mRNA_M-pyrifera_M_contig76565.18045.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76565.18045.1
Unique NamemRNA_M-pyrifera_M_contig76565.18045.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Match: J9IN29_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IN29_9SPIT)

HSP 1 Score: 72.8 bits (177), Expect = 1.130e-12
Identity = 31/86 (36.05%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   40 LIAGYEPNLYFWESVVLLRKVLLSRITTTLAPSGGGMQIATSLTVLLFAVILHVRFHPYSSQLINRMEAFSLIVAGLTYVGGIYVV 297
            L+ G++ N +FWE ++L RK+L+  +T  L       Q+   L +L+ +V+LH+ ++PY + ++N+ME +SL VA +T  GG++ V
Sbjct: 2659 LLNGFQRNNFFWEILILYRKILIVMVTVLLNSVSAESQVLVVLMILVLSVLLHLNYNPYYTFVLNKMELYSLQVACITMYGGMFYV 2744          
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Match: A0A077ZTD4_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZTD4_STYLE)

HSP 1 Score: 71.2 bits (173), Expect = 3.810e-12
Identity = 30/86 (34.88%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   40 LIAGYEPNLYFWESVVLLRKVLLSRITTTLAPSGGGMQIATSLTVLLFAVILHVRFHPYSSQLINRMEAFSLIVAGLTYVGGIYVV 297
            L  GY+   ++WE V+L RK+L+  IT  L+      Q+   L V+L +++L V+F PY +  +N ME++SL+V+ +T   G++ +
Sbjct:  557 LFNGYKIKTFYWEIVILYRKILIVMITVFLSSISPETQVLVGLIVILISILLQVKFRPYYTSTLNTMESYSLLVSAVTLYSGMFYI 642          
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Match: A0A5A8CR06_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CR06_CAFRO)

HSP 1 Score: 70.5 bits (171), Expect = 7.310e-12
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   40 LIAGYEPNLYFWESVVLLRKVLLSRITTTLAPSGGGMQIATSLTVLLFAVILHVRFHPYSSQLINRMEAFSLIVAGLTYVGGI 288
            L AG+  ++YFWESVV+ RKVLLS I   L P G  +Q   +L VL  A +LHV   PY     N +E  SL+   LT   G+
Sbjct: 3257 LYAGFRSHVYFWESVVMARKVLLSVIVVFLEPYGVDVQAYVALAVLFAAALLHVATWPYEETSANSLELLSLVACFLTITLGL 3339          
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Match: A0A699YZ65_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YZ65_HAELA)

HSP 1 Score: 65.1 bits (157), Expect = 5.570e-10
Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   34 LILIAGYEPNLYFWESVVLLRKVLLSRITTTLAPSGGGMQIATSLTVLLFAVILHVRFHPYSSQLINRMEAFS--------LIVAGLTY 276
            + + A Y    +FWESVV+LRKV+++     LA +  G+Q+ATS  ++L  + LH+   PY+++L+N++E  S        L+ A LTY
Sbjct: 1122 MFMYADYRTCRFFWESVVMLRKVVIAAAMVFLAITDIGLQVATSAIIVLLFLFLHLAARPYNNELLNKLELLSQAVVLTNLLLSAYLTY 1210          
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Match: A0A812TG09_9DINO (Pmp10 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TG09_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 8.840e-10
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   31 ILILIAGYEPNLYFWESVVLLRKVLLSRITTTLAPSGG-GMQIATSLTVLLFAVILHVRFHPYSSQLINRMEAFSLIVAGLTYVGGIYVVLD 303
            +  L+AGY+PNL FWE VVL RK  +  + T L  S   G  +   L +++ A +LHV   PY+S  +NR+EA  L ++    V  I ++++
Sbjct:  232 VAFLVAGYKPNLRFWEVVVLSRKAAIFVVATVLPMSWAPGAHLVYLLGIIVVAELLHVTIQPYASPFLNRLEAQMLGISSACLVLVISLLVE 323          
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Match: A8I9P7_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8I9P7_CHLRE)

