mRNA_M-pyrifera_M_contig76483.18029.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76483.18029.1
Unique NamemRNA_M-pyrifera_M_contig76483.18029.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76483.18029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76483contigM-pyrifera_M_contig76483:207..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.1542392-UTR-M-pyrifera_M_contig76483:206..2091622816664.1542392-UTR-M-pyrifera_M_contig76483:206..209Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76483 207..209 +
1692278106.2887063-UTR-M-pyrifera_M_contig76483:206..2091692278106.2887063-UTR-M-pyrifera_M_contig76483:206..209Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76483 207..209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.171224-CDS-M-pyrifera_M_contig76483:209..5481622816664.171224-CDS-M-pyrifera_M_contig76483:209..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76483 210..548 +
1692278106.2976232-CDS-M-pyrifera_M_contig76483:209..5481692278106.2976232-CDS-M-pyrifera_M_contig76483:209..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76483 210..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76483.18029.1prot_M-pyrifera_M_contig76483.18029.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76483 210..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76483.18029.1

>prot_M-pyrifera_M_contig76483.18029.1 ID=prot_M-pyrifera_M_contig76483.18029.1|Name=mRNA_M-pyrifera_M_contig76483.18029.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MSLPRFIPNDQYTEPAYISARSGHFDTPLRFVYRPMATIHVAEMTDLKER
MEDDAFEARCHAELADRVTQWNLTQENGEGLEITAANIAKLSPRLLVTLF
AVVAGFVHDDLDP
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mRNA from alignment at M-pyrifera_M_contig76483:207..548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76483.18029.1 ID=mRNA_M-pyrifera_M_contig76483.18029.1|Name=mRNA_M-pyrifera_M_contig76483.18029.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig76483:207..548+ (Macrocystis pyrifera P11B4 male)
CCAATGAGTCTTCCGCGGTTCATACCCAACGACCAATATACGGAGCCAGC
GTACATCAGCGCCCGTTCGGGGCACTTTGATACGCCACTTCGGTTTGTTT
ATCGCCCCATGGCGACAATCCATGTGGCTGAAATGACCGACTTGAAAGAG
CGAATGGAAGACGATGCCTTCGAGGCGAGATGCCATGCGGAACTAGCTGA
TCGAGTGACCCAATGGAATCTCACCCAGGAGAATGGCGAGGGTCTCGAGA
TCACCGCAGCCAACATTGCAAAGCTCAGCCCCCGGTTGCTTGTGACGCTA
TTTGCCGTTGTGGCTGGTTTCGTTCACGACGACCTGGATCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76483:207..548+

>mRNA_M-pyrifera_M_contig76483.18029.1 ID=mRNA_M-pyrifera_M_contig76483.18029.1|Name=mRNA_M-pyrifera_M_contig76483.18029.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig76483:207..548+ (Macrocystis pyrifera P11B4 male)
ATGAGTCTTCCGCGGTTCATACCCAACGACCAATATACGGAGCCAGCGTA
CATCAGCGCCCGTTCGGGGCACTTTGATACGCCACTTCGGTTTGTTTATC
GCCCCATGGCGACAATCCATGTGGCTGAAATGACCGACTTGAAAGAGCGA
ATGGAAGACGATGCCTTCGAGGCGAGATGCCATGCGGAACTAGCTGATCG
AGTGACCCAATGGAATCTCACCCAGGAGAATGGCGAGGGTCTCGAGATCA
CCGCAGCCAACATTGCAAAGCTCAGCCCCCGGTTGCTTGTGACGCTATTT
GCCGTTGTGGCTGGTTTCGTTCACGACGACCTGGATCCGATGAGTCTTCC
GCGGTTCATACCCAACGACCAATATACGGAGCCAGCGTACATCAGCGCCC
GTTCGGGGCACTTTGATACGCCACTTCGGTTTGTTTATCGCCCCATGGCG
ACAATCCATGTGGCTGAAATGACCGACTTGAAAGAGCGAATGGAAGACGA
TGCCTTCGAGGCGAGATGCCATGCGGAACTAGCTGATCGAGTGACCCAAT
GGAATCTCACCCAGGAGAATGGCGAGGGTCTCGAGATCACCGCAGCCAAC
ATTGCAAAGCTCAGCCCCCGGTTGCTTGTGACGCTATTTGCCGTTGTGGC
TGGTTTCGTTCACGACGACCTGGATCCG
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