mRNA_M-pyrifera_M_contig7626.17980.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7626.17980.1
Unique NamemRNA_M-pyrifera_M_contig7626.17980.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Match: A0A6H5K733_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K733_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.260e-23
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    7 RTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAGGVVGRVQNITG 183
            R+N+ PGT VEVVQKQ QRTG+LT GTVSRLLT+SGFHPRGIKVMLAGGV+GRVQN+ G
Sbjct:  129 RSNVPPGTPVEVVQKQHQRTGKLTPGTVSRLLTNSGFHPRGIKVMLAGGVIGRVQNVPG 187
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BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Match: UPI00048B85E9 (YwbE family protein n=1 Tax=Proteocatella sphenisci TaxID=181070 RepID=UPI00048B85E9)

HSP 1 Score: 84.0 bits (206), Expect = 4.610e-20
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 SVRTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAGGVVGRVQNI 177
            +VR+NI  GT V VVQKQDQRTG+LT GTV RLLT+S  H RGIKVMLAGG+VGRVQ I
Sbjct:    4 TVRSNIKIGTKVMVVQKQDQRTGKLTEGTVMRLLTNSSNHHRGIKVMLAGGIVGRVQRI 62
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BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Match: A0A075K8H0_9FIRM (Uncharacterized protein n=1 Tax=Pelosinus sp. UFO1 TaxID=484770 RepID=A0A075K8H0_9FIRM)

HSP 1 Score: 82.4 bits (202), Expect = 1.610e-19
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    7 RTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAGGVVGRVQNITG 183
            R NI PGT V++VQKQDQRTGRLT G V  LLT+S  HPRGIKV L  G+VGRVQ I G
Sbjct:    6 RKNIRPGTKVKIVQKQDQRTGRLTEGVVKDLLTNSAIHPRGIKVRLVNGIVGRVQEIIG 64
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BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Match: A0A1M6WX60_9FIRM (Uncharacterized protein n=1 Tax=Hespellia stercorisuis DSM 15480 TaxID=1121950 RepID=A0A1M6WX60_9FIRM)

HSP 1 Score: 81.6 bits (200), Expect = 3.160e-19
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 SVRTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAGGVVGRVQNI 177
            +VR NI  G  V+VVQKQDQRTG+LT G V R+LT+S  HPRGIKVML GG+VGRVQ I
Sbjct:    4 TVRNNIKIGIKVQVVQKQDQRTGKLTEGVVMRILTNSSNHPRGIKVMLEGGIVGRVQKI 62
[Close]
BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Match: A0A0A5G507_9BACI (Uncharacterized protein n=1 Tax=Pontibacillus litoralis JSM 072002 TaxID=1385512 RepID=A0A0A5G507_9BACI)

HSP 1 Score: 81.6 bits (200), Expect = 3.330e-19
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    7 RTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAGGVVGRVQNI 177
            R NI PG +V+VVQKQDQRTG+LT G VSR+LT+S  HP GIKVML GG+VGRV+ I
Sbjct:    6 RENIKPGMNVKVVQKQDQRTGKLTEGVVSRILTNSSQHPHGIKVMLEGGIVGRVKEI 62
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BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Match: A0A0S6U136_CLOBO (Uncharacterized protein n=12 Tax=Clostridium TaxID=1485 RepID=A0A0S6U136_CLOBO)

HSP 1 Score: 81.3 bits (199), Expect = 4.610e-19
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 SVRTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAGGVVGRVQNI 177
            ++R NI PGT V VVQKQDQR+G+LT G V +LLT S  HPRGIKVML  G+VGRV+ I
Sbjct:    4 TIRENIRPGTKVRVVQKQDQRSGKLTEGVVEKLLTKSAIHPRGIKVMLESGIVGRVKEI 62
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BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Match: A0A4R1QMJ0_9FIRM (Putative repeat protein (TIGR03833 family) n=2 Tax=Lachnospiraceae TaxID=186803 RepID=A0A4R1QMJ0_9FIRM)

HSP 1 Score: 81.3 bits (199), Expect = 4.610e-19
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 SVRTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAGGVVGRVQNI 177
            +VR+NI  G  V VVQKQDQRTG+LT G V RLLT+S  HPRGIKVML GG+VGRVQ I
Sbjct:    4 TVRSNIKIGAKVLVVQKQDQRTGKLTEGIVQRLLTNSANHPRGIKVMLEGGIVGRVQKI 62
[Close]
BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Match: A0A1I1AFU2_9CLOT (Uncharacterized protein n=1 Tax=Clostridium frigidicarnis TaxID=84698 RepID=A0A1I1AFU2_9CLOT)

