mRNA_M-pyrifera_M_contig76698.18077.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76698.18077.1
Unique NamemRNA_M-pyrifera_M_contig76698.18077.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76698.18077.1 vs. uniprot
Match: R1BRX9_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BRX9_EMIHU)

HSP 1 Score: 234 bits (596), Expect = 1.100e-68
Identity = 125/253 (49.41%), Postives = 169/253 (66.80%), Query Frame = 1 
Query:    1 AKENIYTNAAGTITIPASAFTSKNRSAPVSAMWSFDEGEQLLHSAGNYADPSATSFSYTLDMPH--AATMYLTANHTTWHMNTDLLLATNTTTSPLNVPVYYTVGWWNQTQSVAVQLLQGTNVLTFSRSTPAAIAIKEFFLYTTKPDIPPPPKNHSTKPIPKPSDYIEVSALTSCVKQGITDVPE-QLCQDACEAVGLKYTGAKPRTNMTDCYGLTDGEWKGNCNYNSNASATICSDPPCKIFGSTAQQICLR 750
            A  NI  +A GT+ +PA A+TS+N SA +  M SFD GEQLLH  G+ A P ++SFSY L +    A   YLTAN +TWH+N DLL++ N + S  ++PV YTVG+WN+TQ V V L +G NVLTF RS+   IAIKE  LY T+P +PPPP N++  P P    YIEV A T+C + GI D+ +   C  AC  +G K+TG + R N+T C+ L DGEW+G CN+N+N SA  C++PPC + G T +++C+R
Sbjct:  475 AAPNISRDANGTVRLPAVAYTSRNASAAIVVMPSFDAGEQLLHQRGSLASPLSSSFSYELMVAEQDAGRHYLTANISTWHINQDLLVSVNAS-SGQSLPVAYTVGYWNETQPVEVWLGRGENVLTFFRSSDREIAIKEVRLYKTRPVVPPPPANYTPAPEPPRQAYIEVPASTTCARTGIADIIDADECGRACGILGKKFTGPRSRANITGCFVLADGEWEGRCNFNTNRSA-FCAEPPCTVLGGTGREVCIR 725
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BLAST of mRNA_M-pyrifera_M_contig76698.18077.1 vs. uniprot
Match: A0A832HIX5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A832HIX5_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 5.800e-10
Identity = 56/146 (38.36%), Postives = 76/146 (52.05%), Query Frame = 1 
Query:    1 AKENIYTNAAGTITIPASAFTSKNRSAP-VSAMWSFDEGEQL-LHSAGNYADPSATSFSYTLDMPHAATMYLTANHTTWHMNTDLLLATNTTTSPLNVPVYYTVGWWNQTQSVAVQLLQGTNVLTFSRSTP-AAIAIKEFFLYTTK 429
            A + I  +A G IT+PA A    N+SA  V+ M S D G QL  H  G+       +F+YT + PHA    L+A   T   N  L L  N    PL + + YTVG W+Q++ + ++L QG N L F+R TP   I+IK   L   K
Sbjct:  488 ADKKISIDATGAITVPAIAI---NKSAKAVTVMKSHDAGFQLHCHRGGD------ANFTYTFNAPHAGKYALSARVVTVTANQTLQLQPNDAAEPLTLDLPYTVGKWDQSKPLDIELRQGENTLRFTRKTPDRGISIKSLTLTPVK 624
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BLAST of mRNA_M-pyrifera_M_contig76698.18077.1 vs. uniprot
Match: A0A3C0VJA7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3C0VJA7_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 6.410e-9
Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = 1 
Query:    1 AKENIYTNAAGTITIPASAFTSKNRSAPVSAMWSFDEGEQLLHSAGNYADPSATSFSYTLDMPHAATMYLTANHTTWHMNTDLLLATNTTTSPLNVPVYYTVGWWNQTQSVAVQLLQGTNVLTFSRSTPAAIAIKEFFL 417
            A + I T   G ITIPA+A    N+      + SF  G+Q++             F+  +D+P A T  LTA   T H +T LLL  N   +P+++P+ +T+G W QT  V V L +G N L F+  T AA A+K+  L
Sbjct:  517 ADKRIVTGPNGAITIPAAACGGGNQ-----LVKSFLGGQQMI---------CGGPFTCVVDVPKAGTYALTARVVTVHSDTRLLLTPNDAKAPVDMPIPFTLGAWQQTAPVEVTLSEGKNTLAFTNPT-AAFALKDLTL 640
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BLAST of mRNA_M-pyrifera_M_contig76698.18077.1 vs. uniprot
Match: A0A7C4MTR1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4MTR1_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 3.810e-8
Identity = 50/135 (37.04%), Postives = 66/135 (48.89%), Query Frame = 1 
Query:   31 GTITIPASAFTSKN-RSAPVSAMWSFDEGEQLLHSAGNYADPSATSFSYTLDMPHAATMYLTANHTTWHMNTDLLLATNTTTSPLNVPVYYTVGWWNQTQSVAVQLLQGTNVLTFSRSTPAA-IAIKEFFLYTTK 429
