mRNA_M-pyrifera_M_contig76348.18001.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76348.18001.1
Unique NamemRNA_M-pyrifera_M_contig76348.18001.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Match: A0A812P5J9_9DINO (Tyrosine aminotransferase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812P5J9_9DINO)

HSP 1 Score: 139 bits (349), Expect = 1.360e-36
Identity = 73/123 (59.35%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   58 IVPSKMALRVSNPIRAVVDTIRRPKD--KKIIPLSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAARYSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP 420
            I PS  + RV NPIRA+VD I++P D  K++IPLSLGDPTVF N  TP+YFV KL   L     NGY HSAG PAARAAVAARY T   PLT ED+V+T GCS AL+ A  VLL  G+ +++P
Sbjct:   20 IEPSAFSKRVHNPIRAIVDNIKKPDDPDKELIPLSLGDPTVFGNFKTPQYFVDKLQENLLSFKHNGYVHSAGPPAARAAVAARYGTATSPLTAEDVVITCGCSGALDFAIGVLLSPGQKLLLP 142          
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Match: A0A5A8DUZ8_CAFRO (Tyrosine aminotransferase n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8DUZ8_CAFRO)

HSP 1 Score: 132 bits (331), Expect = 5.100e-34
Identity = 69/123 (56.10%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   58 IVPSKMALRVSNPIRAVVDTIRRPKDK--KIIPLSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAARYSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP 420
            +  S+ A R  NPIRA+VDTI+ P+DK  ++IPLSLGDPTVF N  TP+ FV  +   LD  + NGY HSAG+ AAR A+A RYS+EA PLT +D+V+ SGCS AL++A  VL   G NIV+P
Sbjct:   15 VAASETANRTMNPIRAIVDTIKFPEDKTKEVIPLSLGDPTVFGNFKTPELFVKAIKDNLDALSCNGYVHSAGTVAARKAIAQRYSSEAAPLTSDDVVIASGCSGALDLAITVLCNPGSNIVIP 137          
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Match: A0A6A3TKJ0_9STRA (Aminotran_1_2 domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TKJ0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.860e-29
Identity = 62/123 (50.41%), Postives = 81/123 (65.85%), Query Frame = 1
Query:   58 IVPSKMALRVSNPIRAVVDTIRRP--KDKKIIPLSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAARYSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP 420
            I PS  +   +NPIR +VD I++P    K++IPLSLGDPTVF NLH P   V+ +         NGY HSAGS AARAA+A RY     PLTP+D+++TSGCS A+++A   LL  G NI++P
Sbjct:   14 IQPSDFSKLCNNPIRKIVDNIKKPATSTKELIPLSLGDPTVFGNLHCPDVLVNAIVRHTRSMQHNGYIHSAGSGAARAAIAQRYGNARAPLTPDDVIITSGCSGAIDIAVRGLLNPGDNILLP 136          
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Match: A0A8K1CE66_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE66_PYTOL)

HSP 1 Score: 117 bits (294), Expect = 1.360e-28
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 1
Query:   58 IVPSKMALRVSNPIRAVVDTIRRPK--DKKIIPLSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAARYSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP 420
            +VPS+ ++  +NPIR +VD I++PK  DK +IPLSLGDPTVF NL  P   V  +   +     NGY HSAG  AAR A+A  + ++A PLT EDIV+ SGCS A+++A   LL  G NI++P
Sbjct:   26 VVPSEFSMLTANPIRKIVDNIKKPKNSDKSLIPLSLGDPTVFGNLKCPDVLVESIVRNVRSMKHNGYIHSAGPEAAREAIAKHFGSDAAPLTKEDIVIASGCSGAIDIALTGLLNPGDNILLP 148          
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Match: A0A2P4XPM0_9STRA (Tyrosine aminotransferase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPM0_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.600e-28
Identity = 64/134 (47.76%), Postives = 79/134 (58.96%), Query Frame = 1
Query:   25 DAGATSGVYERIVPSKMALRVSNPIRAVVDTIRRP--KDKKIIPLSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAARYSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP 420
            DA A   +   + PS+ +   SNPIR +VD I++P    K +IPLSLGDPTVF NLH P   V  +         NGY HSAGS AAR A+A  Y     PLT  DIV+ SGCS A+E+A   LL  G NI++P
Sbjct:   10 DAPAKEKLQWNVQPSEFSKLCSNPIRKIVDNIKKPATSTKTLIPLSLGDPTVFGNLHCPDVLVQAIVRNTRSMQHNGYIHSAGSEAARTAIAQHYGNNRAPLTMNDIVIASGCSGAIEIALLGLLNAGDNILLP 143          
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Match: H3G6I8_PHYRM (Tyrosine aminotransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6I8_PHYRM)

