mRNA_M-pyrifera_M_contig76628.18059.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76628.18059.1
Unique NamemRNA_M-pyrifera_M_contig76628.18059.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Match: A0A6H5K2C0_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C0_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.150e-52
Identity = 87/123 (70.73%), Postives = 103/123 (83.74%), Query Frame = 1
Query:    4 DDDFIVEVRHGSTHINSYNWVVQQCVRSNMDIKVILGNGDARGLVFYVLVYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLSGIELGPPAAVCKIMGWSDSLKSHK 372
            DDDF++ VR GSTHINSYNWVVQQ +RSNMDIKVILGNGDARGLVFY+L+Y+TKS  TV  ILPLLA+AV+R+ KE    P+ ER R+IV+ SLC +LSG ELG  AAVCK+MGWSD++ SHK
Sbjct:  446 DDDFLIRVRRGSTHINSYNWVVQQAIRSNMDIKVILGNGDARGLVFYILMYTTKSNRTVKLILPLLAEAVTRIDKEDRSEPNDERMRRIVRVSLCHLLSGTELGGAAAVCKLMGWSDTILSHK 568          
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.310e-27
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   13 FIVEVRHGSTHINSYNWVVQQCVRSNMDIKVILGNGDARGLVFYVLVYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLSGIELGPPAAVCKIMGWSDSLKSH 369
            F VE +   THINS+N V+   VRSNMDIKV+L   DA+GL++Y+L Y+TK+  T+  +LPLL   V R++ +  D+P  E A ++V+S LCK LS + +G PAA  K++G SD   SH
Sbjct: 1044 FSVEHKRLHTHINSFNPVIAFAVRSNMDIKVLLKGSDAKGLLYYILNYATKTEQTLDVLLPLLIPVVERIRADSGDAPEKEMAVRLVRSCLCKQLSSLPIGGPAAASKVLGLSDEKLSH 1162          
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.470e-26
Identity = 54/121 (44.63%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    7 DDFIVEVRHGSTHINSYNWVVQQCVRSNMDIKVILGNGDARGLVFYVLVYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLSGIELGPPAAVCKIMGWSDSLKSH 369
            D F  E+R   +HINS+N V+Q  +RSNMD+K++L + DA+GL+FY+L YSTK+  T+  +LPLLA    R++++ + +P  E A ++V+S LCK LS + +G PAA  K+    D   SH
Sbjct:  960 DRFTAELRRLHSHINSFNPVIQFAIRSNMDLKILLRDSDAKGLLFYILNYSTKTEQTLDVLLPLLAPVAERIREQSDGAPEKELAVRLVRSCLCKQLSSLSIGGPAAASKVFDLPDHRISH 1080          
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 8.570e-26
Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    7 DDFIVEVRHGSTHINSYNWVVQQCVRSNMDIKVILGNGDARGLVFYVLVYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLSGIELGPPAAVCKIMGWSDSLKSH 369
            D F   +R  STHIN YN ++   +RSNMD+ V+L + DARGL++YVL YSTKS  T+  +LPLL   V R++   E  P+ E A ++V+S LCK L+ + +G PAA  K+ G  D+  SH
Sbjct:  631 DRFTATLRLLSTHINPYNPIIHFLIRSNMDLNVMLRDSDARGLLYYVLHYSTKSEQTLDVLLPLLLPVVQRIRDHNEGEPAKETAVRLVRSCLCKQLTSLNIGGPAAASKVFGLPDAKISH 751          
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.150e-25
Identity = 53/121 (43.80%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    7 DDFIVEVRHGSTHINSYNWVVQQCVRSNMDIKVILGNGDARGLVFYVLVYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLSGIELGPPAAVCKIMGWSDSLKSH 369
            D F  E+R   +HINS+N V+Q  +RSNMD+K++L + DA+GL+FY+L YSTK+   +  +LPLLA    R++++ + +P  E A ++V+S LCK LS + +G PAA  K+    D   SH
Sbjct:  880 DRFTAELRRLHSHINSFNPVIQFAIRSNMDLKILLRDSDAKGLLFYILNYSTKTEQNLDVLLPLLAPVAERIREQSDGAPEKELAVRLVRSCLCKQLSSLSIGGPAAASKVFDLPDHRISH 1000          
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Match: A0A6H5J5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5A5_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 7.420e-25
