mRNA_M-pyrifera_M_contig76525.18036.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76525.18036.1
Unique NamemRNA_M-pyrifera_M_contig76525.18036.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Match: A0A5A8DN24_CAFRO (SANT_DAMP1_like domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DN24_CAFRO)

HSP 1 Score: 165 bits (417), Expect = 1.210e-45
Identity = 76/123 (61.79%), Postives = 96/123 (78.05%), Query Frame = 1 
Query:    1 RGGRATRWAWRPFTSSAR-RDGLELSHWVRAASEFPDYPFARFNKRVDIVRYTDEEYRRLLLPVSGGVEDDSDSRWTREHTDLLLELCRRFDLRWPVIHDRFHLRPHHSIEDMQQRFYTVSSR 366
            RG +  +WAWRPFTSSAR +D L+LSHWVRA++EFPDYPFARFNK++D++RYTDE+YR+ L P       D DS+WTRE TD L +LCRR+DLRW VI DRF  R    +E++++RFYTV SR
Sbjct:   74 RGKKTAKWAWRPFTSSARSKDSLQLSHWVRASAEFPDYPFARFNKKIDLIRYTDEDYRKYLAPSPDAPSTDPDSQWTREMTDTLFDLCRRYDLRWAVIRDRFPWR-FVQVEELKRRFYTVMSR 195
[Close]
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Match: A0A7S1CBT4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBT4_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.270e-40
Identity = 71/130 (54.62%), Postives = 95/130 (73.08%), Query Frame = 1 
Query:    1 RGGRAT-RWAWRPFTSSARRDGLELSHWVRAASEFPDYPFARFNKRVDIVRYTDEEYRRLLLPVSGGVEDDSDS-------RWTREHTDLLLELCRRFDLRWPVIHDRFHLRPHHSIEDMQQRFYTVSSR 366
            RGGR+T +WAW+PFT+SARRD L LSHWVRA++EF DYPFARF K+ +IVRYTD+EYR  L       + D+ +       RW++E TD L +LCRRFDLRW VI DR+   P   IE++++RFY+V+++
Sbjct:   57 RGGRSTTKWAWKPFTNSARRDRLRLSHWVRASAEFDDYPFARFAKQSEIVRYTDDEYRSHLASPPAPTDGDAAATAAAEAARWSKEETDHLFDLCRRFDLRWAVIADRYEQSPSRPIEELKERFYSVTAK 186
[Close]
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Match: A0A8K0KTB4_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KTB4_LADFU)

HSP 1 Score: 127 bits (318), Expect = 3.760e-32
Identity = 59/116 (50.86%), Postives = 76/116 (65.52%), Query Frame = 1 
Query:   22 WAWRPFTSSARRDGLELSHWVRAASEFPDYPFARFNKRVDIVRYTDEEYRRLLLPVSGGVEDDSDSRWTREHTDLLLELCRRFDLRWPVIHDRFHLR--PHHSIEDMQQRFYTVSS 363
            W W PFT+ AR+DG    HW R A E  +YPFA+FNK+V+I  YTD EYR  L     GV       W+RE TD L++LCRRFDLR+PVIHDR+     P  S+ED+++R+Y + S
Sbjct:   89 WKWMPFTNPARKDGAVFHHWRRVADEGKEYPFAQFNKQVNIPTYTDNEYRAALATGVPGVTAGGPEGWSREETDHLMDLCRRFDLRFPVIHDRWDRSQFPERSVEDLKERYYEICS 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Match: UPI001ED8BDF7 (DNA methyltransferase 1-associated protein 1 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8BDF7)