HSP 1 Score: 114 bits (284), Expect = 2.790e-27
Identity = 62/123 (50.41%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   58 IVPSKMALRVSNPIRAVVDTIRRPKD--KKIIPLSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAARYSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP 420
            + PS  + R  NPIR +VD+I++P +  K +IPLSLGDPTVF NLH P   V  +         NGY HSAGS AARAA+A  Y     PLT +DI++TSGCS AL++A   LL  G+NI++P
Sbjct:    7 VQPSDSSKRCFNPIRKIVDSIKKPVNFSKTMIPLSLGDPTVFGNLHCPDVLVEAIVRNTRSMQHNGYIHSAGSEAARAAIAHHYGNSKAPLTVDDIIITSGCSGALDIAFRGLLNPGENILLP 129          
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Match: M4B8U6_HYAAE (Tyrosine aminotransferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8U6_HYAAE)

HSP 1 Score: 113 bits (283), Expect = 7.600e-27
Identity = 61/123 (49.59%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   58 IVPSKMALRVSNPIRAVVDTIRRP--KDKKIIPLSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAARYSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP 420
            + PS  +   SNPIR +VD I++P    KK+IPLSLGDPTVF NLH P   V  +         NGY HSAGS AAR A+A  +     PLT ED+++TSGCS A+E+A   LL  G NI++P
Sbjct:   74 VQPSAFSKLCSNPIREIVDNIKKPATSTKKLIPLSLGDPTVFGNLHCPDVLVEAIVRNTRSMQHNGYIHSAGSEAARTAIAEHFGKPEAPLTMEDVIITSGCSGAIEIALQGLLNPGDNILLP 196          
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Match: A0A7S3UZ19_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UZ19_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.780e-27
Identity = 63/131 (48.09%), Postives = 84/131 (64.12%), Query Frame = 1
Query:   37 TSGVYERIVPSKMALRVSNPIRAVVDTI---RRPKDKKIIPLSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAARYSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP 420
            T G  + +  S+ ALR  NPIR +VD +     P+DK +I LS+GDPT F NL TP+ FV  +   + D +S+GYTHSAG PAARAAVA RYS     L  +D+++ SGCS ALE+A   L   G N+++P
Sbjct:   19 TCGDRKPLPMSQCALRSRNPIREIVDNLVIPTPPEDKPLILLSIGDPTKFGNLKTPQIFVDAICEAVRDFSSHGYTHSAGIPAARAAVAQRYSYGGSKLVEDDVIIASGCSGALEIAIKALASEGDNMLVP 149          
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Match: W2PW18_PHYPN (Tyrosine aminotransferase, variant n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PW18_PHYPN)

HSP 1 Score: 110 bits (276), Expect = 1.140e-26
Identity = 61/123 (49.59%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   58 IVPSKMALRVSNPIRAVVDTIRRP--KDKKIIPLSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAARYSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP 420
            + PS  A   SNPIR +VD I++P    K +IPLSLGDPTVF NLH P   V  +         NGY HSAGS AARAA+A  +     PLT +DI++ SGCS A+E+A   LL  G NI++P
Sbjct:   26 VQPSDFANLCSNPIRKIVDNIKKPATSTKTLIPLSLGDPTVFGNLHCPDVLVQAIVRNTRSMQHNGYIHSAGSEAARAAIAQHFGNMRAPLTMDDIIIASGCSGAIEIALRGLLNPGDNILLP 148          
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Match: H3GJ12_PHYRM (Tyrosine aminotransferase n=15 Tax=Phytophthora TaxID=4783 RepID=H3GJ12_PHYRM)

