mRNA_M-pyrifera_M_contig76337.17996.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76337.17996.1
Unique NamemRNA_M-pyrifera_M_contig76337.17996.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76337.17996.1 vs. uniprot
Match: A0A3C0Q846_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0Q846_9GAMM)

HSP 1 Score: 224 bits (570), Expect = 1.300e-63
Identity = 118/314 (37.58%), Postives = 190/314 (60.51%), Query Frame = 1 
Query:   61 PHYQRSVISSLKQQMHAIDQATRGILSCLRILAGYDPSRHLQPTPAKNSWGRLLRWEPARFVRALFPAICFIVSFMFWIIYNPPNGKDLPMMTAIFGMLMLLLPMDPMKFLIAMPASLLLFVAPVYFFIMPSLSNGFGILSVIFCYSFVFSWIGAKWPVLKIGPMVTFVMVVNITNEQTYSFMGFVNGSMIMTMAIVVVAIVHMLMHPLQPKQLLRYKLRRFVYACAQITSSFIRHKSGKNAKEFLLRTHYFGSLITPMPQQLQLLEKEFADRLFKTDGDIKMQQLLSGLQGIVDRLKILETSHQYLLKSASEL 1002
            PH+Q++ + +L  Q+H +D+++R +L  LR+LA  DP   LQ         +   W P R ++ALFPAIC+ + + FW+  NPP G  +PMM+AIFG++M++ P +    LI +  S+ + VAPVY F+MP+L +GFG+L++IF Y+FVF ++G + P+LKIGP+  FVM+V+I N+Q YSF+  V   ++M + I +V + H L+ P+ P+++L   +R F+   A+I + F  H   +  +    R   F + I P+  QL  +EK     LF  + + K+Q+L+  LQ +  RL+ LE S       + EL
Sbjct:  314 PHFQQATLMNLVAQLHILDRSSRELLQTLRVLANLDPGSKLQNYALITDPFQPSAWNPDRLLKALFPAICWGIGYAFWVYVNPPGGPAIPMMSAIFGLMMVMAPANLFGLLIVLLLSMFIAVAPVYMFLMPTLDSGFGLLALIFIYTFVFGYLGGRSPILKIGPLAMFVMMVDINNQQNYSFIALVTTGLVMLLGISIVVVAHRLLSPMHPEKVLLRSVRHFLAGSARIINDFRLHSPRQQGRGRKRRKRAFETAILPISAQLLSIEKSLDYALFPDNTEEKVQRLVDSLQSVRLRLQTLEASFTTAESESPEL 627
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BLAST of mRNA_M-pyrifera_M_contig76337.17996.1 vs. uniprot
Match: D8FDV6_9DELT (Uncharacterized protein n=1 Tax=delta proteobacterium NaphS2 TaxID=88274 RepID=D8FDV6_9DELT)

HSP 1 Score: 203 bits (517), Expect = 5.590e-56
Identity = 110/313 (35.14%), Postives = 178/313 (56.87%), Query Frame = 1 
Query:   64 HYQRSVISSLKQQMHAIDQATRGILSCLRILAGYDPSRHLQPTPAKNSWGRLLRWEPARFVRALFPAICFIVSFMFWIIYNPPNGKDLPMMTAIFGMLMLLLPMDPMKFLIAMPASLLLFVAPVYFFIMPSLSNGFGILSVIFCYSFVFSWIGAKWPVLKIGPMVTFVMVVNITNEQTYSFMGFVNGSMIMTMAIVVVAIVHMLMHPLQPKQLLRYKLRRFVYACAQITSSFIRHKSGKNAKEFLLRTHYFGSLITPMPQQLQLLEKEFADRLFKTDGDIKMQQLLSGLQGIVDRLKILETSHQYLLKSASEL 1002
            H+ R+V  +  QQ+  ++QATR +L  LRI+ G D  + +  +   +       WEP R  +ALFP +CFI ++ FWI  NPP G  LP       + +L  P+ P+  LI M   +   VAPVYFF+MP+LS GFG+L +IF Y+FVF ++GAK P LK+ P++ FVM+  I+N Q YSF G    S+++ + ++++A+VHML  P +P++++   ++RF   C ++T++F         K  +LR  Y  S + P  +QL   +K    +LF  +   K+ +L++ L  ++ R   L  +   +   A +L
Sbjct:  321 HFDRAVFMNFLQQLKILEQATRDLLHSLRIIKGLDAEKEVSVSSPTSDPYESSGWEPQRLRKALFPVLCFIAAYFFWIYVNPPGGPSLPATVISISLSLLTTPISPVLMLIVMLVVMWTVVAPVYFFLMPALSAGFGLLGLIFVYTFVFGYVGAKSPALKLVPILLFVMMTGISNTQAYSFFGLAVPSLMLGLVLIIIAVVHMLWTPSRPERVILGSIKRFFKGCEKVTAAFAYGDPKTWEKGRILRKRYAESFLLPGVRQLAASQKHLDYKLFPDNDPDKVARLIAALHQVIHRFHALAIAFDQVGAKAPDL 633
