mRNA_M-pyrifera_M_contig76521.18035.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76521.18035.1
Unique NamemRNA_M-pyrifera_M_contig76521.18035.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Match: UPI001CFD7A3C (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD7A3C)

HSP 1 Score: 69.3 bits (168), Expect = 2.900e-13
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    4 PFEMESIRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGAS-GEELETLLEKGRESLELVQRQALICNLYATNVPPSVMD 249
            P   + + LYRGLL+ GK+  DYN+R YV+R TRE+F++ +     E+++ L EKG ++L +VQRQ+LI  +Y+ +V  S+MD
Sbjct:   17 PTRKQILALYRGLLKGGKAFSDYNYREYVLRCTREDFRKFKSVQDSEKIKRLYEKGVKNLGVVQRQSLINQIYSKHV--SIMD 97          
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Match: A0A6A5BYR4_NAEFO (Complex1_LYR_dom domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BYR4_NAEFO)

HSP 1 Score: 68.9 bits (167), Expect = 4.200e-13
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    4 PFEMESIRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGAS-GEELETLLEKGRESLELVQRQALICNLYATNVPPSVMD 249
            P   + + LYRGLL+ GK+  DYN+R YV+R TRE+F++ +     E+++ L EKG ++L +VQRQ+LI  +Y+ +V  S+MD
Sbjct:   18 PTRNQILALYRGLLKGGKAFSDYNYREYVLRCTREDFRKFKSVQDSEKIKRLYEKGVKNLGVVQRQSLINQMYSKHV--SIMD 98          
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Match: A0A7S1G6K1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6K1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.760e-12
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   16 ESIRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGASGEELETLLEKGRESLELVQRQALICNLYATNVPPSVMD 249
            ++I LYR  +R  K  KDYNFR Y +RR R  F+ +R ASG+     L +G  +LE+++RQALI +LY T    SVM+
Sbjct:    9 QAISLYRSFVREAKGFKDYNFREYALRRARAGFEENRAASGDAAAAALAEGNAALEVLRRQALISSLY-TKGGASVME 85          
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Match: A0A1E4TLP4_9ASCO (Complex1_LYR_dom domain-containing protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TLP4_9ASCO)

HSP 1 Score: 65.5 bits (158), Expect = 3.130e-12
Identity = 31/69 (44.93%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   16 ESIRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGASGE-ELETLLEKGRESLELVQRQALICNLY 219
            E+ +LYR +LR GK  +DYNFR+Y+VRRTR+ F+ H+  +   +++ L+E G + LE+V+RQ++I  +Y
Sbjct:    3 EAAKLYRNILRYGKKFQDYNFRSYIVRRTRDGFREHQHETDSGKIQALMEDGYKQLEVVKRQSVISEMY 71          
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Match: A0A0G4IIG7_PLABS (Complex1_LYR_dom domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IIG7_PLABS)

HSP 1 Score: 65.1 bits (157), Expect = 4.900e-12
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    4 PFEMESIRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGASGEELETLLEKGRESLELVQRQALICNLYA 222
            P     + LY+ + RAG   KD+NFR YVVRR RE F+  R A+G +   L EKG E L++V+RQ+ +  +YA
Sbjct:    6 PTRSACLALYKNVRRAGLQFKDFNFREYVVRRARERFEAGRAATGADAARLYEKGIEDLQVVRRQSTLNRMYA 78          
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Match: D2UZZ2_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UZZ2_NAEGR)

HSP 1 Score: 65.1 bits (157), Expect = 9.730e-12
Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   22 IRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGASGEE-LETLLEKGRESLELVQRQALICNLYATNVPPSVMD 249
            + LY+GLL+ GK   DYNFR Y +R TRE+F++++  + +E ++ L EKG ++L +VQRQ+LI  +Y+  +  S+MD
Sbjct:   12 LSLYKGLLKGGKQFSDYNFREYTLRCTREDFKKNKTITDKEKIKQLYEKGIKNLGIVQRQSLINQMYSKQI--SIMD 86          
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Match: A0A8J2WRI3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WRI3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.360e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   13 MESIRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGASGEELETLLEKGRESLELVQRQALICNLYATNVPPSVMD 249
            M +  L+R +LR    +  YNFRNY +RR RE+F+R+   SG E  T L++G+++LE+++RQ ++  LY      SVMD
Sbjct:    1 MAARSLFRTMLREAAQVDQYNFRNYAIRRVREDFRRNAALSGSEAATALQEGKDALEVLRRQRIVGQLYPA--AQSVMD 77          
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Match: W7XKG2_TETTS (Complex 1 protein, LYR family protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=W7XKG2_TETTS)

