500e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    7 PNDYIKPEDRARIRIDDMLTRAGWAVQDSKAVNLYAGT 120
            P++ +  E+RAR  ID  LT AGWAVQD++A+NL+AGT
Sbjct:    3 PDERLAAEERARALIDRELTAAGWAVQDARALNLFAGT 40          
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Match: S4ZH48_MYCIT (Type III restriction enzyme, res subunit n=2 Tax=Mycobacterium intracellulare TaxID=1767 RepID=S4ZH48_MYCIT)

HSP 1 Score: 49.3 bits (116), Expect = 1.220e-5
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 1
Query:    1 ADPNDYIKPEDRARIRIDDMLTRAGWAVQDSKAVNLYAG 117
             D  D +  E RAR+ ID  LTRAGW VQD K +NL+AG
Sbjct:    4 GDDVDVLPAETRARVHIDQQLTRAGWQVQDKKDLNLFAG 42          
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Match: A0A2J6J379_9DELT (Type III restriction endonuclease subunit R n=3 Tax=Desulfuromonadales TaxID=69541 RepID=A0A2J6J379_9DELT)

HSP 1 Score: 47.4 bits (111), Expect = 5.830e-5
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 1
Query:   25 PEDRARIRIDDMLTRAGWAVQDSKAVNLYA 114
            PE  ARI+ID++LT AGW VQD+K+ N+YA
Sbjct:    5 PETEARIKIDELLTAAGWVVQDAKSANIYA 34          
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Match: A0A1D8SUL4_STROV (DEAD/DEAH box helicase n=5 Tax=Streptomyces TaxID=1883 RepID=A0A1D8SUL4_STROV)

HSP 1 Score: 47.0 bits (110), Expect = 7.990e-5
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 1
Query:    4 DPNDYIKPEDRARIRIDDMLTRAGWAVQDSKAVNLYAG 117
            D    +  E RAR+ ID  LT AGWAVQD KA+NL+AG
Sbjct:    5 DHESRLPAEARARLLIDQQLTAAGWAVQDRKAMNLFAG 42          
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Match: X7Y8B2_MYCKA (DEAD/DEAH box helicase family protein n=21 Tax=Mycobacterium TaxID=1763 RepID=X7Y8B2_MYCKA)

HSP 1 Score: 47.0 bits (110), Expect = 7.990e-5
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1
Query:   19 IKPEDRARIRIDDMLTRAGWAVQDSKAVNLYAG 117
            +  E RAR+RID  LT+AGW VQD K +NL+AG
Sbjct:   10 LPAETRARVRIDQQLTQAGWKVQDKKDLNLFAG 42          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76737.18085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
R4Z1N9_9ACTN2.010e-1167.50Uncharacterized protein n=1 Tax=Candidatus Microth... [more]
A0A838E5J9_9ACTN5.190e-1167.50Uncharacterized protein (Fragment) n=1 Tax=Euzebya... [more]
UPI00037183C41.010e-969.23DEAD/DEAH box helicase family protein n=1 Tax=Cand... [more]
A0A7W0G958_9ACTN7.870e-875.76DEAD/DEAH box helicase family protein (Fragment) n... [more]
UPI001C634F203.470e-668.75DEAD/DEAH box helicase family protein n=1 Tax=Iami... [more]
A0A839J332_9ACTN6.500e-657.89DEAD/DEAH box helicase family protein n=2 Tax=uncl... [more]
S4ZH48_MYCIT1.220e-556.41Type III restriction enzyme, res subunit n=2 Tax=M... [more]
A0A2J6J379_9DELT5.830e-563.33Type III restriction endonuclease subunit R n=3 Ta... [more]
A0A1D8SUL4_STROV7.990e-557.89DEAD/DEAH box helicase n=5 Tax=Streptomyces TaxID=... [more]
X7Y8B2_MYCKA7.990e-560.61DEAD/DEAH box helicase family protein n=21 Tax=Myc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76737contigM-pyrifera_M_contig76737:2..121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816666.8664315-CDS-M-pyrifera_M_contig76737:1..1211622816666.8664315-CDS-M-pyrifera_M_contig76737:1..121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76737 2..121 -
1692278107.7456357-CDS-M-pyrifera_M_contig76737:1..1211692278107.7456357-CDS-M-pyrifera_M_contig76737:1..121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76737 2..121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76737.18085.1prot_M-pyrifera_M_contig76737.18085.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76737 2..121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76737.18085.1

>prot_M-pyrifera_M_contig76737.18085.1 ID=prot_M-pyrifera_M_contig76737.18085.1|Name=mRNA_M-pyrifera_M_contig76737.18085.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
ADPNDYIKPEDRARIRIDDMLTRAGWAVQDSKAVNLYAGT
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mRNA from alignment at M-pyrifera_M_contig76737:2..121-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76737.18085.1 ID=mRNA_M-pyrifera_M_contig76737.18085.1|Name=mRNA_M-pyrifera_M_contig76737.18085.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig76737:2..121- (Macrocystis pyrifera P11B4 male)
GCGGACCCGAACGACTACATCAAGCCTGAGGATCGGGCTCGTATCCGGAT CGACGACATGCTGACCCGTGCCGGTTGGGCCGTCCAGGATTCCAAGGCAG TGAACCTGTATGCCGGGACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76737:2..121-

>mRNA_M-pyrifera_M_contig76737.18085.1 ID=mRNA_M-pyrifera_M_contig76737.18085.1|Name=mRNA_M-pyrifera_M_contig76737.18085.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig76737:2..121- (Macrocystis pyrifera P11B4 male)
GCGGACCCGAACGACTACATCAAGCCTGAGGATCGGGCTCGTATCCGGAT
CGACGACATGCTGACCCGTGCCGGTTGGGCCGTCCAGGATTCCAAGGCAG
TGAACCTGTATGCCGGGACGGCGGACCCGAACGACTACATCAAGCCTGAG
GATCGGGCTCGTATCCGGATCGACGACATGCTGACCCGTGCCGGTTGGGC
CGTCCAGGATTCCAAGGCAGTGAACCTGTATGCCGGGACG
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