mRNA_M-pyrifera_M_contig76533.18041.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76533.18041.1
Unique NamemRNA_M-pyrifera_M_contig76533.18041.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Match: A0A1E7FGC0_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGC0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.080e-18
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:  184 KPIPDWARGRRLEGSLHAQFGGYGGPR-IDPDHVFAEIKTCDLEEIFQVPAGKRLRARGSSGNWEPDALTSAEKDKYRKDMGF 429
            K IP WA    L  +L  Q+ G+ G R +DPD +F E+++CDLE IF     K  R+R SSGNW  D +T AEK  Y+++MGF
Sbjct:   31 KKIPTWALRANLYPALEKQYNGHIGSRKVDPDEIFPEVQSCDLEAIFGTKKAKAYRSRASSGNWAQDKVTVAEKLVYKREMGF 113
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BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Match: A0A4D9DBD2_9STRA (SAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBD2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.430e-18
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:  184 KPIPDWARGRRLEGSLHAQFGGYGGPRIDPDHVFAEIKTCDLEEIFQ------VPAGKRL-RARGSSGNWEPDALTSAEKDKYRKDMGFG 432
            K +PDWA+G  L  +L AQF      ++DPD +F E++TCDLEEIF+        A KR  R R S+GNW+ D L+SAEK +YR+DMG+G
Sbjct: 1000 KRVPDWAKGPALREALEAQFNKKH--KVDPDSIFPEVRTCDLEEIFKSYQQGGAQAKKRAYRQRQSTGNWQRDELSSAEKTRYREDMGYG 1087
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BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Match: A0A448ZSM0_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSM0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.750e-17
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:  184 KPIPDWARGRRLEGSLHAQFGG-YGGPRIDPDHVFAEIKTCDLEEIFQVPAGKRLRARGSSGNWEPDALTSAEKDKYRKDMGF 429
            K IP WA+   L  +L  Q+ G  GG +IDPD +F E+ +CDLE IF     K  R+R SSGNW  D +T+AEK  Y++ MGF
Sbjct:  424 KKIPTWAQRSNLYSALEEQYNGRIGGKKIDPDEIFPEVHSCDLEAIFGRRKSKNYRSRASSGNWANDQVTAAEKLVYKRQMGF 506
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BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Match: A0A7S4ACS3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ACS3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.030e-16
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  184 KPIPDWARGRRLEGSLHAQFGG-YGGPRIDPDHVFAEIKTCDLEEIFQVPAGKRLRARGSSGNWEPDALTSAEKDKYRKDMGFGGN 438
            K IP WA+   L  +L  Q+ G  GG ++DPD +F E+ +CDLE IF     K  R+R SSGNW  D +T AEK  Y++ MGF  +
Sbjct:  579 KKIPTWAQRSNLYSALEEQYNGRIGGKKVDPDEIFPEVHSCDLEAIFGRRKSKNYRSRASSGNWANDEVTVAEKLVYKRGMGFAND 664
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BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Match: A0A7S2M2L9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M2L9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.140e-14
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:  184 KPIPDWARGRRLEGSLHAQFGGYGGPRIDPDHVFAEIKTCDLEEIFQVPAGKRLRARGSSGNWEPDALTSAEKDKYRKDMGF 429
            K +P+WA+   L  +L  QF   G  R+DPD +F E+ TC+LEEIF      R + R SSGNW  D +T AEK  Y++ MG+
Sbjct:  228 KKVPEWAQRHNLHRALERQFAD-GPNRLDPDKIFGEVLTCNLEEIFDKKKS-RYQRRTSSGNWTKDHVTIAEKLTYKRTMGY 307
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BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Match: D8LQB1_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.720e-13