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BLAST of mRNA_M-pyrifera_M_contig76337.17996.1 vs. uniprot
Match: A0A5C6DNK8_9BACT (Fusaric acid resistance protein family protein n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DNK8_9BACT)

HSP 1 Score: 171 bits (434), Expect = 2.420e-44
Identity = 102/315 (32.38%), Postives = 171/315 (54.29%), Query Frame = 1 
Query:   64 HYQRSVISSLKQQMHAIDQATRGILSCLRILAGYDPSRHLQPTPAKNSWGRLLRWEPARFVRALFPAICFIVSFMFWIIYNPPNGKDLPMMTAIFGMLMLLLPMDPMKFLIAMPASLLLFVAPVYFFIMPSLSNGFGILSVIFCYSFVFS-WIGAKWPVLKIGPMVTFVMVVNITNEQTYSFMGFVNGSMIMTMAIVVVAIVHMLMHPLQPKQLLRYKLRRFVYACAQITSSFIRHKSGKNAKEFLLRTHYFGSLITPMPQQLQLLEKEFADRLFKTDGDIKMQQLLSGLQGIVDRLKILETSHQYLLKSASELP 1005
            H +R+ + +   Q++ + + +  +L  +R+L+   P + L          R  RW+ ARF   L PA+ FIV + FWI  NPP G  +P +   FG++ +  PM+ ++ +  +   L   VAPVYF +MP LS G  +LS+IF + F+   ++  +   L+   +  FV++  I+N Q+YSFMG V+G+M++  A+V+V IV  LM  ++ +Q +   +R F   CA++TSS+   + G      + R  Y  S++ P   ++Q L+K    + F  +   K+QQL   +Q IV+RL+ LE S       A +LP
Sbjct:  312 HLERAALLNFASQLNLLHRTSGRLLRIMRVLSDLSPVKELDAHALPTDLYRPPRWDAARFTFGLLPAVSFIVGWFFWIYVNPPTGPSVPNLAVSFGLMAVRTPMNVLRLVPIVFIVLWGLVAPVYFLVMPRLSTGPELLSLIFVFVFLARLFLVGRLTALRSVVLPAFVVISGISNNQSYSFMGIVSGAMLVLFALVIVGIVQTLMGSMKSEQTMLNSVRWFFSGCARVTSSYAWERHGNRTGSQVQRKRYLDSMVLPASAKVQALKKRLDYKQFPDNSPDKVQQLDDAMQSIVNRLQALENSQHEFANHAKQLP 626
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BLAST of mRNA_M-pyrifera_M_contig76337.17996.1 vs. uniprot
Match: A0A518IZR5_9BACT (p-hydroxybenzoic acid efflux pump subunit AaeB n=2 Tax=Rosistilla oblonga TaxID=2527990 RepID=A0A518IZR5_9BACT)

HSP 1 Score: 141 bits (356), Expect = 3.160e-34
Identity = 76/191 (39.79%), Postives = 114/191 (59.69%), Query Frame = 1 
Query:   73 RSVISSLKQQMHAIDQATRGILSCLRILAGYDPSRHLQPTPAKNSWGRLLRWEPARFVRALFPAICFIVSFMFWIIYNPPNGKDLPMMTAIFGMLMLLLPMDPMKFLIAMPASLLLFVAPVYFFIMPSLSNGFGILSVIFCYSFVFSWIGAKWPVLKIGPMVTFVMVVNITNEQTYSFMGFVNGSMIMTMA 645
            R V+++   Q+  +D A+  +L+  R+LAGY P R L  + A         W   RF RAL+P + FIV F+FWI  NPP    +P+   I  + +L  PM+P+  L  M  S L  VAPVY+F+MP  ++GF +L +IF Y+F F ++G +   LK GPM+ FV V  I+N+Q+YSF   V G++++ +A
Sbjct:  333 REVLTNFLHQLQDLDHASLILLATQRMLAGYKPIRELPDSIAIQEEHATPLWNAVRFERALYPPVAFIVGFLFWIFMNPPGATGVPLYCGIISLAVLRTPMNPIAGLALMLLSALFVVAPVYWFVMPMFTSGFELLGLIFAYAFTFGYLGERSAALKSGPMLIFVSVTGISNQQSYSFQEIVVGTLLILLA 523
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76337.17996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A3C0Q846_9GAMM1.300e-6337.58Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
D8FDV6_9DELT5.590e-5635.14Uncharacterized protein n=1 Tax=delta proteobacter... [more]