HSP 1 Score: 125 bits (314), Expect = 1.380e-31
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 1 
Query:   22 WAWRPFTSSARRDGLELSHWVRAASEFPDYPFARFNKRVDIVRYTDEEYRRLLLPVSGGVEDDSDSRWTREHTDLLLELCRRFDLRWPVIHDRF---HLRPHHSIEDMQQRFYTVSS 363
            W W PFT+ AR+DG    HW R A E  +YPFA+FNK+V +  YTD EYR  L     GV       W+RE TD L++LCRRFDLR+P+IHDR+   H  P  S+ED+++R+Y + S
Sbjct:   89 WKWMPFTNPARKDGAVFHHWRRLADEGKEYPFAQFNKQVPVPSYTDSEYRSTLATGLPGVTAGGQDGWSREETDHLMDLCRRFDLRFPIIHDRWDRSHF-PERSVEDLKERYYEICS 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Match: A0A7C8YVL1_OPUST (Myb-like domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YVL1_OPUST)

HSP 1 Score: 119 bits (299), Expect = 2.690e-31
Identity = 57/116 (49.14%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:   22 WAWRPFTSSARRDGLELSHWVRAASEFP---DYPFARFNKRVDIVRYTDEEYRRLLLPVSGGVEDDSDSRWTREHTDLLLELCRRFDLRWPVIHDRFHLRPHHSIEDMQQRFYTVS 360
            W W PFT+SAR+D L+L HWVR  +  P   DYPFA++NK VD+V+YTDEEY + L          +D +WT+E TD+L +LC+RFDLR+ VI DRF      ++E+++ R+Y+VS
Sbjct:   49 WQWLPFTNSARKDNLQLYHWVRVVNGVPPTGDYPFAKYNKSVDVVKYTDEEYEKHL----------TDPKWTKEETDILFDLCQRFDLRFVVIADRFP--SPRTVEELKDRYYSVS 152
[Close]
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Match: A0A7R9Y843_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y843_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.690e-31
Identity = 56/117 (47.86%), Postives = 76/117 (64.96%), Query Frame = 1 
Query:    7 GRATRWAWRPFTSSARRDGLELSHWVRAASEFPDYPFARFNKRVDIVRYTDEEYRRLLLPVSGGVEDDSDSRWTREHTDLLLELCRRFDLRWPVIHDRFHLRPHHSIEDMQQRFYTV 357
            G+  +W W  F +SAR D     HW +A+ E+PDYPF+RFN  ++ V Y+DEEY ++L   SG         WTR  TD L+ LC+R+DLRWPVI DR+ L P  ++EDMQ+R+Y V
Sbjct:   76 GQEGKWKWTTFKNSARGDKFSAKHWQKASVEYPDYPFSRFNVSLESVVYSDEEYDKVL--ASGS--------WTRSETDYLMILCQRYDLRWPVIADRYTLTPLRAVEDMQKRYYDV 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Match: A0A0L0RXQ6_ALLM3 (SWR1-complex protein 4 n=3 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RXQ6_ALLM3)

HSP 1 Score: 122 bits (305), Expect = 1.410e-30
Identity = 62/120 (51.67%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:   10 RATRWAWRPFTSSARRDGLELSHWVRAASEFPDYPFARFNKRVDIVRYTDEEYRRLLLPVSGGVEDDSDSRWTREHTDLLLELCRRFDLRWPVIHDRFH---LRPHHSIEDMQQRFYTVS 360
            R T+W WRPFTSSAR DGL L HW  A+    DY F+ FNK+VD+V+YTD+EY R L     G  D     WTRE TD L+ LCR+FDLR+PVI+DR+     +P   +ED+++R+  VS
Sbjct:   79 RVTKWEWRPFTSSARTDGLALRHWANASENDDDYRFSSFNKQVDVVQYTDDEYERGL-----GRPD-----WTREETDQLMALCRQFDLRYPVIYDRWENVPSQPVKDMEDLKERYVEVS 188
[Close]
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Match: A0A812YY75_9DINO (SWC4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YY75_9DINO)