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:  190 IPDWARGRRLEGSLHAQFGGYGGPR-IDPDHVFAEIKTCDLEEIFQVPAGKRLRARGSSGNWEPDALTSAEKDKYRKDMGF 429
            IPDWARG+ L   L  Q   YGGP  ++PD +F E  TC+LE IF     K+   R SSGNW  D LT AEK  Y++ MGF
Sbjct:  553 IPDWARGKALAKILDKQ---YGGPNPLNPDKIFPEFFTCNLEHIFNTK--KQKWDRSSSGNWHTDRLTIAEKLAYQRAMGF 628
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BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.830e-13
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:  190 IPDWARGRRLEGSLHAQFGGYGGPR-IDPDHVFAEIKTCDLEEIFQVPAGKRLRARGSSGNWEPDALTSAEKDKYRKDMGF 429
            IPDWARG+ L   L  Q   YGGP  ++PD +F E  TC+LE IF     K+   R SSGNW  D LT AEK  Y++ MGF
Sbjct:  968 IPDWARGKALAKILDKQ---YGGPNPLNPDKIFPEFFTCNLEHIFNTK--KQKWDRSSSGNWHTDRLTIAEKLAYQRAMGF 1043
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BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Match: D8LJ56_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ56_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.080e-13
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:  184 KPIPDWARGRRLEGSLHAQFGGYGGPRIDPDHVFAEIKTCDLEEIFQVPAGKRLRARGSSGNWEPDALTSAEKDKYRKDMGF 429
            K IP WA+G  L  +L  Q+    G ++DPD +F E+ TCDLE IF V    R   RGSS NW PD +T  E   Y++ +G 
Sbjct:  193 KKIPAWAKGSALSEALTRQYAT--GQKVDPDKIFPEVFTCDLEAIFPVNKS-RYHRRGSSANWTPDRVTPQEVLTYKRSVGI 271
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BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Match: A0A7S1UTM9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UTM9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.920e-13
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:  190 IPDWARGRRLEGSLHAQFGGYGGPRIDPDHVFAEIKTCDLEEIFQVPAGKRLRARGSSGNWEPDALTSAEKDKYRKDMGF 429
            IP+WA+ + L  +L  Q+    G   DPD +F E++TCDLEE+F      R + R S+G W  D LTSAEK+ Y++ MG+
Sbjct:  549 IPEWAQKKNLMIALQKQYSVEAGA-FDPDTIFPEVETCDLEEVFS-KRRNRYKHRNSTGIWGKDRLTSAEKEAYKRKMGY 626
[Close]
BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Match: A0A6H5KX29_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX29_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 8.820e-13
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:  184 KPIPDWARGRRLEGSLHAQFGGYGGPRIDPDHVFAEIKTCDLEEIFQVPAGKRLRARGSSGNWEPDALTSAEKDKYRKDMGF 429
            K IP WA+G  L  +L  Q+    G ++DPD +F E+ TCDLE IF V    R   RGSS NW PD +T  E   Y++ +G 
Sbjct: 1439 KKIPAWAKGSALSEALTRQYAT--GQKVDPDKIFPEVFTCDLEAIFPVTKS-RYHRRGSSANWTPDRVTPQEVLTYKRSVGI 1517
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76533.18041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A1E7FGC0_9STRA1.080e-1846.99INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A4D9DBD2_9STRA1.430e-1850.00SAP domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A448ZSM0_9STRA2.750e-1748.19INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A7S4ACS3_9STRA1.030e-1645.35Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2M2L9_9STRA4.140e-1445.12Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
D8LQB1_ECTSI1.720e-1350.62INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A6H5L3Q6_9PHAE1.830e-1350.62SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJ56_ECTSI4.080e-1343.90INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A7S1UTM9_9STRA5.920e-1343.75Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6H5KX29_9PHAE8.820e-1343.90SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76533contigM-pyrifera_M_contig76533:247..687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog2880.D8LQB1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Inner centromere protein, ARK binding region