HSP 1 Score: 80.5 bits (197), Expect = 9.310e-19
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    7 RTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAGGVVGRVQNI 177
            R NI PGT V VVQKQDQR+G+LT G V R+LT+S  HPRGIKVML  G+VGRVQ +
Sbjct:    6 RENIKPGTKVMVVQKQDQRSGKLTEGVVKRILTNSHIHPRGIKVMLESGIVGRVQQV 62
[Close]
BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Match: UPI0019B610F5 (YwbE family protein n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=UPI0019B610F5)

HSP 1 Score: 80.1 bits (196), Expect = 1.320e-18
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 SVRTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAGGVVGRVQNI 177
            ++R NI  GT V+VVQKQDQRTG+LT GTV  +LT+S  HP GIKV L GG+VGRV+NI
Sbjct:    4 NIRNNIKQGTKVQVVQKQDQRTGKLTEGTVESILTNSQNHPHGIKVRLEGGIVGRVKNI 62
[Close]
BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Match: A0A7C6P2F3_9FIRM (YwbE family protein n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A7C6P2F3_9FIRM)

HSP 1 Score: 80.1 bits (196), Expect = 1.670e-18
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 SVRTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAGGVVGRVQNI 177
            +VR+NI  GT V VVQKQDQR+G+LT G V R+LT+S  HPRGIKVML GG+VGRVQ+I
Sbjct:    4 TVRSNIKIGTKVMVVQKQDQRSGKLTEGIVMRILTNSMNHPRGIKVMLEGGIVGRVQSI 62
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7626.17980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K733_9PHAE2.260e-2381.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00048B85E94.610e-2074.58YwbE family protein n=1 Tax=Proteocatella sphenisc... [more]
A0A075K8H0_9FIRM1.610e-1969.49Uncharacterized protein n=1 Tax=Pelosinus sp. UFO1... [more]
A0A1M6WX60_9FIRM3.160e-1969.49Uncharacterized protein n=1 Tax=Hespellia stercori... [more]
A0A0A5G507_9BACI3.330e-1970.18Uncharacterized protein n=1 Tax=Pontibacillus lito... [more]
A0A0S6U136_CLOBO4.610e-1966.10Uncharacterized protein n=12 Tax=Clostridium TaxID... [more]
A0A4R1QMJ0_9FIRM4.610e-1971.19Putative repeat protein (TIGR03833 family) n=2 Tax... [more]
A0A1I1AFU2_9CLOT9.310e-1968.42Uncharacterized protein n=1 Tax=Clostridium frigid... [more]
UPI0019B610F51.320e-1866.10YwbE family protein n=1 Tax=Hyphomonadaceae bacter... [more]
A0A7C6P2F3_9FIRM1.670e-1869.49YwbE family protein n=1 Tax=Clostridiales bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7626contigM-pyrifera_M_contig7626:9178..10306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.0
Seed ortholog evalue2.7e-14
Seed eggNOG ortholog1123009.AUID01000011_gene2257
Preferred nameywbE
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Uncharacterized conserved protein (DUF2196)
EggNOG OGs1VEG3@1239,24QNU@186801,26CDI@186813,COG4895@1,COG4895@2
Ec32 ortholog descriptionProtein of unknown function DUF2196
Ec32 orthologEc-02_004770.1
COG Functional cat.S
Best tax levelunclassified Clostridiales
Best eggNOG OGNA|NA|NA
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.8185525-CDS-M-pyrifera_M_contig7626:9177..92251622816661.8185525-CDS-M-pyrifera_M_contig7626:9177..9225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7626 9178..9225 -
1692278104.930552-CDS-M-pyrifera_M_contig7626:9177..92251692278104.930552-CDS-M-pyrifera_M_contig7626:9177..9225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7626 9178..9225 -
1622816661.831699-CDS-M-pyrifera_M_contig7626:10171..103061622816661.831699-CDS-M-pyrifera_M_contig7626:10171..10306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7626 10172..10306 -
1692278104.9469244-CDS-M-pyrifera_M_contig7626:10171..103061692278104.9469244-CDS-M-pyrifera_M_contig7626:10171..10306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7626 10172..10306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7626.17980.1prot_M-pyrifera_M_contig7626.17980.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7626 9178..10306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7626.17980.1

