mRNA_M-pyrifera_M_contig7673.18084.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7673.18084.1
Unique NamemRNA_M-pyrifera_M_contig7673.18084.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Match: A0A6H5KY11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY11_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.440e-29
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 KRTFRETLEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFREYDMFKTHRCTDFGMDQEHTPGDGVVS 228
            KR FRE LEETKR A  GGG+ RL RQHSRGKLSARER++VLLD GSFREYDM KTHRCTDFGM+++  PGDGVV+
Sbjct:   29 KRVFREQLEETKRHALAGGGDARLERQHSRGKLSARERLDVLLDPGSFREYDMLKTHRCTDFGMEKDLVPGDGVVT 104          
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Match: A0A2P4XJF7_9STRA (Propionyl-CoA carboxylase beta chain, mitochondrial (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJF7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.300e-28
Identity = 47/76 (61.84%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 KRTFRETLEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFREYDMFKTHRCTDFGMDQEHTPGDGVVS 228
            K  F++ LE+ ++RA EGGG KR+A QH++GKL+ARER+E+LLD G+FREYDM K+HRC+DFGM+++  PGDGVV+
Sbjct:   18 KLAFKDELEQARKRALEGGGAKRVANQHAKGKLTARERIELLLDKGTFREYDMLKSHRCSDFGMEKQQYPGDGVVT 93          
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Match: A0A662XUK0_9STRA (CoA carboxyltransferase N-terminal domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUK0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.150e-26
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    1 KRTFRETLEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFREYDMFKTHRCTDFGMDQEHTPGDGVVS 228
            K  F++ L   +++A EGGG KR+A+QH +GKL+ARER+E+L+D G+FREYDM KTHRC+DFGM+ +  PGDGVV+
Sbjct:   18 KLAFQDELARARKQALEGGGAKRVAKQHEKGKLTARERIELLVDQGTFREYDMLKTHRCSDFGMESQQYPGDGVVT 93          
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Match: A0A840WIU5_9RHOB (Propionyl-CoA carboxylase beta chain n=1 Tax=Rubricella aquisinus TaxID=2028108 RepID=A0A840WIU5_9RHOB)

HSP 1 Score: 105 bits (263), Expect = 4.930e-25
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   16 ETLEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFREYDMFKTHRCTDFGMDQEHTPGDGVVS 228
            E LEE + +A  GGG++R+  QH++GKL+ARER+EVLLD GSF EYDMFKTHRCTDFGMD++H PGDGVV+
Sbjct:    6 EQLEERRAQARLGGGQRRIDAQHAKGKLTARERIEVLLDDGSFEEYDMFKTHRCTDFGMDEQHIPGDGVVT 76          
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Match: M4C3M6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3M6_HYAAE)

HSP 1 Score: 105 bits (263), Expect = 5.510e-25
Identity = 47/76 (61.84%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 KRTFRETLEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFREYDMFKTHRCTDFGMDQEHTPGDGVVS 228
            K  F++TLE+ ++RA EGGG  R+A+QH +GKL+ARER+E+L+D GSFREYDM K+HRC+DFGM+++  PGDGVV+
Sbjct:    3 KLAFKDTLEKARKRAMEGGGADRVAKQHEKGKLTARERIELLVDEGSFREYDMLKSHRCSDFGMERQQYPGDGVVT 78          
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Match: A0A3M2E268_9PROT (CoA carboxyltransferase N-terminal domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2E268_9PROT)

HSP 1 Score: 97.4 bits (241), Expect = 1.260e-24
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   16 ETLEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFREYDMFKTHRCTDFGMDQEHTPGDGVVS 228
            E LE+ +  A  GGGE+R+A QH++GKL+ARER+EVLLD GSF E+DMF THRCTDFGM++   PGDGVV+
Sbjct:    6 EELEQRRANARLGGGERRIAAQHAKGKLTARERIEVLLDEGSFEEFDMFVTHRCTDFGMERTKIPGDGVVT 76          
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Match: A0A1H5XS92_9RHOO (Propionyl-CoA carboxylase carboxyl transferase subunit n=49 Tax=root TaxID=1 RepID=A0A1H5XS92_9RHOO)

HSP 1 Score: 103 bits (258), Expect = 2.440e-24
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   22 LEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFREYDMFKTHRCTDFGMDQEHTPGDGVVS 228
            LEE + +A  GGG+KR+  QH++GKLSARER+E+LLD GSF E+DMFK HRCTDFGMD EHTPGDGVV+
Sbjct:    8 LEEKRGKARLGGGQKRIDAQHAKGKLSARERIELLLDDGSFEEWDMFKEHRCTDFGMDAEHTPGDGVVT 76          
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Match: A0A0K6IWZ4_9PROT (Acetyl-CoA carboxylase, carboxyltransferase component n=6 Tax=Tepidiphilus TaxID=203470 RepID=A0A0K6IWZ4_9PROT)