EggNOG OGs29Q2T@1,2RX7J@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.6643677-CDS-M-pyrifera_M_contig76533:246..6871622816664.6643677-CDS-M-pyrifera_M_contig76533:246..687Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76533 247..687 +
1692278106.514117-CDS-M-pyrifera_M_contig76533:246..6871692278106.514117-CDS-M-pyrifera_M_contig76533:246..687Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76533 247..687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76533.18041.1prot_M-pyrifera_M_contig76533.18041.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76533 247..687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76533.18041.1

>prot_M-pyrifera_M_contig76533.18041.1 ID=prot_M-pyrifera_M_contig76533.18041.1|Name=mRNA_M-pyrifera_M_contig76533.18041.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
AVQPPTVTPGPSSSSSSSSSAVRSAVAPSSSKPKRPEDNYELSEREESSD
DEEETAARRRTKPIPDWARGRRLEGSLHAQFGGYGGPRIDPDHVFAEIKT
CDLEEIFQVPAGKRLRARGSSGNWEPDALTSAEKDKYRKDMGFGGN*
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mRNA from alignment at M-pyrifera_M_contig76533:247..687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76533.18041.1 ID=mRNA_M-pyrifera_M_contig76533.18041.1|Name=mRNA_M-pyrifera_M_contig76533.18041.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig76533:247..687+ (Macrocystis pyrifera P11B4 male)
GCTGTACAACCTCCAACTGTAACTCCTGGACCATCCTCTTCCTCCTCTTC
TTCTTCATCTGCTGTTAGGTCTGCAGTTGCTCCATCTAGTAGTAAACCAA
AGCGTCCAGAAGATAATTATGAATTGTCAGAGAGAGAAGAATCAAGTGAT
GATGAAGAGGAAACTGCAGCAAGAAGAAGGACGAAGCCGATCCCAGATTG
GGCAAGAGGAAGGAGATTGGAAGGATCCCTTCACGCACAATTCGGAGGAT
ATGGTGGACCGAGAATTGACCCAGACCATGTGTTTGCAGAGATTAAAACG
TGTGACCTTGAAGAAATTTTCCAAGTTCCTGCTGGAAAGCGCCTCCGTGC
AAGAGGATCAAGCGGGAATTGGGAACCCGATGCACTTACATCTGCAGAGA
AAGACAAGTATCGAAAAGACATGGGATTTGGAGGAAATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76533:247..687+

>mRNA_M-pyrifera_M_contig76533.18041.1 ID=mRNA_M-pyrifera_M_contig76533.18041.1|Name=mRNA_M-pyrifera_M_contig76533.18041.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig76533:247..687+ (Macrocystis pyrifera P11B4 male)
GCTGTACAACCTCCAACTGTAACTCCTGGACCATCCTCTTCCTCCTCTTC
TTCTTCATCTGCTGTTAGGTCTGCAGTTGCTCCATCTAGTAGTAAACCAA
AGCGTCCAGAAGATAATTATGAATTGTCAGAGAGAGAAGAATCAAGTGAT
GATGAAGAGGAAACTGCAGCAAGAAGAAGGACGAAGCCGATCCCAGATTG
GGCAAGAGGAAGGAGATTGGAAGGATCCCTTCACGCACAATTCGGAGGAT
ATGGTGGACCGAGAATTGACCCAGACCATGTGTTTGCAGAGATTAAAACG
TGTGACCTTGAAGAAATTTTCCAAGTTCCTGCTGGAAAGCGCCTCCGTGC
AAGAGGATCAAGCGGGAATTGGGAACCCGATGCACTTACATCTGCAGAGA
AAGACAAGTATCGAAAAGACATGGGATTTGGAGGAAATTAAGCTGTACAA
CCTCCAACTGTAACTCCTGGACCATCCTCTTCCTCCTCTTCTTCTTCATC
TGCTGTTAGGTCTGCAGTTGCTCCATCTAGTAGTAAACCAAAGCGTCCAG
AAGATAATTATGAATTGTCAGAGAGAGAAGAATCAAGTGATGATGAAGAG
GAAACTGCAGCAAGAAGAAGGACGAAGCCGATCCCAGATTGGGCAAGAGG
AAGGAGATTGGAAGGATCCCTTCACGCACAATTCGGAGGATATGGTGGAC
CGAGAATTGACCCAGACCATGTGTTTGCAGAGATTAAAACGTGTGACCTT
GAAGAAATTTTCCAAGTTCCTGCTGGAAAGCGCCTCCGTGCAAGAGGATC
AAGCGGGAATTGGGAACCCGATGCACTTACATCTGCAGAGAAAGACAAGT
ATCGAAAAGACATGGGATTTGGAGGAAATTAA
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