mRNA_M-pyrifera_M_contig76651.18064.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76651.18064.1
Unique NamemRNA_M-pyrifera_M_contig76651.18064.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76651.18064.1 vs. uniprot
Match: A0A2D9FRN2_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FRN2_9BACT)

HSP 1 Score: 111 bits (277), Expect = 2.070e-27
Identity = 67/173 (38.73%), Postives = 102/173 (58.96%), Query Frame = 1 
Query:   10 TFYERAIDVLVFNLPLIGHSELKLLLVINRITLRENFGSIALSIEDFIKITGMSRKTVIDGMQRLKDLNLIYIDKKVKPYKYSINRHEVLKISQIESKSYKEYNRIVSDTSIVEEVNFNGSELTPIALKVFKLWNRYMSLYLDFNNELHKKCIQSTINKHS--DTLKGIENYI 522
            TFYER +DVL+  LP +  S+LKLL++I  +T++EN   + L I+    ITG+SRKTVI  ++ L DL LI I+K  + + YSI R E+  +  I  K       ++S    VE+++  G E+ P A K+F LWN+Y+  +LD  +  H K ++ ++  +S    L  IEN I
Sbjct:    8 TFYERTLDVLIRYLPNLSGSQLKLLMIIAYMTVKENIHQVPLKIDQLEIITGLSRKTVIKTLKELSDLCLIEINKDSQVHSYSIVRDEIQFLGNISKKQDDIRQSVISKQKQVEQLHLAGLEIPPEAQKIFDLWNKYIHKWLDMYDRKHVKYVEQSLKTNSIDKHLVAIENLI 180
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76651.18064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D9FRN2_9BACT2.070e-2738.73Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76651contigM-pyrifera_M_contig76651:244..765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size522
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.8553846-CDS-M-pyrifera_M_contig76651:243..7651622816665.8553846-CDS-M-pyrifera_M_contig76651:243..765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76651 244..765 +
1692278107.1725698-CDS-M-pyrifera_M_contig76651:243..7651692278107.1725698-CDS-M-pyrifera_M_contig76651:243..765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76651 244..765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76651.18064.1prot_M-pyrifera_M_contig76651.18064.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76651 244..765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76651.18064.1

>prot_M-pyrifera_M_contig76651.18064.1 ID=prot_M-pyrifera_M_contig76651.18064.1|Name=mRNA_M-pyrifera_M_contig76651.18064.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MVKTFYERAIDVLVFNLPLIGHSELKLLLVINRITLRENFGSIALSIEDF
IKITGMSRKTVIDGMQRLKDLNLIYIDKKVKPYKYSINRHEVLKISQIES
KSYKEYNRIVSDTSIVEEVNFNGSELTPIALKVFKLWNRYMSLYLDFNNE
LHKKCIQSTINKHSDTLKGIENYI
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mRNA from alignment at M-pyrifera_M_contig76651:244..765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76651.18064.1 ID=mRNA_M-pyrifera_M_contig76651.18064.1|Name=mRNA_M-pyrifera_M_contig76651.18064.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig76651:244..765+ (Macrocystis pyrifera P11B4 male)
ATGGTTAAAACATTTTATGAAAGAGCTATAGATGTACTGGTTTTTAATCT
ACCTCTTATTGGTCACTCAGAATTAAAATTACTATTAGTAATAAACCGAA
TAACTCTAAGAGAAAACTTTGGTTCTATAGCTTTAAGTATAGAAGACTTT
ATAAAAATTACTGGGATGTCCAGAAAAACAGTAATCGATGGTATGCAGAG
ACTTAAGGATTTGAATCTGATATATATAGATAAAAAAGTTAAGCCTTATA
AGTATTCGATTAACAGACATGAAGTTTTAAAAATTTCTCAAATCGAATCA
AAAAGTTATAAAGAATACAATAGAATAGTTTCTGATACTTCAATAGTGGA
AGAAGTAAACTTTAATGGTTCAGAACTTACACCAATAGCATTAAAGGTTT
TCAAGTTGTGGAATCGATATATGTCTTTATACCTGGATTTTAACAACGAG
CTACACAAAAAGTGTATTCAGAGTACTATAAATAAACATTCAGACACTTT
AAAGGGTATTGAAAATTATATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76651:244..765+

>mRNA_M-pyrifera_M_contig76651.18064.1 ID=mRNA_M-pyrifera_M_contig76651.18064.1|Name=mRNA_M-pyrifera_M_contig76651.18064.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig76651:244..765+ (Macrocystis pyrifera P11B4 male)
ATGGTTAAAACATTTTATGAAAGAGCTATAGATGTACTGGTTTTTAATCT
ACCTCTTATTGGTCACTCAGAATTAAAATTACTATTAGTAATAAACCGAA
TAACTCTAAGAGAAAACTTTGGTTCTATAGCTTTAAGTATAGAAGACTTT
ATAAAAATTACTGGGATGTCCAGAAAAACAGTAATCGATGGTATGCAGAG
ACTTAAGGATTTGAATCTGATATATATAGATAAAAAAGTTAAGCCTTATA
AGTATTCGATTAACAGACATGAAGTTTTAAAAATTTCTCAAATCGAATCA
AAAAGTTATAAAGAATACAATAGAATAGTTTCTGATACTTCAATAGTGGA
AGAAGTAAACTTTAATGGTTCAGAACTTACACCAATAGCATTAAAGGTTT
TCAAGTTGTGGAATCGATATATGTCTTTATACCTGGATTTTAACAACGAG
CTACACAAAAAGTGTATTCAGAGTACTATAAATAAACATTCAGACACTTT
AAAGGGTATTGAAAATTATATAATGGTTAAAACATTTTATGAAAGAGCTA
TAGATGTACTGGTTTTTAATCTACCTCTTATTGGTCACTCAGAATTAAAA
TTACTATTAGTAATAAACCGAATAACTCTAAGAGAAAACTTTGGTTCTAT
AGCTTTAAGTATAGAAGACTTTATAAAAATTACTGGGATGTCCAGAAAAA
CAGTAATCGATGGTATGCAGAGACTTAAGGATTTGAATCTGATATATATA
GATAAAAAAGTTAAGCCTTATAAGTATTCGATTAACAGACATGAAGTTTT
AAAAATTTCTCAAATCGAATCAAAAAGTTATAAAGAATACAATAGAATAG
TTTCTGATACTTCAATAGTGGAAGAAGTAAACTTTAATGGTTCAGAACTT
ACACCAATAGCATTAAAGGTTTTCAAGTTGTGGAATCGATATATGTCTTT
ATACCTGGATTTTAACAACGAGCTACACAAAAAGTGTATTCAGAGTACTA
TAAATAAACATTCAGACACTTTAAAGGGTATTGAAAATTATATA
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