A0A5C6DNK8_9BACT2.420e-4432.38Fusaric acid resistance protein family protein n=1... [more]
A0A518IZR5_9BACT3.160e-3439.79p-hydroxybenzoic acid efflux pump subunit AaeB n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76337contigM-pyrifera_M_contig76337:3..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1023
Cds size1023
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816662.7092235-CDS-M-pyrifera_M_contig76337:2..10251622816662.7092235-CDS-M-pyrifera_M_contig76337:2..1025Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76337 3..1025 +
1692278105.4982958-CDS-M-pyrifera_M_contig76337:2..10251692278105.4982958-CDS-M-pyrifera_M_contig76337:2..1025Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76337 3..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76337.17996.1prot_M-pyrifera_M_contig76337.17996.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76337 3..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76337.17996.1

>prot_M-pyrifera_M_contig76337.17996.1 ID=prot_M-pyrifera_M_contig76337.17996.1|Name=mRNA_M-pyrifera_M_contig76337.17996.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=341bp
DSSLENELNIEINHEISHTLPHYQRSVISSLKQQMHAIDQATRGILSCLR
ILAGYDPSRHLQPTPAKNSWGRLLRWEPARFVRALFPAICFIVSFMFWII
YNPPNGKDLPMMTAIFGMLMLLLPMDPMKFLIAMPASLLLFVAPVYFFIM
PSLSNGFGILSVIFCYSFVFSWIGAKWPVLKIGPMVTFVMVVNITNEQTY
SFMGFVNGSMIMTMAIVVVAIVHMLMHPLQPKQLLRYKLRRFVYACAQIT
SSFIRHKSGKNAKEFLLRTHYFGSLITPMPQQLQLLEKEFADRLFKTDGD
IKMQQLLSGLQGIVDRLKILETSHQYLLKSASELPPEITNL
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mRNA from alignment at M-pyrifera_M_contig76337:3..1025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76337.17996.1 ID=mRNA_M-pyrifera_M_contig76337.17996.1|Name=mRNA_M-pyrifera_M_contig76337.17996.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at M-pyrifera_M_contig76337:3..1025+ (Macrocystis pyrifera P11B4 male)
GATTCAAGTCTAGAGAACGAATTAAACATTGAGATTAACCACGAAATAAG
TCATACCCTACCACATTATCAACGCAGTGTAATATCTTCACTTAAACAGC
AAATGCACGCTATTGACCAAGCTACTCGCGGCATCTTAAGTTGTTTAAGA
ATATTAGCAGGTTATGATCCCAGTCGACACCTGCAACCCACACCCGCCAA
AAATAGTTGGGGTCGACTGTTGCGTTGGGAACCTGCGCGATTCGTCAGGG
CTTTATTCCCAGCAATTTGCTTCATCGTGAGCTTTATGTTCTGGATCATT
TACAATCCACCCAACGGCAAAGACTTACCCATGATGACGGCTATTTTTGG
TATGCTCATGTTATTGCTACCCATGGACCCCATGAAATTTTTAATTGCCA
TGCCAGCCAGCCTATTGCTTTTTGTCGCACCGGTATATTTTTTTATAATG
CCAAGTTTAAGTAATGGGTTTGGTATTTTAAGTGTAATTTTTTGTTATTC
ATTTGTTTTTAGTTGGATAGGCGCAAAGTGGCCTGTCTTAAAAATAGGCC
CCATGGTCACATTTGTCATGGTAGTAAATATAACCAACGAACAAACTTAT
TCTTTCATGGGCTTTGTGAATGGCTCAATGATCATGACTATGGCCATTGT
TGTTGTGGCTATCGTGCATATGTTGATGCATCCACTGCAACCAAAACAGT
TGCTGCGTTACAAATTGCGGCGGTTTGTCTATGCATGTGCACAAATCACC
TCAAGTTTTATTCGCCACAAGTCAGGTAAAAATGCTAAGGAATTTCTATT