HSP 1 Score: 61.6 bits (148), Expect = 1.050e-10
Identity = 30/71 (42.25%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   10 EMESIRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGASGE-ELETLLEKGRESLELVQRQALICNLY 219
            +++ ++L++  LRAG   KDYNFRNY+VRR +E+F+++   + + E+   ++  +E LEL+QRQ +I NLY
Sbjct:    5 KIQVLQLFKETLRAGFGFKDYNFRNYIVRRAKEDFRKYSALTDQNEIAKQIQFAKEQLELLQRQKIIQNLY 75          
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Match: A0A836CF60_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF60_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.570e-10
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   19 SIRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGASGEELETLLEKGRESLELVQRQALICNLYATNVPPSVMD 249
            ++ LYR LLR GK + DYNFR Y +RR R+ F      +GE     L  G++ L ++QRQA++  LY     PSVM+
Sbjct:    4 AVSLYRQLLREGKKLTDYNFRMYSLRRVRQGFAEDASLTGEAANKALAFGKDQLAMLQRQAILSQLYPA--APSVME 78          
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Match: A0A3S0ZHP3_ELYCH (Complex1_LYR_dom domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZHP3_ELYCH)

HSP 1 Score: 60.5 bits (145), Expect = 3.390e-10
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    4 PFEMESIRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGASGE-ELETLLEKGRESLELVQRQALICNLYAT 225
            P     + LY+ LLR    + DYNFR Y +RRT++ F+ ++  S    ++ LL+KGRE+LE+++RQA++  LY +
Sbjct:    4 PVRQTVLTLYKSLLRESGKITDYNFRLYAIRRTQDAFKENKAVSDTARVQALLQKGRENLEVLKRQAVLSQLYGS 78          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76521.18035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CFD7A3C2.900e-1344.58uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BYR4_NAEFO4.200e-1344.58Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A7S1G6K1_9STRA2.760e-1246.15Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1E4TLP4_9ASCO3.130e-1244.93Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A0G4IIG7_PLABS4.900e-1245.21Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D2UZZ2_NAEGR9.730e-1244.16Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A8J2WRI3_9STRA1.360e-1141.77Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7XKG2_TETTS1.050e-1042.25Complex 1 protein, LYR family protein n=1 Tax=Tetr... [more]
A0A836CF60_9STRA2.570e-1042.86Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A3S0ZHP3_ELYCH3.390e-1040.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76521contigM-pyrifera_M_contig76521:25..622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue9e-10
Seed eggNOG ortholog227086.JGI_V11_49904
Preferred nameLYRM4
KEGG koko:K22069
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016226,GO:0016604,GO:0019866,GO:0019898,GO:0022607,GO:0031090,GO:0031163,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044571,GO:0051186,GO:0070013,GO:0071840,GO:1990221
EggNOG free text desc.metallo-sulfur cluster assembly
EggNOG OGsKOG3801@1,KOG3801@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons2
Model size249
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76521.18035.1prot_M-pyrifera_M_contig76521.18035.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76521 25..610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.4190867-CDS-M-pyrifera_M_contig76521:24..2071622816664.4190867-CDS-M-pyrifera_M_contig76521:24..207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76521 25..207 -
1692278106.4150138-CDS-M-pyrifera_M_contig76521:24..2071692278106.4150138-CDS-M-pyrifera_M_contig76521:24..207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76521 25..207 -
1622816664.431993-CDS-M-pyrifera_M_contig76521:556..6101622816664.431993-CDS-M-pyrifera_M_contig76521:556..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76521 557..610 -
1692278106.42825-CDS-M-pyrifera_M_contig76521:556..6101692278106.42825-CDS-M-pyrifera_M_contig76521:556..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76521 557..610 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.443779-UTR-M-pyrifera_M_contig76521:610..6221622816664.443779-UTR-M-pyrifera_M_contig76521:610..622Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76521 611..622 -
1692278106.439663-UTR-M-pyrifera_M_contig76521:610..6221692278106.439663-UTR-M-pyrifera_M_contig76521:610..622Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76521 611..622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76521.18035.1