HSP 1 Score: 111 bits (278), Expect = 2.590e-26
Identity = 61/123 (49.59%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   58 IVPSKMALRVSNPIRAVVDTIRRP--KDKKIIPLSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAARYSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP 420
            + PS  +   SNPIR +VD I++P    K +IPLSLGDPTVF NLH P   V  +         NGY HSAGS AARAA+A  Y     PLT +DI++ SGCS A+E+A   LL  G NI++P
Sbjct:   29 VQPSDFSKLCSNPIRKIVDNIKKPATSTKTLIPLSLGDPTVFGNLHCPDVLVQAIVRNTRSMQHNGYIHSAGSEAARAAIAQHYGNMRAPLTMDDIIIASGCSGAIEIALRGLLNPGDNILLP 151          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76348.18001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812P5J9_9DINO1.360e-3659.35Tyrosine aminotransferase n=1 Tax=Symbiodinium sp.... [more]
A0A5A8DUZ8_CAFRO5.100e-3456.10Tyrosine aminotransferase n=2 Tax=Sar TaxID=269873... [more]
A0A6A3TKJ0_9STRA5.860e-2950.41Aminotran_1_2 domain-containing protein n=6 Tax=Ph... [more]
A0A8K1CE66_PYTOL1.360e-2849.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4XPM0_9STRA2.600e-2847.76Tyrosine aminotransferase n=2 Tax=Phytophthora pal... [more]
H3G6I8_PHYRM2.790e-2750.41Tyrosine aminotransferase n=1 Tax=Phytophthora ram... [more]
M4B8U6_HYAAE7.600e-2749.59Tyrosine aminotransferase n=1 Tax=Hyaloperonospora... [more]
A0A7S3UZ19_9STRA9.780e-2748.09Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
W2PW18_PHYPN1.140e-2649.59Tyrosine aminotransferase, variant n=8 Tax=Phytoph... [more]
H3GJ12_PHYRM2.590e-2649.59Tyrosine aminotransferase n=15 Tax=Phytophthora Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76348contigM-pyrifera_M_contig76348:4..423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.5e-23
Seed eggNOG ortholog164328.Phyra46323
Preferred nameTAT
KEGG rclassRC00006
KEGG koko:K00815
KEGG ReactionR00694,R00734,R07396
KEGG Pathwayko00130,ko00270,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01230,map00130,map00270,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01230
KEGG ModuleM00025,M00034
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004838,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006094,GO:0006103,GO:0006520,GO:0006536,GO:0006558,GO:0006559,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009072,GO:0009074,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0014070,GO:0016051,GO:0016054,GO:0016597,GO:0016740,GO:0016769,GO:0017144,GO:0019318,GO:0019319,GO:0019439,GO:0019752,GO:0031406,GO:0031960,GO:0033993,GO:0036094,GO:0042221,GO:0042737,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046395,GO:0046689,GO:0048545,GO:0050896,GO:0051186,GO:0051384,GO:0070547,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1902221,GO:1902222
EggNOG free text desc.Cys/Met metabolism PLP-dependent enzyme
EggNOG OGs3QF2Q@4776,COG0436@1,KOG0259@2759
EC2.6.1.5
COG Functional cat.E
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Exons1
Model size420
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816662.903895-CDS-M-pyrifera_M_contig76348:3..4231622816662.903895-CDS-M-pyrifera_M_contig76348:3..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76348 4..423 -
1692278105.6021605-CDS-M-pyrifera_M_contig76348:3..4231692278105.6021605-CDS-M-pyrifera_M_contig76348:3..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76348 4..423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76348.18001.1prot_M-pyrifera_M_contig76348.18001.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76348 4..423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76348.18001.1