            G IT+PA A +     SA    M  F  G QL H   +  +P    F Y +++P A    L A   T   N  LLL  N +   ++V V YTVG W  T  V + L+QG NVL F+R  P+  + IK+F L   K
Sbjct:  506 GVITVPAIALSKPTGNSAQFLPMRGFSGGVQL-HCVRDLKNPQ--EFEYAIEVPRAGKYALAAQVVTVQSNQKLLLKLNNSPQAVDVAVPYTVGRWETTPPVEITLVQGVNVLHFTRPAPSGGLTIKQFTLTPVK 637
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BLAST of mRNA_M-pyrifera_M_contig76698.18077.1 vs. uniprot
Match: A0A7Y2U7F0_9BACT (Uncharacterized protein n=1 Tax=Akkermansiaceae bacterium TaxID=2562705 RepID=A0A7Y2U7F0_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.700e-7
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:  157 ATSFSYTLDMPHAATMYLTANHTTWHMNTDLLLATNTTTSPLNVPVYYTVGWWNQTQSVAVQLLQGTNVLTFSR 378
            A +F+YT++ P A T  LTA   T      L L  N      ++ + YT+G W+QT++VAV+L +G NVLTFSR
Sbjct:   23 ADTFAYTINTPAAGTYQLTARLVTPAPKQHLFLKVNKANKVTDIALPYTIGMWDQTKAVAVELKKGENVLTFSR 96
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BLAST of mRNA_M-pyrifera_M_contig76698.18077.1 vs. uniprot
Match: A0A317ZH64_9BACT (Uncharacterized protein n=1 Tax=Coraliomargarita sinensis TaxID=2174842 RepID=A0A317ZH64_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 4.770e-5
Identity = 49/144 (34.03%), Postives = 71/144 (49.31%), Query Frame = 1 
Query:    1 AKENIYTNAAGTITIPASAFTSKNRSAPVSAMW--SFDEGEQLLHSAGNYADPSATSFSYTLDMPHAATMYLTANHTTWHMNTDLLLATNTTTSPLNVPVYYTVGWWNQTQSVAVQLLQGTNVLTFSRSTPA---AIAIKEFFL 417
            A   I  N  G ITIPA+A TS+ +S+    ++  S   G QL +         AT F YT++ P A +  L     T     +L+L+ N   +   +P+ +TVG W+ T+ V + L +G NVL FS  T       +IKEF L
Sbjct:  557 ADREITVNDKGLITIPAAA-TSEPKSSKGKVIFIPSVLGGLQLHYKRTG----GATDFEYTINAPEAGSYALIGKVVTPSWKQNLVLSVNGEANVAEIPLPHTVGMWDYTEPVHINLKRGKNVLRFSHKTEGYSKGFSIKEFQL 695
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76698.18077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
R1BRX9_EMIHU1.100e-6849.41Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A832HIX5_9BACT5.800e-1038.36Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A3C0VJA7_9BACT6.410e-935.97Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C4MTR1_9BACT3.810e-837.04Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y2U7F0_9BACT1.700e-743.24Uncharacterized protein n=1 Tax=Akkermansiaceae ba... [more]
A0A317ZH64_9BACT4.770e-534.03Uncharacterized protein n=1 Tax=Coraliomargarita s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76698contigM-pyrifera_M_contig76698:1..756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size756
Cds size756
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816666.5364683-CDS-M-pyrifera_M_contig76698:0..7561622816666.5364683-CDS-M-pyrifera_M_contig76698:0..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76698 1..756 +
1692278107.5776799-CDS-M-pyrifera_M_contig76698:0..7561692278107.5776799-CDS-M-pyrifera_M_contig76698:0..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76698 1..756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76698.18077.1prot_M-pyrifera_M_contig76698.18077.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76698 1..756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76698.18077.1

>prot_M-pyrifera_M_contig76698.18077.1 ID=prot_M-pyrifera_M_contig76698.18077.1|Name=mRNA_M-pyrifera_M_contig76698.18077.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=252bp
