mRNA_M-pyrifera_M_contig76569.18047.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76569.18047.1
Unique NamemRNA_M-pyrifera_M_contig76569.18047.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76569.18047.1 vs. uniprot
Match: A0A8J4CNP1_9CHLO (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CNP1_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 3.430e-8
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   58 RKVSKSGHDITPITEEAKKAYAERLTSHERSVCLESGTERAFTG 189
            RKVS+SG+D+TP++EE ++A AE LT  ++ V LE GTERAFTG
Sbjct:   83 RKVSRSGYDVTPLSEEERRAAAEGLTQFQKYVVLEHGTERAFTG 126
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BLAST of mRNA_M-pyrifera_M_contig76569.18047.1 vs. uniprot
Match: A0A150G2Z5_GONPE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G2Z5_GONPE)

HSP 1 Score: 56.6 bits (135), Expect = 4.020e-8
Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   46 GGSDRKVSKSGHDITPITEEAKKAYAERLTSHERSVCLESGTERAFTGK 192
            G + RK+S+SG+D+TP++E  + A A+ LTS ++ V +E+GTERAFTGK
Sbjct:   29 GDTPRKISRSGYDVTPLSEAERAAAAQGLTSFQQHVTMEAGTERAFTGK 77
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BLAST of mRNA_M-pyrifera_M_contig76569.18047.1 vs. uniprot
Match: A0A8J4B257_9CHLO (Peptide-methionine (R)-S-oxide reductase (Fragment) n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4B257_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 4.900e-8
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   58 RKVSKSGHDITPITEEAKKAYAERLTSHERSVCLESGTERAFTG 189
            RK+S+SG+D+TP++EE ++A AE LT  ++ V LE GTERAFTG
Sbjct:   87 RKISRSGYDVTPLSEEERRAAAEGLTQFQKYVVLEHGTERAFTG 130
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BLAST of mRNA_M-pyrifera_M_contig76569.18047.1 vs. uniprot
Match: D8UEY8_VOLCA (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UEY8_VOLCA)

HSP 1 Score: 56.2 bits (134), Expect = 8.610e-8
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   58 RKVSKSGHDITPITEEAKKAYAERLTSHERSVCLESGTERAFTG 189
            RKVS+SG+D+TP+++E ++A AE LT  ++ V LE GTERAFTG
Sbjct:   75 RKVSRSGYDVTPLSDEERRAAAEGLTPFQKHVTLEHGTERAFTG 118
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BLAST of mRNA_M-pyrifera_M_contig76569.18047.1 vs. uniprot
Match: A0A0D2M0N9_9CHLO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M0N9_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 1.020e-6
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   46 GGSDRKVSKSGHDITPITEEAKKAYAERLTSHERSVCLESGTERAFTGKYWD 201
            G  ++ VSKSG D+TP+T E ++  AE+L+  +R V L  GTERAFTG+  D
Sbjct:   52 GAPEKVVSKSGFDVTPLTNEQRQQEAEKLSDFQRYVTLNQGTERAFTGRTAD 103
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BLAST of mRNA_M-pyrifera_M_contig76569.18047.1 vs. uniprot
Match: A0A7C5EIZ4_9BACT (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5EIZ4_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 2.060e-5
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   58 RKVSKSGHDITPITEEAKKAYAERLTSHERSVCLESGTERAFTGKYWD 201
            ++VS SG DITP+ E   K  ++ L   E  V   +GTERAFTGKYW+
Sbjct:   28 KQVSSSGFDITPLPEPVVKELSKDLDPEELKVTCMAGTERAFTGKYWN 75
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BLAST of mRNA_M-pyrifera_M_contig76569.18047.1 vs. uniprot
Match: A0A7V9C4R3_9BACT (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7V9C4R3_9BACT)

HSP 1 Score: 47.8 bits (112), Expect = 5.770e-5
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   58 RKVSKSGHDITPITEEAKKAYAERLTSHERSVCLESGTERAFTGKYWD 201
            R++S+SG+D+TPI+ E ++  A+ LT  ER + L+ GTE AF G   D
Sbjct:    7 RELSESGYDVTPISNETQERLAQDLTGEERRILLDHGTEPAFCGNLTD 54
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BLAST of mRNA_M-pyrifera_M_contig76569.18047.1 vs. uniprot
Match: A0A0G4GHH7_VITBC (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GHH7_VITBC)

