mRNA_M-pyrifera_M_contig76646.18060.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76646.18060.1
Unique NamemRNA_M-pyrifera_M_contig76646.18060.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76646.18060.1 vs. uniprot
Match: D8LMY2_ECTSI (CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY2_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.450e-16
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   10 RRDVQGAQGALRGREWGANIAPFIALVGDRLWERQLSIISKAFTALPLERVASMLGCGVADAEQ 201
            +RD+  AQ ALR REW A +AP++AL+  R+ ERQL+II KAFT LPLE VA ML C V DAE+
Sbjct:   97 KRDMSFAQAALRDREWSAPLAPYVALIETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEK 160
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76646.18060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMY2_ECTSI2.450e-1660.94CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76646contigM-pyrifera_M_contig76646:165..368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue4.4e-13
Seed eggNOG ortholog2880.D8LMY2
Preferred nameCOPS8
KEGG koko:K08244,ko:K10655,ko:K12181
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000338,GO:0000715,GO:0001101,GO:0001654,GO:0001745,GO:0001932,GO:0001934,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007250,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008237,GO:0008285,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009753,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010387,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016787,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0030182,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031647,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0033674,GO:0034622,GO:0034641,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0036211,GO:0038061,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042461,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046530,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048592,GO:0048609,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060429,GO:0060562,GO:0060625,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090596,GO:0098542,GO:0140096,GO:1901222,GO:1901224,GO:1901360,GO:1901564,GO:1901700,GO:1902531,GO:1902533,GO:1903320
EggNOG free text desc.COP9 signalosome assembly
EggNOG OGsKOG4414@1,KOG4414@2759
Ec32 ortholog descriptionCOP9 signalosome, subunit CSN8
Ec32 orthologEc-02_004100.1
EC2.3.2.27,2.7.9.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.5663812-CDS-M-pyrifera_M_contig76646:164..3681622816665.5663812-CDS-M-pyrifera_M_contig76646:164..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76646 165..368 +
1692278106.9699242-CDS-M-pyrifera_M_contig76646:164..3681692278106.9699242-CDS-M-pyrifera_M_contig76646:164..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76646 165..368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76646.18060.1prot_M-pyrifera_M_contig76646.18060.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76646 165..368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76646.18060.1

>prot_M-pyrifera_M_contig76646.18060.1 ID=prot_M-pyrifera_M_contig76646.18060.1|Name=mRNA_M-pyrifera_M_contig76646.18060.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
HRPRRDVQGAQGALRGREWGANIAPFIALVGDRLWERQLSIISKAFTALP
LERVASMLGCGVADAEQG
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mRNA from alignment at M-pyrifera_M_contig76646:165..368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76646.18060.1 ID=mRNA_M-pyrifera_M_contig76646.18060.1|Name=mRNA_M-pyrifera_M_contig76646.18060.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig76646:165..368+ (Macrocystis pyrifera P11B4 male)
CACCGCCCTCGCAGGGACGTGCAGGGTGCGCAGGGCGCTCTGCGTGGTCG
AGAGTGGGGCGCCAACATCGCGCCGTTCATCGCCCTTGTCGGAGACCGCT
TGTGGGAGAGGCAGCTGAGCATCATCTCCAAGGCGTTCACCGCGCTGCCG
CTGGAGCGCGTGGCGAGCATGCTGGGTTGCGGCGTCGCCGACGCCGAGCA
AGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76646:165..368+

>mRNA_M-pyrifera_M_contig76646.18060.1 ID=mRNA_M-pyrifera_M_contig76646.18060.1|Name=mRNA_M-pyrifera_M_contig76646.18060.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig76646:165..368+ (Macrocystis pyrifera P11B4 male)
CACCGCCCTCGCAGGGACGTGCAGGGTGCGCAGGGCGCTCTGCGTGGTCG
AGAGTGGGGCGCCAACATCGCGCCGTTCATCGCCCTTGTCGGAGACCGCT
TGTGGGAGAGGCAGCTGAGCATCATCTCCAAGGCGTTCACCGCGCTGCCG
CTGGAGCGCGTGGCGAGCATGCTGGGTTGCGGCGTCGCCGACGCCGAGCA
AGGTCACCGCCCTCGCAGGGACGTGCAGGGTGCGCAGGGCGCTCTGCGTG
GTCGAGAGTGGGGCGCCAACATCGCGCCGTTCATCGCCCTTGTCGGAGAC
CGCTTGTGGGAGAGGCAGCTGAGCATCATCTCCAAGGCGTTCACCGCGCT
GCCGCTGGAGCGCGTGGCGAGCATGCTGGGTTGCGGCGTCGCCGACGCCG
AGCAAGGT
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