Identity = 58/121 (47.93%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    7 DDFIVEVRHGSTHINSYNWVVQQCVRSNMDIKVILGNGDARGLVFYVLVYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLSGIELGPPAAVCKIMGWSDSLKSH 369
            D F   VR  STHIN YN ++   +RSNMD KV+L + DARGL++YVL YSTKS  T+  +LPLL   V R + E E  P+ E A ++V+S LCK L+ + +  PAA  K+ G  D+  SH
Sbjct:  700 DRFTATVRRLSTHINPYNPIIHFLIRSNMDSKVMLRDSDARGLLYYVLHYSTKSEQTLDVLLPLLFLVVQRKRCEKEGEPAKETAVRLVRSCLCKQLTSLNIDGPAAASKVFGLPDAKISH 820          
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 7.610e-25
Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    7 DDFIVEVRHGSTHINSYNWVVQQCVRSNMDIKVILGNGDARGLVFYVLVYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLSGIELGPPAAVCKIMGWSDSLKSH 369
            D F  ++R   +HINS+N V+Q  +RSNMD+KV+L + DA+G++FY+L YSTK+  T+  +LPLL   V R++ E +     E A ++V+S LCK LS + +G PAA  K++   D   SH
Sbjct:  961 DRFSADIRRLHSHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDEADRVDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISH 1081          
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Match: A0A6H5KRA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.230e-22
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   94 DIKVILGNGDARGLVFYVLVYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLSGIELGPPA 324
            D  V+LGNGDARGLVFY+L+Y+TKS  TV +ILPLLA+AV+R+ KE    P+ ER R+IV++SLC+ LSG ELG  A
Sbjct:  207 DFLVVLGNGDARGLVFYILMYTTKSNRTVNSILPLLAEAVTRIDKEDRSEPNDERMRRIVRASLCRPLSGTELGGAA 283          
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.860e-22
Identity = 46/115 (40.00%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   13 FIVEVRHGSTHINSYNWVVQQCVRSNMDIKVILGNGDARGLVFYVLVYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLSGIELGPPAAVCKIMGWSDS 357
            F  + R     +NSYN ++  C RSNMDIK +L + DARG +FY+L YSTK+  T+  +L +LA  V R++ E E +P+   A ++V++  CK ++ + +G PAA  K++G++D+
Sbjct:  204 FTAKHRREHRKVNSYNLIIAFCTRSNMDIKALLRDSDARGALFYILNYSTKTETTMDALLNVLAPVVERIKDEAEGAPAAVTAAQLVRACSCKTVAHMPVGAPAAASKVLGYTDA 318          
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.540e-21
Identity = 45/115 (39.13%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   13 FIVEVRHGSTHINSYNWVVQQCVRSNMDIKVILGNGDARGLVFYVLVYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLSGIELGPPAAVCKIMGWSDS 357
            F  + R     +NSYN ++  C RSNMDIK +L + DARG +FY+L YSTK+  T+  +L +LA  V R++ E E +P+   A ++V++  CK ++ + +G PAA  K++ ++D+
Sbjct: 3076 FTAKHRREHRKVNSYNLIIAFCTRSNMDIKALLRDSDARGALFYILNYSTKTETTMDALLNVLAPVVERIKDEAEGAPAAVTAAQLVRACSCKTVAHMPVGAPAAASKVLEYTDA 3190          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76628.18059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5K2C0_9PHAE2.150e-5270.73Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KIB1_9PHAE5.310e-2747.90ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0L4_9PHAE2.470e-2644.63Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K882_9PHAE8.570e-2646.28ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K8N9_9PHAE1.150e-2543.80Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5J5A5_9PHAE7.420e-2547.