HSP 1 Score: 122 bits (307), Expect = 2.250e-30
Identity = 63/115 (54.78%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:   25 AWRPFTSSARRDGLELSHWVRAASEFPDYPFARFNKRVDIVRYTDEEYRRLLLPVSG-GVEDDSDSRWTREHTDLLLELCRRFDLRWPVIHDRFHLRPHHSIEDMQQRFYTVSSR 366
            A +PFTSSARRD L L HW RA +EF DYPFA+FN+RVDIVRYTDEEY +L +P +G  V +D D+RW +EHTD L EL                    H+IEDM+ RFYTV+ R
Sbjct:  214 ALKPFTSSARRDQLTLKHWERAHAEFVDYPFAKFNRRVDIVRYTDEEYAQLCMPAAGVKVSEDQDARWPKEHTDKLFEL--------------------HTIEDMKLRFYTVTVR 308
[Close]
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Match: A0A7R9UM92_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UM92_DIALT)

HSP 1 Score: 118 bits (295), Expect = 2.580e-30
Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:    7 GRATRWAWRPFTSSARRDGLELSHWVRAASEFPDYPFARFNKRVDIVRYTDEEYRRLLLPVSGGVEDDSDSRWTREHTDLLLELCRRFDLRWPVIHDRFHLRPHHSIEDMQQRFYTVS 360
            GR +RWAW+PFTSSAR DGL L HW   + +  DY FARFNK+V +  YTD EY + L           D  W+R+ TD L+ELC  F+LR+ V+HDR+  R  HS+E +++R+Y V+
Sbjct:   66 GRVSRWAWKPFTSSARSDGLALHHWANVSDKAADYKFARFNKQVRVPSYTDAEYEQHL----------QDEDWSRQATDKLIELCALFELRFTVVHDRWTGR--HSVEQLKERYYAVA 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Match: UPI00106B11CF (DNA methyltransferase 1-associated protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B11CF)

HSP 1 Score: 121 bits (303), Expect = 4.890e-30
Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = 1 
Query:   22 WAWRPFTSSARRDGLELSHWVRAASEFPDYPFARFNKRVDIVRYTDEEYRRLLLPVSGGVEDDSDSRWTREHTDLLLELCRRFDLRWPVIHDRFHLRPH--HSIEDMQQRFYTVSSR 366
            W W PFT+ AR DG    HW R A E  DYPFA+FNK+V+++ YTDEEY+  L+       D S S W++E TD L E+CRRFDLR+ +IHDR+    +   SIED++ R+Y   +R
Sbjct:   86 WKWMPFTNPARTDGAVFHHWRRLADEGKDYPFAKFNKKVNVIEYTDEEYKMYLV-------DSSQSGWSKEETDYLFEMCRRFDLRFFIIHDRYDKEKYKERSIEDLKDRYYDSVTR 195
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76525.18036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DN24_CAFRO1.210e-4561.79SANT_DAMP1_like domain-containing protein n=5 Tax=... [more]
A0A7S1CBT4_9STRA1.270e-4054.62Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8K0KTB4_LADFU3.760e-3250.86Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
UPI001ED8BDF71.380e-3149.57DNA methyltransferase 1-associated protein 1 n=1 T... [more]
A0A7C8YVL1_OPUST2.690e-3149.14Myb-like domain-containing protein (Fragment) n=1 ... [more]
A0A7R9Y843_9STRA3.690e-3147.86Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A0L0RXQ6_ALLM31.410e-3051.67SWR1-complex protein 4 n=3 Tax=Allomyces macrogynu... [more]
A0A812YY75_9DINO2.250e-3054.78SWC4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7R9UM92_DIALT2.580e-3048.31Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
UPI00106B11CF4.890e-3048.72DNA methyltransferase 1-associated protein 1-like ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76525contigM-pyrifera_M_contig76525:3..368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score122.5
Seed ortholog evalue1.4e-25
Seed eggNOG ortholog28583.AMAG_00786T0
Preferred nameSWC4
KEGG koko:K11324
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003714,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034728,GO:0035267,GO:0036211,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097346,GO:0140110,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:2001141
EggNOG free text desc.Component of the SWR1 complex which mediates the ATP- dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair (By similarity)
EggNOG OGs38KYC@33154,3P02A@4751,KOG2656@1,KOG2656@2759
COG Functional cat.K
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.4851832-CDS-M-pyrifera_M_contig76525:2..3681622816664.4851832-CDS-M-pyrifera_M_contig76525:2..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76525 3..368 -
1692278106.4495544-CDS-M-pyrifera_M_contig76525:2..3681692278106.4495544-CDS-M-pyrifera_M_contig76525:2..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76525 3..368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76525.18036.1prot_M-pyrifera_M_contig76525.18036.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76525 3..368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76525.18036.1