HSP 1 Score: 63.2 bits (152), Expect = 2.700e-9
Identity = 31/105 (29.52%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    1 EQHCRRDYHLILILIAGYEPNLYFWESVVLLRKVLLSRITTTLAPSGGGMQIATSLTVLLFAVILHVRFHPYSSQLINRMEAFSLIVAGLTYVGGIYVVLDDAGK 315
            EQ C R  HL L   A YE + Y+WESVV+LRK+ ++ +          + +  S+ V+  +++L V + PY +  ++ +E   L+   +T+    Y + D  G+
Sbjct: 1828 EQRCYRGIHLTLCA-AEYEDDHYYWESVVMLRKLTVTAVIVFAGTYRWQLTLLLSMGVIATSLLLQVAYRPYETDAMDELERLGLVATLMTFYLATYFMDDSVGR 1931          
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Match: A0A1R2CJM8_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CJM8_9CILI)

HSP 1 Score: 62.0 bits (149), Expect = 6.800e-9
Identity = 31/95 (32.63%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   40 LIAGYEPNLYFWESVVLLRKVLLSRITTTLAPSGGGMQIATSLTVLLFAVILHVRFHPYSSQLINRMEAFSLIVAGLTYVGGIYVV---LDDAGK 315
            L  G++ N Y+WE V++LRK+++   +  L  +  G+Q      V+LFA     R  PYS   +N ME  S++V+ +T   G++ +   +D  GK
Sbjct: 1910 LYKGFKSNRYYWEFVIMLRKIIIICSSVFLKNTSPGIQALIVFVVILFAYTFQRRLEPYSVGQLNEMELRSIMVSVVTIYAGLFFLTNHIDSYGK 2004          
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Match: A8IRB8_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IRB8_CHLRE)

HSP 1 Score: 61.6 bits (148), Expect = 8.980e-9
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   40 LIAGYEPNLYFWESVVLLRKVLLSRITTTLAPSGGGMQIATSLTVLLFAVILHVRFHPYSSQLINRMEAFSLIVAGLTYVGGIYVVLD 303
            L   Y  N Y+W+SVV+ RK+ +      LAP    +QI T+L +++ +++  + F+PY +Q +NR+E  SL          +Y + D
Sbjct:  172 LYEDYNRNCYYWDSVVMARKLFVVMAIVFLAPYSPVLQILTTLGIIIVSLVAQISFNPYKNQRMNRLERLSLYATLAMLYCALYFLSD 259          
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Match: A0A8J8TA27_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8TA27_HALGN)

HSP 1 Score: 61.6 bits (148), Expect = 9.320e-9
Identity = 31/93 (33.33%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   40 LIAGYE-PNLYFWESVVLLRKVLLSRITTTLAPSGGGMQIATSLTVLLFAVILHVRFHPYSSQLINRMEAFSLIVAGLTYVGGIYVVLDDAGK 315
            L +GY  P  YFWE V++ RK+ +  I+  L+ SG  +Q  T+L  L+  V L     P+++  +N +E  SL+ + LT   G++ + D++ K
Sbjct: 2112 LYSGYRIPEAYFWELVIMYRKICIIFISVFLSQSGKIVQALTTLIFLVLCVSLTAFKRPFTNHFLNNLEQLSLMSSALTVYCGLFFISDNSFK 2204          
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Match: A0A2K3CPA6_CHLRE (TRP domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CPA6_CHLRE)

HSP 1 Score: 61.6 bits (148), Expect = 9.390e-9
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   40 LIAGYEPNLYFWESVVLLRKVLLSRITTTLAPSGGGMQIATSLTVLLFAVILHVRFHPYSSQLINRMEAFSLIVAGLTYVGGIYVVLD 303
            L   Y  N Y+W+SVV+ RK+ +      LAP    +QI T+L +++ +++  + F+PY +Q +NR+E  SL          +Y + D
Sbjct: 3277 LYEDYNRNCYYWDSVVMARKLFVVMAIVFLAPYSPVLQILTTLGIIIVSLVAQISFNPYKNQRMNRLERLSLYATLAMLYCALYFLSD 3364          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76565.18045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
J9IN29_9SPIT1.130e-1236.05Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]
A0A077ZTD4_STYLE3.810e-1234.88Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
A0A5A8CR06_CAFRO7.310e-1244.58Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A699YZ65_HAELA5.570e-1037.08Uncharacterized protein n=1 Tax=Haematococcus lacu... [more]
A0A812TG09_9DINO8.840e-1036.96Pmp10 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A8I9P7_CHLRE2.700e-929.52Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A1R2CJM8_9CILI6.800e-932.63Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A8IRB8_CHLRE8.980e-931.82Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A0A8J8TA27_HALGN9.320e-933.33Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A2K3CPA6_CHLRE9.390e-931.82TRP domain-containing protein n=2 Tax=Chlamydomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76565contigM-pyrifera_M_contig76565:185..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog3055.EDP06977
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs2BFIX@1,2S176@2759,34KI5@3041,37ZU3@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.8029857-CDS-M-pyrifera_M_contig76565:184..5111622816664.8029857-CDS-M-pyrifera_M_contig76565:184..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76565 185..511 +
1692278106.5662825-CDS-M-pyrifera_M_contig76565:184..5111692278106.5662825-CDS-M-pyrifera_M_contig76565:184..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76565 185..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76565.18045.1prot_M-pyrifera_M_contig76565.18045.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76565 185..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76565.18045.1