>prot_M-pyrifera_M_contig76521.18035.1 ID=prot_M-pyrifera_M_contig76521.18035.1|Name=mRNA_M-pyrifera_M_contig76521.18035.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MESIRLYRGLLRAGKSMKDYNFRNYVVRRTREEFQRHRGASGEELETLLE
KGRESLELVQRQALICNLYATNVPPSVMD
back to top

mRNA from alignment at M-pyrifera_M_contig76521:25..622-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76521.18035.1 ID=mRNA_M-pyrifera_M_contig76521.18035.1|Name=mRNA_M-pyrifera_M_contig76521.18035.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=598bp|location=Sequence derived from alignment at M-pyrifera_M_contig76521:25..622- (Macrocystis pyrifera P11B4 male)
GTTCCATTCGAGATGGAGAGCATTAGGTTGTACAGAGGACTGTTGCGGGC TGGGAAAAGCATGAAGGTAAAGGGAGAGTGGGGGTTGGTGGGGATCGAAG TTTGGTTTGGAATGTTATAGGGAGGGTGAGAGGGTGTGGGAGGGGTGAAA GTGGTTTTGAGAAGTACAGTAAGGGGGAGGGAGGGTGGGTGGTGGTTGTG GGGCGTGGAGAACGAGGGGAAAATTGTGAGTTGGTGCTGAGTTCTTCCTT TTGAGCTGGTTGAGGTGGGTTTTGGAAGTGGTGTGGGGATAAAGTCGGAA ATCATTGTCTAGATAGGTGGTTGGTGCACATGAAAGGCCCCCTTATACTC CACACACTGCGTTACACGTCAGCTTTTTCCAAGCCCACCTTTTTCTCCCA TTCCCTTCTTTTCAGGATTATAATTTCCGAAACTATGTGGTGCGTCGTAC TCGAGAGGAATTCCAGCGTCATCGAGGTGCAAGTGGAGAGGAGTTGGAGA CGTTGCTGGAGAAAGGGAGGGAGAGTTTGGAATTGGTGCAGCGCCAAGCG CTCATCTGCAACCTCTACGCCACCAACGTCCCTCCATCCGTCATGGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig76521:25..622-

>mRNA_M-pyrifera_M_contig76521.18035.1 ID=mRNA_M-pyrifera_M_contig76521.18035.1|Name=mRNA_M-pyrifera_M_contig76521.18035.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig76521:25..622- (Macrocystis pyrifera P11B4 male)
ATGGAGAGCATTAGGTTGTACAGAGGACTGTTGCGGGCTGGGAAAAGCAT
GAAGATGGAGAGCATTAGGTTGTACAGAGGACTGTTGCGGGCTGGGAAAA
GCATGAAGGATTATAATTTCCGAAACTATGTGGTGCGTCGTACTCGAGAG
GAATTCCAGCGTCATCGAGGTGCAAGTGGAGAGGAGTTGGAGACGTTGCT
GGAGAAAGGGAGGGAGAGTTTGGAATTGGTGCAGCGCCAAGCGCTCATCT
GCAACCTCTACGCCACCAACGTCCCTCCATCCGTCATGGATGATTATAAT
TTCCGAAACTATGTGGTGCGTCGTACTCGAGAGGAATTCCAGCGTCATCG
AGGTGCAAGTGGAGAGGAGTTGGAGACGTTGCTGGAGAAAGGGAGGGAGA
GTTTGGAATTGGTGCAGCGCCAAGCGCTCATCTGCAACCTCTACGCCACC
AACGTCCCTCCATCCGTCATGGAT
back to top