>prot_M-pyrifera_M_contig7626.17980.1 ID=prot_M-pyrifera_M_contig7626.17980.1|Name=mRNA_M-pyrifera_M_contig7626.17980.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
SVRTNISPGTSVEVVQKQDQRTGRLTSGTVSRLLTSSGFHPRGIKVMLAG
GVVGRVQNITG
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mRNA from alignment at M-pyrifera_M_contig7626:9178..10306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7626.17980.1 ID=mRNA_M-pyrifera_M_contig7626.17980.1|Name=mRNA_M-pyrifera_M_contig7626.17980.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1129bp|location=Sequence derived from alignment at M-pyrifera_M_contig7626:9178..10306- (Macrocystis pyrifera P11B4 male)
TCGGTCAGGACGAATATTTCTCCGGGAACTTCCGTCGAGGTCGTACAGAA
GCAAGACCAACGCACGGGAAGGCTCACGTCGGGAACCGTCAGCAGACTCT
TGACGAGCTCAGGGTTCCACCCCAGAGGCATCAAGGTGTGAACCGGCAAT
TTTCTCCGTCTCGCGGGTAGATGACATCGCAAATACGGTAATACATACAT
TTCTAGGGCCGTGAGCTTTGAATTGGCTGGCCTCACGCCTGCGGCAGTAG
TAGTTATTACAGTAGTTGGTAGTGAAGCAAGGCAACTAAATTTTTAGTGA
ATGAAAAACACACGTCGAATCCTAACGCGCCAGTCCAGTCAGATGCCAAG
ACGCAGTACTCCTCAAATTGCCGCGCACAAGTAACCGTAATACGTCGTTA
CCTAATAATTACAGTTGTAGTCGGCGATTTATTGTCAGTGTCGGCGGCTT
ATTGTCAGTCAACTCACAGCCCTTTACATTACACAGCAGTAGAGCAGCAG
CTGTACACACTGGTCTTCGGCGACGATACGACACGGTATCGGTATCAACG
AAATAGCTGCCTTGTAAATTGTTGACACAACCGCCCGCTCGCGACAGGAA
TGTCCTGTTATTTTGCAATGCATACTTCTCTCTGGGTCGTAATTTTGCGA
TCGCGGAACTTGTGTATATGTTGATCTACATTCGGGACCCTGGGTGCGCT
AGATGTCGTTCATGAGTAAAATTATCGGTTCAATACGAAGAACGACGACG
TGCCCGAGGAGGTGCAACACAATGGATACCGATTTTTAACCCCCAAGCGC
TGTGCACCCGTTTCGAAGGGGCGATATTGGAAGCATGTGTTATGCAGCTA
TGCCGCACGGATGGTTCCGGCTCGAAGCTGACGACCCGACGCACTCGTTT
CTGCCATCACCTGCAAGCACGACCGTCGGTGGCGGACTTCACGCCACATC
CTATGTTCCGTCGACTTGTTATGATTGCAGCCAGTATGGCAGCTCCCATG
CTGATGCTCCGATTCTCTCATACGTGCGTGCTCTTCTCTAATCGACGTTT
TTGCTGTCCCTCGGTTCATCCCCCGGTAAAGGTGATGCTTGCGGGAGGCG
TGGTAGGACGCGTGCAGAACATCACGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7626:9178..10306-

>mRNA_M-pyrifera_M_contig7626.17980.1 ID=mRNA_M-pyrifera_M_contig7626.17980.1|Name=mRNA_M-pyrifera_M_contig7626.17980.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig7626:9178..10306- (Macrocystis pyrifera P11B4 male)
TCGGTCAGGACGAATATTTCTCCGGGAACTTCCGTCGAGGTCGTACAGAA
GCAAGACCAACGCACGGGAAGGCTCACGTCGGGAACCGTCAGCAGACTCT
TGACGAGCTCAGGGTTCCACCCCAGAGGCATCAAGTCGGTCAGGACGAAT
ATTTCTCCGGGAACTTCCGTCGAGGTCGTACAGAAGCAAGACCAACGCAC
GGGAAGGCTCACGTCGGGAACCGTCAGCAGACTCTTGACGAGCTCAGGGT
TCCACCCCAGAGGCATCAAGGTGATGCTTGCGGGAGGCGTGGTAGGACGC
GTGCAGAACATCACGGGCGTGATGCTTGCGGGAGGCGTGGTAGGACGCGT
GCAGAACATCACGGGC
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