AKENIYTNAAGTITIPASAFTSKNRSAPVSAMWSFDEGEQLLHSAGNYAD
PSATSFSYTLDMPHAATMYLTANHTTWHMNTDLLLATNTTTSPLNVPVYY
TVGWWNQTQSVAVQLLQGTNVLTFSRSTPAAIAIKEFFLYTTKPDIPPPP
KNHSTKPIPKPSDYIEVSALTSCVKQGITDVPEQLCQDACEAVGLKYTGA
KPRTNMTDCYGLTDGEWKGNCNYNSNASATICSDPPCKIFGSTAQQICLR
N*
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mRNA from alignment at M-pyrifera_M_contig76698:1..756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76698.18077.1 ID=mRNA_M-pyrifera_M_contig76698.18077.1|Name=mRNA_M-pyrifera_M_contig76698.18077.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig76698:1..756+ (Macrocystis pyrifera P11B4 male)
GCCAAGGAGAACATTTACACCAACGCTGCCGGCACCATCACCATCCCAGC
CTCGGCGTTCACCTCCAAAAACCGCTCAGCTCCAGTCTCTGCCATGTGGA
GCTTTGACGAAGGCGAACAGCTGCTGCACAGCGCTGGAAATTATGCAGAC
CCAAGCGCCACCTCCTTCTCCTACACTCTGGACATGCCTCACGCCGCAAC
CATGTATCTGACGGCCAACCACACCACGTGGCACATGAACACGGACCTGT
TGCTTGCCACCAACACCACAACATCTCCGCTCAACGTCCCAGTGTATTAT
ACAGTCGGGTGGTGGAACCAAACGCAAAGCGTGGCAGTGCAGCTGCTCCA
AGGCACCAACGTGCTCACCTTCAGTCGCTCCACGCCAGCCGCCATCGCCA
TCAAGGAATTCTTCCTCTACACCACAAAGCCCGACATCCCACCTCCACCC
AAGAACCACTCCACGAAACCCATCCCAAAACCGTCGGACTACATCGAAGT
CTCCGCCCTCACCTCCTGCGTCAAGCAGGGCATCACAGACGTGCCAGAAC
AACTCTGCCAAGACGCATGCGAAGCCGTGGGGCTCAAGTACACGGGCGCA
AAACCACGCACCAACATGACCGACTGCTACGGCCTCACCGACGGGGAGTG
GAAAGGAAACTGCAACTACAACTCCAACGCGTCAGCCACAATCTGCTCCG
ACCCACCCTGCAAAATCTTCGGATCCACAGCACAACAAATCTGCCTCAGA
AACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76698:1..756+

>mRNA_M-pyrifera_M_contig76698.18077.1 ID=mRNA_M-pyrifera_M_contig76698.18077.1|Name=mRNA_M-pyrifera_M_contig76698.18077.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1512bp|location=Sequence derived from alignment at M-pyrifera_M_contig76698:1..756+ (Macrocystis pyrifera P11B4 male)
GCCAAGGAGAACATTTACACCAACGCTGCCGGCACCATCACCATCCCAGC
CTCGGCGTTCACCTCCAAAAACCGCTCAGCTCCAGTCTCTGCCATGTGGA
GCTTTGACGAAGGCGAACAGCTGCTGCACAGCGCTGGAAATTATGCAGAC
CCAAGCGCCACCTCCTTCTCCTACACTCTGGACATGCCTCACGCCGCAAC
CATGTATCTGACGGCCAACCACACCACGTGGCACATGAACACGGACCTGT
TGCTTGCCACCAACACCACAACATCTCCGCTCAACGTCCCAGTGTATTAT
ACAGTCGGGTGGTGGAACCAAACGCAAAGCGTGGCAGTGCAGCTGCTCCA
AGGCACCAACGTGCTCACCTTCAGTCGCTCCACGCCAGCCGCCATCGCCA
TCAAGGAATTCTTCCTCTACACCACAAAGCCCGACATCCCACCTCCACCC
AAGAACCACTCCACGAAACCCATCCCAAAACCGTCGGACTACATCGAAGT
CTCCGCCCTCACCTCCTGCGTCAAGCAGGGCATCACAGACGTGCCAGAAC
AACTCTGCCAAGACGCATGCGAAGCCGTGGGGCTCAAGTACACGGGCGCA
AAACCACGCACCAACATGACCGACTGCTACGGCCTCACCGACGGGGAGTG
GAAAGGAAACTGCAACTACAACTCCAACGCGTCAGCCACAATCTGCTCCG
ACCCACCCTGCAAAATCTTCGGATCCACAGCACAACAAATCTGCCTCAGA
AACTAGGCCAAGGAGAACATTTACACCAACGCTGCCGGCACCATCACCAT
CCCAGCCTCGGCGTTCACCTCCAAAAACCGCTCAGCTCCAGTCTCTGCCA
TGTGGAGCTTTGACGAAGGCGAACAGCTGCTGCACAGCGCTGGAAATTAT
GCAGACCCAAGCGCCACCTCCTTCTCCTACACTCTGGACATGCCTCACGC
CGCAACCATGTATCTGACGGCCAACCACACCACGTGGCACATGAACACGG
ACCTGTTGCTTGCCACCAACACCACAACATCTCCGCTCAACGTCCCAGTG
TATTATACAGTCGGGTGGTGGAACCAAACGCAAAGCGTGGCAGTGCAGCT
GCTCCAAGGCACCAACGTGCTCACCTTCAGTCGCTCCACGCCAGCCGCCA
TCGCCATCAAGGAATTCTTCCTCTACACCACAAAGCCCGACATCCCACCT
CCACCCAAGAACCACTCCACGAAACCCATCCCAAAACCGTCGGACTACAT
CGAAGTCTCCGCCCTCACCTCCTGCGTCAAGCAGGGCATCACAGACGTGC
CAGAACAACTCTGCCAAGACGCATGCGAAGCCGTGGGGCTCAAGTACACG
GGCGCAAAACCACGCACCAACATGACCGACTGCTACGGCCTCACCGACGG
GGAGTGGAAAGGAAACTGCAACTACAACTCCAACGCGTCAGCCACAATCT
GCTCCGACCCACCCTGCAAAATCTTCGGATCCACAGCACAACAAATCTGC
CTCAGAAACTAG
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