mRNA_M-pyrifera_M_contig76279.17983.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76279.17983.1
Unique NamemRNA_M-pyrifera_M_contig76279.17983.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76279.17983.1 vs. uniprot
Match: A0A7S4IGV9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IGV9_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 3.050e-6
Identity = 49/146 (33.56%), Postives = 77/146 (52.74%), Query Frame = 1 
Query:    1 ELKSRLQAKIQAHRDARNADSERPKKKRKAENEGRKTKAEKKAGRDKPSTLNKASSADSDTPSTGDDDLQFGTFKFEGDGAKPAYLERKK--KSPYALLKAAEKEKQRLADLKGKEGGKEELIERTAEKAMKKLQGEKVKDDPARL 432
            + K RL+ KIQ  R+ RN   E P+ K++  N+ ++     K  +    T+ + +S+D +       DL F TF +    AKPAYL  KK  K+ Y+LL+  E+EK+                E+  E A++K+QGEK+KDDP ++
Sbjct:  109 DAKERLKQKIQELREKRNVSDE-PEAKKQKTNQNKEENRANKVAKIVQDTITQDASSDVE-------DLNFSTFDYSDGKAKPAYLNIKKNQKATYSLLRKVEEEKKTXXXXXXXXXXXXXXQEKKIELALRKVQGEKIKDDPNKI 246
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BLAST of mRNA_M-pyrifera_M_contig76279.17983.1 vs. uniprot
Match: UPI0007120E3A (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007120E3A)

HSP 1 Score: 52.8 bits (125), Expect = 1.660e-5
Identity = 48/147 (32.65%), Postives = 87/147 (59.18%), Query Frame = 1 
Query:    1 ELKSRLQAKIQAHRDARNADSERPKKKRKAENEGRKTKAEKKAGRDKPSTL-NKASSADSDTPSTGD--DDLQFGTFKFEGDGAKPAYLERKKKSPYALLKAAEKEKQRLADLKGKEGGKEELIERTAEKAMKKLQGEKVKDDPARL 432
            EL+ RL AKI+  R  R   + +  +K++++  G  +KAE K  R K + + NK SS +   PS  D   ++QFG  K + +    +   + +K  + LLK A+++++RL ++K  E G++E +    ++A++K++G K KD+PA+L
Sbjct:   57 ELRERLNAKIEMLRRNRIEAARKNDQKQRSKRNGGVSKAETKEKRVKTTNVENKPSSVEVIAPSVADVISNMQFGKIKTQKE-VDTSLRPKARKDIHTLLKQAQRKQERLKEMKSTEAGRKEALNLEMDEALRKVEGIKKKDNPAKL 202
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76279.17983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4IGV9_9EUKA3.050e-633.56Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI0007120E3A1.660e-532.65hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76279contigM-pyrifera_M_contig76279:541..1032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.931626-CDS-M-pyrifera_M_contig76279:540..6881622816661.931626-CDS-M-pyrifera_M_contig76279:540..688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76279 541..688 +
1692278104.996156-CDS-M-pyrifera_M_contig76279:540..6881692278104.996156-CDS-M-pyrifera_M_contig76279:540..688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76279 541..688 +
1622816661.9428658-CDS-M-pyrifera_M_contig76279:748..10321622816661.9428658-CDS-M-pyrifera_M_contig76279:748..1032Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76279 749..1032 +
1692278105.0099838-CDS-M-pyrifera_M_contig76279:748..10321692278105.0099838-CDS-M-pyrifera_M_contig76279:748..1032Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76279 749..1032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76279.17983.1prot_M-pyrifera_M_contig76279.17983.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76279 541..1032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76279.17983.1