>prot_M-pyrifera_M_contig76348.18001.1 ID=prot_M-pyrifera_M_contig76348.18001.1|Name=mRNA_M-pyrifera_M_contig76348.18001.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
MSIAGEAGDAGATSGVYERIVPSKMALRVSNPIRAVVDTIRRPKDKKIIP
LSLGDPTVFRNLHTPKYFVSKLHSLLDDETSNGYTHSAGSPAARAAVAAR
YSTEAHPLTPEDIVLTSGCSHALEMAAAVLLETGKNIVMP
back to top

mRNA from alignment at M-pyrifera_M_contig76348:4..423-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76348.18001.1 ID=mRNA_M-pyrifera_M_contig76348.18001.1|Name=mRNA_M-pyrifera_M_contig76348.18001.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig76348:4..423- (Macrocystis pyrifera P11B4 male)
ATGTCAATTGCAGGAGAAGCAGGAGATGCAGGTGCTACAAGTGGTGTGTA CGAGAGAATTGTGCCATCAAAAATGGCTCTACGTGTTTCCAACCCTATTC GGGCAGTAGTGGATACAATTCGGAGACCAAAGGACAAGAAGATCATTCCA CTGTCATTGGGTGACCCCACAGTGTTCCGAAACTTGCATACGCCAAAGTA TTTCGTTTCCAAGCTCCATAGCTTGCTCGATGACGAAACTTCGAATGGGT ACACCCATTCTGCTGGTAGTCCTGCAGCACGTGCAGCGGTTGCAGCTCGT TACTCTACGGAAGCGCATCCATTGACCCCAGAAGACATCGTTTTGACTTC TGGGTGCAGCCATGCGTTGGAAATGGCAGCTGCAGTGTTATTGGAAACTG GAAAGAATATTGTAATGCCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig76348:4..423-

>mRNA_M-pyrifera_M_contig76348.18001.1 ID=mRNA_M-pyrifera_M_contig76348.18001.1|Name=mRNA_M-pyrifera_M_contig76348.18001.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig76348:4..423- (Macrocystis pyrifera P11B4 male)
ATGTCAATTGCAGGAGAAGCAGGAGATGCAGGTGCTACAAGTGGTGTGTA
CGAGAGAATTGTGCCATCAAAAATGGCTCTACGTGTTTCCAACCCTATTC
GGGCAGTAGTGGATACAATTCGGAGACCAAAGGACAAGAAGATCATTCCA
CTGTCATTGGGTGACCCCACAGTGTTCCGAAACTTGCATACGCCAAAGTA
TTTCGTTTCCAAGCTCCATAGCTTGCTCGATGACGAAACTTCGAATGGGT
ACACCCATTCTGCTGGTAGTCCTGCAGCACGTGCAGCGGTTGCAGCTCGT
TACTCTACGGAAGCGCATCCATTGACCCCAGAAGACATCGTTTTGACTTC
TGGGTGCAGCCATGCGTTGGAAATGGCAGCTGCAGTGTTATTGGAAACTG
GAAAGAATATTGTAATGCCAATGTCAATTGCAGGAGAAGCAGGAGATGCA
GGTGCTACAAGTGGTGTGTACGAGAGAATTGTGCCATCAAAAATGGCTCT
ACGTGTTTCCAACCCTATTCGGGCAGTAGTGGATACAATTCGGAGACCAA
AGGACAAGAAGATCATTCCACTGTCATTGGGTGACCCCACAGTGTTCCGA
AACTTGCATACGCCAAAGTATTTCGTTTCCAAGCTCCATAGCTTGCTCGA
TGACGAAACTTCGAATGGGTACACCCATTCTGCTGGTAGTCCTGCAGCAC
GTGCAGCGGTTGCAGCTCGTTACTCTACGGAAGCGCATCCATTGACCCCA
GAAGACATCGTTTTGACTTCTGGGTGCAGCCATGCGTTGGAAATGGCAGC
TGCAGTGTTATTGGAAACTGGAAAGAATATTGTAATGCCA
back to top