HSP 1 Score: 103 bits (258), Expect = 2.440e-24
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   22 LEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFREYDMFKTHRCTDFGMDQEHTPGDGVVS 228
            LEE + RA  GGG++R+A QH++GKL+ARER+EVLLD GSF E+DMFK HRCTDFGM++EH PGDGVV+
Sbjct:    8 LEEQRARARLGGGQRRIAAQHAKGKLTARERIEVLLDEGSFEEWDMFKEHRCTDFGMEKEHIPGDGVVT 76          
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Match: A0A5D6XSM9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSM9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.310e-24
Identity = 46/76 (60.53%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 KRTFRETLEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFREYDMFKTHRCTDFGMDQEHTPGDGVVS 228
            K  F++ LE+ +++A +GGG KR A+QH +GKL+ARER+E+LLD GSFREYDM K+HRC DFGMD++  PGDGV++
Sbjct:   76 KLAFKKELEDARQQALQGGGAKRQAKQHEKGKLTARERIELLLDQGSFREYDMLKSHRCADFGMDKQQIPGDGVIT 151          
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Match: A0A225WVU9_9STRA (Propionyl-CoA carboxylase beta chain, mitochondrial (Fragment) n=10 Tax=Peronosporaceae TaxID=4777 RepID=A0A225WVU9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.930e-24
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    1 KRTFRETLEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFREYDMFKTHRCTDFGMDQEHTPGDGVVS 228
            K  F+E LE  ++RA EGGG KR+  QH++GKL+ARER+E+LLD G+FREYDM K+HRC+DFGM+ +  PGDGVV+
Sbjct:   24 KLAFKEELENARKRALEGGGPKRVDNQHAKGKLTARERIELLLDNGTFREYDMLKSHRCSDFGMESQQYPGDGVVT 99          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7673.18084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY11_9PHAE1.440e-2976.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2P4XJF7_9STRA3.300e-2861.84Propionyl-CoA carboxylase beta chain, mitochondria... [more]
A0A662XUK0_9STRA4.150e-2659.21CoA carboxyltransferase N-terminal domain-containi... [more]
A0A840WIU5_9RHOB4.930e-2569.01Propionyl-CoA carboxylase beta chain n=1 Tax=Rubri... [more]
M4C3M6_HYAAE5.510e-2561.84Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A3M2E268_9PROT1.260e-2464.79CoA carboxyltransferase N-terminal domain-containi... [more]
A0A1H5XS92_9RHOO2.440e-2471.01Propionyl-CoA carboxylase carboxyl transferase sub... [more]
A0A0K6IWZ4_9PROT2.440e-2469.57Acetyl-CoA carboxylase, carboxyltransferase compon... [more]
A0A5D6XSM9_9STRA3.310e-2460.53Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A225WVU9_9STRA4.930e-2461.84Propionyl-CoA carboxylase beta chain, mitochondria... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7673contigM-pyrifera_M_contig7673:11110..11337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue4.9e-21
Seed eggNOG ortholog272952.HpaP813694
KEGG rclassRC00097,RC00367,RC00609,RC00942
KEGG koko:K01966,ko:K01969
KEGG ReactionR01859,R04138
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00036,M00373,M00741
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Carboxyl transferase domain
EggNOG OGs3QE6K@4776,COG4799@1,KOG0540@2759
EC2.1.3.15,6.4.1.3,6.4.1.4
COG Functional cat.EI
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816666.8337867-CDS-M-pyrifera_M_contig7673:11109..113371622816666.8337867-CDS-M-pyrifera_M_contig7673:11109..11337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7673 11110..11337 +
1692278107.725846-CDS-M-pyrifera_M_contig7673:11109..113371692278107.725846-CDS-M-pyrifera_M_contig7673:11109..11337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7673 11110..11337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7673.18084.1prot_M-pyrifera_M_contig7673.18084.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7673 11110..11337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7673.18084.1

>prot_M-pyrifera_M_contig7673.18084.1 ID=prot_M-pyrifera_M_contig7673.18084.1|Name=mRNA_M-pyrifera_M_contig7673.18084.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
KRTFRETLEETKRRAFEGGGEKRLARQHSRGKLSARERVEVLLDAGSFRE
YDMFKTHRCTDFGMDQEHTPGDGVVS
back to top

mRNA from alignment at M-pyrifera_M_contig7673:11110..11337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7673.18084.1 ID=mRNA_M-pyrifera_M_contig7673.18084.1|Name=mRNA_M-pyrifera_M_contig7673.18084.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig7673:11110..11337+ (Macrocystis pyrifera P11B4 male)
AAGCGCACGTTCAGAGAAACGCTGGAGGAGACAAAGAGGCGTGCTTTCGA GGGGGGAGGGGAGAAGCGCCTGGCGCGGCAACACTCGAGGGGCAAGCTCT CGGCGAGGGAGAGGGTGGAGGTCTTGCTGGATGCAGGGTCTTTTCGAGAG TACGACATGTTCAAGACCCACCGCTGCACCGACTTCGGCATGGACCAGGA GCATACCCCCGGGGACGGAGTGGTGAGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7673:11110..11337+

>mRNA_M-pyrifera_M_contig7673.18084.1 ID=mRNA_M-pyrifera_M_contig7673.18084.1|Name=mRNA_M-pyrifera_M_contig7673.18084.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig7673:11110..11337+ (Macrocystis pyrifera P11B4 male)
AAGCGCACGTTCAGAGAAACGCTGGAGGAGACAAAGAGGCGTGCTTTCGA
GGGGGGAGGGGAGAAGCGCCTGGCGCGGCAACACTCGAGGGGCAAGCTCT
CGGCGAGGGAGAGGGTGGAGGTCTTGCTGGATGCAGGGTCTTTTCGAGAG
TACGACATGTTCAAGACCCACCGCTGCACCGACTTCGGCATGGACCAGGA
GCATACCCCCGGGGACGGAGTGGTGAGTAAGCGCACGTTCAGAGAAACGC
TGGAGGAGACAAAGAGGCGTGCTTTCGAGGGGGGAGGGGAGAAGCGCCTG
GCGCGGCAACACTCGAGGGGCAAGCTCTCGGCGAGGGAGAGGGTGGAGGT
CTTGCTGGATGCAGGGTCTTTTCGAGAGTACGACATGTTCAAGACCCACC
GCTGCACCGACTTCGGCATGGACCAGGAGCATACCCCCGGGGACGGAGTG
GTGAGT
back to top