>prot_M-pyrifera_M_contig76279.17983.1 ID=prot_M-pyrifera_M_contig76279.17983.1|Name=mRNA_M-pyrifera_M_contig76279.17983.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
ELKSRLQAKIQAHRDARNADSERPKKKRKAENEGRKTKAEKKAGRDKPST
LNKASSADSDTPSTGDDDLQFGTFKFEGDGAKPAYLERKKKSPYALLKAA
EKEKQRLADLKGKEGGKEELIERTAEKAMKKLQGEKVKDDPARL
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mRNA from alignment at M-pyrifera_M_contig76279:541..1032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76279.17983.1 ID=mRNA_M-pyrifera_M_contig76279.17983.1|Name=mRNA_M-pyrifera_M_contig76279.17983.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig76279:541..1032+ (Macrocystis pyrifera P11B4 male)
GAGTTGAAGTCTCGCCTGCAGGCGAAGATCCAGGCGCACCGCGACGCCCG
CAACGCCGACAGCGAGCGGCCTAAGAAGAAGAGAAAGGCAGAAAACGAAG
GCAGGAAGACTAAGGCAGAGAAGAAGGCAGGCAGAGACAAGCCGTCCAGT
GGAAACCGCGGCTCTTCAACACCTGCCAAGACTGCACCGGCTGCTGTCGT
TGCCGCAGCGCTTAACAAGGCCTCCTCAGCAGACAGTGACACGCCCTCAA
CCGGCGATGATGACCTCCAGTTTGGTACGTTCAAGTTCGAAGGCGACGGG
GCCAAGCCAGCCTACCTCGAGCGCAAGAAGAAGTCTCCTTATGCTCTTTT
GAAGGCTGCAGAGAAGGAGAAGCAACGGCTCGCAGATCTCAAGGGCAAGG
AAGGCGGAAAGGAAGAGCTGATCGAGCGCACTGCGGAGAAGGCTATGAAG
AAGCTCCAGGGAGAGAAAGTGAAGGACGACCCGGCTCGTCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76279:541..1032+

>mRNA_M-pyrifera_M_contig76279.17983.1 ID=mRNA_M-pyrifera_M_contig76279.17983.1|Name=mRNA_M-pyrifera_M_contig76279.17983.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig76279:541..1032+ (Macrocystis pyrifera P11B4 male)
GAGTTGAAGTCTCGCCTGCAGGCGAAGATCCAGGCGCACCGCGACGCCCG
CAACGCCGACAGCGAGCGGCCTAAGAAGAAGAGAAAGGCAGAAAACGAAG
GCAGGAAGACTAAGGCAGAGAAGAAGGCAGGCAGAGACAAGCCGTCCAGA
GTTGAAGTCTCGCCTGCAGGCGAAGATCCAGGCGCACCGCGACGCCCGCA
ACGCCGACAGCGAGCGGCCTAAGAAGAAGAGAAAGGCAGAAAACGAAGGC
AGGAAGACTAAGGCAGAGAAGAAGGCAGGCAGAGACAAGCCGTCCACGCT
TAACAAGGCCTCCTCAGCAGACAGTGACACGCCCTCAACCGGCGATGATG
ACCTCCAGTTTGGTACGTTCAAGTTCGAAGGCGACGGGGCCAAGCCAGCC
TACCTCGAGCGCAAGAAGAAGTCTCCTTATGCTCTTTTGAAGGCTGCAGA
GAAGGAGAAGCAACGGCTCGCAGATCTCAAGGGCAAGGAAGGCGGAAAGG
AAGAGCTGATCGAGCGCACTGCGGAGAAGGCTATGAAGAAGCTCCAGGGA
GAGAAAGTGAAGGACGACCCGGCTCGTCTGCGCTTAACAAGGCCTCCTCA
GCAGACAGTGACACGCCCTCAACCGGCGATGATGACCTCCAGTTTGGTAC
GTTCAAGTTCGAAGGCGACGGGGCCAAGCCAGCCTACCTCGAGCGCAAGA
AGAAGTCTCCTTATGCTCTTTTGAAGGCTGCAGAGAAGGAGAAGCAACGG
CTCGCAGATCTCAAGGGCAAGGAAGGCGGAAAGGAAGAGCTGATCGAGCG
CACTGCGGAGAAGGCTATGAAGAAGCTCCAGGGAGAGAAAGTGAAGGACG
ACCCGGCTCGTCTG
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