GCGCACCCATTATTTTGGCTCATTAATCACACCTATGCCACAACAATTGC
AGTTGTTAGAAAAAGAATTTGCCGATCGATTATTTAAAACAGATGGTGAC
ATAAAAATGCAACAATTGCTAAGTGGATTGCAAGGCATTGTCGACCGCTT
GAAAATACTCGAAACATCGCATCAATACTTACTCAAAAGCGCAAGTGAGC
TTCCACCTGAAATTACAAATTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76337:3..1025+

>mRNA_M-pyrifera_M_contig76337.17996.1 ID=mRNA_M-pyrifera_M_contig76337.17996.1|Name=mRNA_M-pyrifera_M_contig76337.17996.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2046bp|location=Sequence derived from alignment at M-pyrifera_M_contig76337:3..1025+ (Macrocystis pyrifera P11B4 male)
GATTCAAGTCTAGAGAACGAATTAAACATTGAGATTAACCACGAAATAAG
TCATACCCTACCACATTATCAACGCAGTGTAATATCTTCACTTAAACAGC
AAATGCACGCTATTGACCAAGCTACTCGCGGCATCTTAAGTTGTTTAAGA
ATATTAGCAGGTTATGATCCCAGTCGACACCTGCAACCCACACCCGCCAA
AAATAGTTGGGGTCGACTGTTGCGTTGGGAACCTGCGCGATTCGTCAGGG
CTTTATTCCCAGCAATTTGCTTCATCGTGAGCTTTATGTTCTGGATCATT
TACAATCCACCCAACGGCAAAGACTTACCCATGATGACGGCTATTTTTGG
TATGCTCATGTTATTGCTACCCATGGACCCCATGAAATTTTTAATTGCCA
TGCCAGCCAGCCTATTGCTTTTTGTCGCACCGGTATATTTTTTTATAATG
CCAAGTTTAAGTAATGGGTTTGGTATTTTAAGTGTAATTTTTTGTTATTC
ATTTGTTTTTAGTTGGATAGGCGCAAAGTGGCCTGTCTTAAAAATAGGCC
CCATGGTCACATTTGTCATGGTAGTAAATATAACCAACGAACAAACTTAT
TCTTTCATGGGCTTTGTGAATGGCTCAATGATCATGACTATGGCCATTGT
TGTTGTGGCTATCGTGCATATGTTGATGCATCCACTGCAACCAAAACAGT
TGCTGCGTTACAAATTGCGGCGGTTTGTCTATGCATGTGCACAAATCACC
TCAAGTTTTATTCGCCACAAGTCAGGTAAAAATGCTAAGGAATTTCTATT
GCGCACCCATTATTTTGGCTCATTAATCACACCTATGCCACAACAATTGC
AGTTGTTAGAAAAAGAATTTGCCGATCGATTATTTAAAACAGATGGTGAC
ATAAAAATGCAACAATTGCTAAGTGGATTGCAAGGCATTGTCGACCGCTT
GAAAATACTCGAAACATCGCATCAATACTTACTCAAAAGCGCAAGTGAGC
TTCCACCTGAAATTACAAATTTAGATTCAAGTCTAGAGAACGAATTAAAC
ATTGAGATTAACCACGAAATAAGTCATACCCTACCACATTATCAACGCAG
TGTAATATCTTCACTTAAACAGCAAATGCACGCTATTGACCAAGCTACTC
GCGGCATCTTAAGTTGTTTAAGAATATTAGCAGGTTATGATCCCAGTCGA
CACCTGCAACCCACACCCGCCAAAAATAGTTGGGGTCGACTGTTGCGTTG
GGAACCTGCGCGATTCGTCAGGGCTTTATTCCCAGCAATTTGCTTCATCG
TGAGCTTTATGTTCTGGATCATTTACAATCCACCCAACGGCAAAGACTTA
CCCATGATGACGGCTATTTTTGGTATGCTCATGTTATTGCTACCCATGGA
CCCCATGAAATTTTTAATTGCCATGCCAGCCAGCCTATTGCTTTTTGTCG
CACCGGTATATTTTTTTATAATGCCAAGTTTAAGTAATGGGTTTGGTATT
TTAAGTGTAATTTTTTGTTATTCATTTGTTTTTAGTTGGATAGGCGCAAA
GTGGCCTGTCTTAAAAATAGGCCCCATGGTCACATTTGTCATGGTAGTAA
ATATAACCAACGAACAAACTTATTCTTTCATGGGCTTTGTGAATGGCTCA
ATGATCATGACTATGGCCATTGTTGTTGTGGCTATCGTGCATATGTTGAT
GCATCCACTGCAACCAAAACAGTTGCTGCGTTACAAATTGCGGCGGTTTG
TCTATGCATGTGCACAAATCACCTCAAGTTTTATTCGCCACAAGTCAGGT
AAAAATGCTAAGGAATTTCTATTGCGCACCCATTATTTTGGCTCATTAAT
CACACCTATGCCACAACAATTGCAGTTGTTAGAAAAAGAATTTGCCGATC
GATTATTTAAAACAGATGGTGACATAAAAATGCAACAATTGCTAAGTGGA
TTGCAAGGCATTGTCGACCGCTTGAAAATACTCGAAACATCGCATCAATA
CTTACTCAAAAGCGCAAGTGAGCTTCCACCTGAAATTACAAATTTA
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