HSP 1 Score: 48.1 bits (113), Expect = 8.030e-5
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   61 KVSKSGHDITPITEEAKKAYAERLTSHERSVCLESGTERAFTGK 192
            K+SKSG+D+TP+T+E  +  A+ LTS +  + L++GTE AFTG+
Sbjct:   75 KISKSGYDVTPMTDEEVQKAAQGLTSKQYDINLKAGTEMAFTGE 118
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76569.18047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A8J4CNP1_9CHLO3.430e-861.36Peptide-methionine (R)-S-oxide reductase n=2 Tax=V... [more]
A0A150G2Z5_GONPE4.020e-853.06Peptide-methionine (R)-S-oxide reductase n=1 Tax=G... [more]
A0A8J4B257_9CHLO4.900e-859.09Peptide-methionine (R)-S-oxide reductase (Fragment... [more]
D8UEY8_VOLCA8.610e-859.09Peptide-methionine (R)-S-oxide reductase n=1 Tax=V... [more]
A0A0D2M0N9_9CHLO1.020e-650.00Peptide-methionine (R)-S-oxide reductase n=1 Tax=M... [more]
A0A7C5EIZ4_9BACT2.060e-550.00Peptide methionine sulfoxide reductase MsrB n=1 Ta... [more]
A0A7V9C4R3_9BACT5.770e-545.83Peptide methionine sulfoxide reductase MsrB n=1 Ta... [more]
A0A0G4GHH7_VITBC8.030e-550.00Peptide-methionine (R)-S-oxide reductase n=2 Tax=V... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76569contigM-pyrifera_M_contig76569:160..360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog3075.A0A087SGC0
Preferred nameMSRB1
KEGG koko:K07305
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0016491,GO:0016667,GO:0016671,GO:0033743,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055114
EggNOG free text desc.methionine sulfoxide reductase
EggNOG OGs37I4S@33090,COG0229@1,KOG0856@2759
EC1.8.4.12
COG Functional cat.O
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.8791997-CDS-M-pyrifera_M_contig76569:159..3601622816664.8791997-CDS-M-pyrifera_M_contig76569:159..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76569 160..360 -
1692278106.5984976-CDS-M-pyrifera_M_contig76569:159..3601692278106.5984976-CDS-M-pyrifera_M_contig76569:159..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76569 160..360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76569.18047.1prot_M-pyrifera_M_contig76569.18047.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76569 160..360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76569.18047.1

>prot_M-pyrifera_M_contig76569.18047.1 ID=prot_M-pyrifera_M_contig76569.18047.1|Name=mRNA_M-pyrifera_M_contig76569.18047.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
STRSVASAGVVRSMSGGSDRKVSKSGHDITPITEEAKKAYAERLTSHERS
VCLESGTERAFTGKYWD
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mRNA from alignment at M-pyrifera_M_contig76569:160..360-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76569.18047.1 ID=mRNA_M-pyrifera_M_contig76569.18047.1|Name=mRNA_M-pyrifera_M_contig76569.18047.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig76569:160..360- (Macrocystis pyrifera P11B4 male)
TCTACGAGAAGTGTTGCAAGTGCGGGAGTCGTGAGGAGCATGTCCGGAGG
CAGCGATCGCAAAGTGTCAAAAAGTGGCCACGACATTACGCCCATCACCG
AGGAGGCGAAGAAGGCCTATGCTGAACGCCTCACTTCCCACGAGCGCAGT
GTGTGTCTCGAGAGTGGAACAGAGAGGGCATTCACAGGCAAGTATTGGGA
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76569:160..360-

>mRNA_M-pyrifera_M_contig76569.18047.1 ID=mRNA_M-pyrifera_M_contig76569.18047.1|Name=mRNA_M-pyrifera_M_contig76569.18047.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig76569:160..360- (Macrocystis pyrifera P11B4 male)
TCTACGAGAAGTGTTGCAAGTGCGGGAGTCGTGAGGAGCATGTCCGGAGG
CAGCGATCGCAAAGTGTCAAAAAGTGGCCACGACATTACGCCCATCACCG
AGGAGGCGAAGAAGGCCTATGCTGAACGCCTCACTTCCCACGAGCGCAGT
GTGTGTCTCGAGAGTGGAACAGAGAGGGCATTCACAGGCAAGTATTGGGA
CTCTACGAGAAGTGTTGCAAGTGCGGGAGTCGTGAGGAGCATGTCCGGAG
GCAGCGATCGCAAAGTGTCAAAAAGTGGCCACGACATTACGCCCATCACC
GAGGAGGCGAAGAAGGCCTATGCTGAACGCCTCACTTCCCACGAGCGCAG
TGTGTGTCTCGAGAGTGGAACAGAGAGGGCATTCACAGGCAAGTATTGGG
AC
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