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3U9_ECTSI7.610e-2543.80ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KRA0_9PHAE1.230e-2262.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT57_9PHAE6.860e-2240.00ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KTA2_9PHAE8.540e-2139.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76628contigM-pyrifera_M_contig76628:343..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.5225306-CDS-M-pyrifera_M_contig76628:342..7141622816665.5225306-CDS-M-pyrifera_M_contig76628:342..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76628 343..714 +
1692278106.9545627-CDS-M-pyrifera_M_contig76628:342..7141692278106.9545627-CDS-M-pyrifera_M_contig76628:342..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76628 343..714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76628.18059.1prot_M-pyrifera_M_contig76628.18059.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76628 343..714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76628.18059.1

>prot_M-pyrifera_M_contig76628.18059.1 ID=prot_M-pyrifera_M_contig76628.18059.1|Name=mRNA_M-pyrifera_M_contig76628.18059.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
DDDDFIVEVRHGSTHINSYNWVVQQCVRSNMDIKVILGNGDARGLVFYVL
VYSTKSTCTVGTILPLLADAVSRLQKEGEDSPSPERARKIVQSSLCKVLS
GIELGPPAAVCKIMGWSDSLKSHK
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mRNA from alignment at M-pyrifera_M_contig76628:343..714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76628.18059.1 ID=mRNA_M-pyrifera_M_contig76628.18059.1|Name=mRNA_M-pyrifera_M_contig76628.18059.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig76628:343..714+ (Macrocystis pyrifera P11B4 male)
GACGATGACGATTTTATAGTCGAAGTCAGACATGGGTCAACCCACATCAA CTCGTACAATTGGGTCGTTCAACAGTGTGTACGTTCCAATATGGACATCA AAGTAATCCTTGGTAATGGCGACGCTCGTGGTCTTGTATTTTACGTCTTG GTGTACAGCACAAAGTCGACTTGCACAGTGGGTACAATTCTTCCGCTCTT GGCCGATGCTGTGTCCAGACTGCAGAAGGAGGGCGAAGATTCTCCCTCTC CTGAGCGTGCCCGGAAGATTGTACAGTCTAGTTTGTGCAAGGTTTTATCA GGAATAGAGCTCGGCCCGCCAGCTGCTGTGTGCAAAATCATGGGTTGGTC GGACAGCTTAAAATCTCATAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76628:343..714+

>mRNA_M-pyrifera_M_contig76628.18059.1 ID=mRNA_M-pyrifera_M_contig76628.18059.1|Name=mRNA_M-pyrifera_M_contig76628.18059.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig76628:343..714+ (Macrocystis pyrifera P11B4 male)
GACGATGACGATTTTATAGTCGAAGTCAGACATGGGTCAACCCACATCAA
CTCGTACAATTGGGTCGTTCAACAGTGTGTACGTTCCAATATGGACATCA
AAGTAATCCTTGGTAATGGCGACGCTCGTGGTCTTGTATTTTACGTCTTG
GTGTACAGCACAAAGTCGACTTGCACAGTGGGTACAATTCTTCCGCTCTT
GGCCGATGCTGTGTCCAGACTGCAGAAGGAGGGCGAAGATTCTCCCTCTC
CTGAGCGTGCCCGGAAGATTGTACAGTCTAGTTTGTGCAAGGTTTTATCA
GGAATAGAGCTCGGCCCGCCAGCTGCTGTGTGCAAAATCATGGGTTGGTC
GGACAGCTTAAAATCTCATAAGGACGATGACGATTTTATAGTCGAAGTCA
GACATGGGTCAACCCACATCAACTCGTACAATTGGGTCGTTCAACAGTGT
GTACGTTCCAATATGGACATCAAAGTAATCCTTGGTAATGGCGACGCTCG
TGGTCTTGTATTTTACGTCTTGGTGTACAGCACAAAGTCGACTTGCACAG
TGGGTACAATTCTTCCGCTCTTGGCCGATGCTGTGTCCAGACTGCAGAAG
GAGGGCGAAGATTCTCCCTCTCCTGAGCGTGCCCGGAAGATTGTACAGTC
TAGTTTGTGCAAGGTTTTATCAGGAATAGAGCTCGGCCCGCCAGCTGCTG
TGTGCAAAATCATGGGTTGGTCGGACAGCTTAAAATCTCATAAG
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