>prot_M-pyrifera_M_contig76525.18036.1 ID=prot_M-pyrifera_M_contig76525.18036.1|Name=mRNA_M-pyrifera_M_contig76525.18036.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
RGGRATRWAWRPFTSSARRDGLELSHWVRAASEFPDYPFARFNKRVDIVR
YTDEEYRRLLLPVSGGVEDDSDSRWTREHTDLLLELCRRFDLRWPVIHDR
FHLRPHHSIEDMQQRFYTVSSR
back to top

mRNA from alignment at M-pyrifera_M_contig76525:3..368-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76525.18036.1 ID=mRNA_M-pyrifera_M_contig76525.18036.1|Name=mRNA_M-pyrifera_M_contig76525.18036.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig76525:3..368- (Macrocystis pyrifera P11B4 male)
CGTGGGGGTAGGGCCACTCGTTGGGCGTGGCGTCCGTTCACTTCGTCTGC
GCGTCGTGATGGGCTGGAGTTGAGTCACTGGGTGCGTGCGGCGAGCGAGT
TTCCGGATTATCCGTTTGCGCGGTTCAACAAGCGCGTGGACATTGTGCGG
TATACGGACGAGGAGTACCGCCGTTTGTTGCTGCCCGTGTCGGGGGGTGT
GGAGGATGACAGCGATTCTCGCTGGACTCGAGAGCATACCGATCTTTTGC
TGGAGCTGTGTCGGCGGTTCGATTTGCGGTGGCCCGTGATCCATGACCGG
TTCCACTTGCGACCGCACCACTCGATCGAAGACATGCAGCAACGGTTCTA
CACTGTGAGCTCTCGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig76525:3..368-

>mRNA_M-pyrifera_M_contig76525.18036.1 ID=mRNA_M-pyrifera_M_contig76525.18036.1|Name=mRNA_M-pyrifera_M_contig76525.18036.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig76525:3..368- (Macrocystis pyrifera P11B4 male)
CGTGGGGGTAGGGCCACTCGTTGGGCGTGGCGTCCGTTCACTTCGTCTGC
GCGTCGTGATGGGCTGGAGTTGAGTCACTGGGTGCGTGCGGCGAGCGAGT
TTCCGGATTATCCGTTTGCGCGGTTCAACAAGCGCGTGGACATTGTGCGG
TATACGGACGAGGAGTACCGCCGTTTGTTGCTGCCCGTGTCGGGGGGTGT
GGAGGATGACAGCGATTCTCGCTGGACTCGAGAGCATACCGATCTTTTGC
TGGAGCTGTGTCGGCGGTTCGATTTGCGGTGGCCCGTGATCCATGACCGG
TTCCACTTGCGACCGCACCACTCGATCGAAGACATGCAGCAACGGTTCTA
CACTGTGAGCTCTCGCCGTGGGGGTAGGGCCACTCGTTGGGCGTGGCGTC
CGTTCACTTCGTCTGCGCGTCGTGATGGGCTGGAGTTGAGTCACTGGGTG
CGTGCGGCGAGCGAGTTTCCGGATTATCCGTTTGCGCGGTTCAACAAGCG
CGTGGACATTGTGCGGTATACGGACGAGGAGTACCGCCGTTTGTTGCTGC
CCGTGTCGGGGGGTGTGGAGGATGACAGCGATTCTCGCTGGACTCGAGAG
CATACCGATCTTTTGCTGGAGCTGTGTCGGCGGTTCGATTTGCGGTGGCC
CGTGATCCATGACCGGTTCCACTTGCGACCGCACCACTCGATCGAAGACA
TGCAGCAACGGTTCTACACTGTGAGCTCTCGC
back to top