mRNA_M-pyrifera_M_contig7641.18015.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7641.18015.1
Unique NamemRNA_M-pyrifera_M_contig7641.18015.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7641.18015.1 vs. uniprot
Match: D7FSE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE6_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.150e-34
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 VGQPKFSMETHAPSRLPPGFSVKRFADLPSCRDFIHSAGGTLVGVEIGDGAKNVDEDPFTGTCAFMAGNEAS 216
            VGQPKFS+ETHAP  LPPG +  RF+DLPSCRD++HS GGTL+GVEIG GA+N+DE+PF GTCAFM GNEAS
Sbjct:   45 VGQPKFSIETHAPRGLPPGITFTRFSDLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNEAS 116
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BLAST of mRNA_M-pyrifera_M_contig7641.18015.1 vs. uniprot
Match: A0A6H5KWR0_9PHAE (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWR0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.500e-33
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:    1 VGQPKFSMETHAPSRLPPGFSVKRFADLPSCRDFIHSAGGTLVGVEIGDGAKNVDEDPFTGTCAFMAGNEAS 216
            VGQPKFS+ETHAP  LPPG +  RF+DLPSCRD++HS GGTL+GVEIG GA+N+DE+PF GTCAFM GNE S
Sbjct:   40 VGQPKFSIETHAPRGLPPGITFTRFSDLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNEGS 111
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BLAST of mRNA_M-pyrifera_M_contig7641.18015.1 vs. uniprot
Match: A0A7S1C439_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C439_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.730e-6
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:    1 VGQPKFSM-ETHAPSRLPPGFSVKRFADLPSCRDFIHSAGGTLVGVEIGDGAKNVDEDPFTGTCAFMAGNEAS 216
            VG PKFS+  +H   R     + ++ A L      +   G ++VGVEI  GA+ V E PFTG+CAFM GNE +
Sbjct:   88 VGSPKFSLFGSHGSGRH---INFEKHAKLEDAAASLRERGVSVVGVEIMPGARPVHEHPFTGSCAFMLGNEGT 157
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7641.18015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSE6_ECTSI1.150e-3475.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWR0_9PHAE5.500e-3373.61SpoU_methylase domain-containing protein n=1 Tax=E... [more]
A0A7S1C439_9STRA1.730e-642.47Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7641contigM-pyrifera_M_contig7641:4946..5161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D7FSE6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.rRNA methyltransferase
EggNOG OGsCOG0566@1,KOG0838@2759
Ec32 ortholog descriptiontRNA (guanine-N1-)-methyltransferase, N-terminal
Ec32 orthologEc-25_000890.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.539135-CDS-M-pyrifera_M_contig7641:4945..51401622816663.539135-CDS-M-pyrifera_M_contig7641:4945..5140Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7641 4946..5140 -
1692278105.9032078-CDS-M-pyrifera_M_contig7641:4945..51401692278105.9032078-CDS-M-pyrifera_M_contig7641:4945..5140Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7641 4946..5140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.5504463-UTR-M-pyrifera_M_contig7641:5140..51611622816663.5504463-UTR-M-pyrifera_M_contig7641:5140..5161Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7641 5141..5161 -
1692278105.9150581-UTR-M-pyrifera_M_contig7641:5140..51611692278105.9150581-UTR-M-pyrifera_M_contig7641:5140..5161Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7641 5141..5161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7641.18015.1prot_M-pyrifera_M_contig7641.18015.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7641 4946..5140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7641.18015.1

>prot_M-pyrifera_M_contig7641.18015.1 ID=prot_M-pyrifera_M_contig7641.18015.1|Name=mRNA_M-pyrifera_M_contig7641.18015.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
METHAPSRLPPGFSVKRFADLPSCRDFIHSAGGTLVGVEIGDGAKNVDED
PFTGTCAFMAGNEAS
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mRNA from alignment at M-pyrifera_M_contig7641:4946..5161-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7641.18015.1 ID=mRNA_M-pyrifera_M_contig7641.18015.1|Name=mRNA_M-pyrifera_M_contig7641.18015.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig7641:4946..5161- (Macrocystis pyrifera P11B4 male)
GTCGGGCAGCCCAAGTTTTCCATGGAGACCCACGCTCCTAGCCGCCTTCC
CCCTGGGTTTTCCGTGAAGCGTTTCGCAGACCTCCCGTCGTGTCGAGATT
TCATTCACTCCGCTGGGGGCACTCTAGTGGGCGTGGAGATCGGTGACGGG
GCAAAGAACGTGGACGAAGACCCTTTCACGGGGACGTGTGCCTTTATGGC
GGGAAATGAGGCAAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7641:4946..5161-

>mRNA_M-pyrifera_M_contig7641.18015.1 ID=mRNA_M-pyrifera_M_contig7641.18015.1|Name=mRNA_M-pyrifera_M_contig7641.18015.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig7641:4946..5161- (Macrocystis pyrifera P11B4 male)
ATGGAGACCCACGCTCCTAGCCGCCTTCCCCCTGGGTTTTCCGTGAAGCG
TTTCGCAGACCTCCCGTCGTGTCGAGATTTCATTCACTCCGCTGGGGGCA
CTCTAGTGGGCGTGGAGATCGGTGACGGGGCAAAGAACGTGGACGAAGAC
CCTTTCACGGGGACGTGTGCCTTTATGGCGGGAAATGAGGCAAGTATGGA
GACCCACGCTCCTAGCCGCCTTCCCCCTGGGTTTTCCGTGAAGCGTTTCG
CAGACCTCCCGTCGTGTCGAGATTTCATTCACTCCGCTGGGGGCACTCTA
GTGGGCGTGGAGATCGGTGACGGGGCAAAGAACGTGGACGAAGACCCTTT
CACGGGGACGTGTGCCTTTATGGCGGGAAATGAGGCAAGT
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