mRNA_M-pyrifera_M_contig76710.18082.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76710.18082.1
Unique NamemRNA_M-pyrifera_M_contig76710.18082.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76710.18082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76710contigM-pyrifera_M_contig76710:474..998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816666.7327163-CDS-M-pyrifera_M_contig76710:473..6321622816666.7327163-CDS-M-pyrifera_M_contig76710:473..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76710 474..632 +
1692278107.6652086-CDS-M-pyrifera_M_contig76710:473..6321692278107.6652086-CDS-M-pyrifera_M_contig76710:473..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76710 474..632 +
1622816666.743324-CDS-M-pyrifera_M_contig76710:674..9981622816666.743324-CDS-M-pyrifera_M_contig76710:674..998Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76710 675..998 +
1692278107.675428-CDS-M-pyrifera_M_contig76710:674..9981692278107.675428-CDS-M-pyrifera_M_contig76710:674..998Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76710 675..998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76710.18082.1prot_M-pyrifera_M_contig76710.18082.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76710 474..998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76710.18082.1

>prot_M-pyrifera_M_contig76710.18082.1 ID=prot_M-pyrifera_M_contig76710.18082.1|Name=mRNA_M-pyrifera_M_contig76710.18082.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MLQKHSQKLADEMFNYLLLRIDEIDRTCELSESQLNRLTIAAKGAVQHRI
DEFVHRLAFVPQQQRFVAADDGAVGVVVGDVKQGNIIPFKGDPGLLRVME
LKLWRGTIDHTLTEQQLKRYSAAQTQREALPRELRQERVLVEIDSQLLLD
PTQRETINRQV
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mRNA from alignment at M-pyrifera_M_contig76710:474..998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76710.18082.1 ID=mRNA_M-pyrifera_M_contig76710.18082.1|Name=mRNA_M-pyrifera_M_contig76710.18082.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig76710:474..998+ (Macrocystis pyrifera P11B4 male)
ATGCTCCAGAAGCACTCGCAGAAACTCGCGGATGAGATGTTCAACTACCT
CCTGCTTCGAATCGATGAGATTGACCGAACCTGCGAATTGTCAGAATCTC
AACTCAATCGACTCACGATTGCCGCTAAGGGAGCGGTGCAACATCGGATT
GATGAGTTTGTCATGCGACTTGCTGTGATGTCAGACAGAGGAGGTGCAAA
GGTTCACAGATTGGCATTTGTCCCTCAGCAGCAACGTTTCGTCGCCGCTG
ACGATGGCGCGGTTGGTGTCGTCGTTGGGGACGTCAAACAGGGAAATATC
ATTCCATTCAAAGGGGATCCCGGTCTACTCAGGGTGATGGAGCTGAAACT
CTGGCGCGGGACGATCGACCACACTTTGACCGAGCAGCAATTGAAACGTT
ATTCAGCGGCACAGACGCAGCGGGAGGCTCTGCCTCGTGAGTTGCGGCAG
GAGCGAGTGTTGGTGGAGATTGATAGCCAATTGTTGTTGGATCCTACACA
GCGAGAGACCATCAACCGACAAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76710:474..998+

>mRNA_M-pyrifera_M_contig76710.18082.1 ID=mRNA_M-pyrifera_M_contig76710.18082.1|Name=mRNA_M-pyrifera_M_contig76710.18082.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig76710:474..998+ (Macrocystis pyrifera P11B4 male)
ATGCTCCAGAAGCACTCGCAGAAACTCGCGGATGAGATGTTCAACTACCT
CCTGCTTCGAATCGATGAGATTGACCGAACCTGCGAATTGTCAGAATCTC
AACTCAATCGACTCACGATTGCCGCTAAGGGAGCGGTGCAACATCGGATT
GATGAGTTTATGCTCCAGAAGCACTCGCAGAAACTCGCGGATGAGATGTT
CAACTACCTCCTGCTTCGAATCGATGAGATTGACCGAACCTGCGAATTGT
CAGAATCTCAACTCAATCGACTCACGATTGCCGCTAAGGGAGCGGTGCAA
CATCGGATTGATGAGTTTGTTCACAGATTGGCATTTGTCCCTCAGCAGCA
ACGTTTCGTCGCCGCTGACGATGGCGCGGTTGGTGTCGTCGTTGGGGACG
TCAAACAGGGAAATATCATTCCATTCAAAGGGGATCCCGGTCTACTCAGG
GTGATGGAGCTGAAACTCTGGCGCGGGACGATCGACCACACTTTGACCGA
GCAGCAATTGAAACGTTATTCAGCGGCACAGACGCAGCGGGAGGCTCTGC
CTCGTGAGTTGCGGCAGGAGCGAGTGTTGGTGGAGATTGATAGCCAATTG
TTGTTGGATCCTACACAGCGAGAGACCATCAACCGACAAGTCGTTCACAG
ATTGGCATTTGTCCCTCAGCAGCAACGTTTCGTCGCCGCTGACGATGGCG
CGGTTGGTGTCGTCGTTGGGGACGTCAAACAGGGAAATATCATTCCATTC
AAAGGGGATCCCGGTCTACTCAGGGTGATGGAGCTGAAACTCTGGCGCGG
GACGATCGACCACACTTTGACCGAGCAGCAATTGAAACGTTATTCAGCGG
CACAGACGCAGCGGGAGGCTCTGCCTCGTGAGTTGCGGCAGGAGCGAGTG
TTGGTGGAGATTGATAGCCAATTGTTGTTGGATCCTACACAGCGAGAGAC
CATCAACCGACAAGTC
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