>prot_M-pyrifera_M_contig76565.18045.1 ID=prot_M-pyrifera_M_contig76565.18045.1|Name=mRNA_M-pyrifera_M_contig76565.18045.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
EQHCRRDYHLILILIAGYEPNLYFWESVVLLRKVLLSRITTTLAPSGGGM
QIATSLTVLLFAVILHVRFHPYSSQLINRMEAFSLIVAGLTYVGGIYVVL
DDAGKLGS*
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mRNA from alignment at M-pyrifera_M_contig76565:185..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76565.18045.1 ID=mRNA_M-pyrifera_M_contig76565.18045.1|Name=mRNA_M-pyrifera_M_contig76565.18045.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig76565:185..511+ (Macrocystis pyrifera P11B4 male)
GAGCAACATTGCAGGAGAGACTACCACCTTATCTTGATTTTGATCGCGGG TTACGAGCCAAACCTCTACTTTTGGGAGAGCGTCGTGCTGCTTCGCAAGG TCCTCCTCTCCCGCATCACCACAACACTTGCTCCATCTGGCGGGGGCATG CAAATCGCAACATCTCTTACTGTTCTCCTCTTTGCAGTCATCCTTCACGT CCGATTCCATCCCTATTCTTCCCAGCTCATCAACCGCATGGAAGCATTCT CGCTCATAGTTGCTGGGCTTACATACGTCGGCGGCATCTACGTGGTGTTG GATGACGCGGGCAAGCTGGGATCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76565:185..511+

>mRNA_M-pyrifera_M_contig76565.18045.1 ID=mRNA_M-pyrifera_M_contig76565.18045.1|Name=mRNA_M-pyrifera_M_contig76565.18045.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig76565:185..511+ (Macrocystis pyrifera P11B4 male)
GAGCAACATTGCAGGAGAGACTACCACCTTATCTTGATTTTGATCGCGGG
TTACGAGCCAAACCTCTACTTTTGGGAGAGCGTCGTGCTGCTTCGCAAGG
TCCTCCTCTCCCGCATCACCACAACACTTGCTCCATCTGGCGGGGGCATG
CAAATCGCAACATCTCTTACTGTTCTCCTCTTTGCAGTCATCCTTCACGT
CCGATTCCATCCCTATTCTTCCCAGCTCATCAACCGCATGGAAGCATTCT
CGCTCATAGTTGCTGGGCTTACATACGTCGGCGGCATCTACGTGGTGTTG
GATGACGCGGGCAAGCTGGGATCGTAGGAGCAACATTGCAGGAGAGACTA
CCACCTTATCTTGATTTTGATCGCGGGTTACGAGCCAAACCTCTACTTTT
GGGAGAGCGTCGTGCTGCTTCGCAAGGTCCTCCTCTCCCGCATCACCACA
ACACTTGCTCCATCTGGCGGGGGCATGCAAATCGCAACATCTCTTACTGT
TCTCCTCTTTGCAGTCATCCTTCACGTCCGATTCCATCCCTATTCTTCCC
AGCTCATCAACCGCATGGAAGCATTCTCGCTCATAGTTGCTGGGCTTACA
TACGTCGGCGGCATCTACGTGGTGTTGGATGACGCGGGCAAGCTGGGATC
GTAG
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