mRNA_M-pyrifera_M_contig7626.17978.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7626.17978.1
Unique NamemRNA_M-pyrifera_M_contig7626.17978.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7626.17978.1 vs. uniprot
Match: D8LJ60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ60_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 2.130e-101
Identity = 175/197 (88.83%), Postives = 182/197 (92.39%), Query Frame = 1 
Query:    1 QINATWPEKCLQPGVTRCTLEHNHRLSGPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXXXXXXXVAALPGSRVNDPIFRDSMTIIGNALRQALESGADAPGLKRRCEGFAEGLRKTTVAATDNTD-SRKRLR-DGGPVVGGALA 585
            QINATWPEKCLQPGVTRCTLEHNHRL+GPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXX     V +LP SR+NDP+FR+SMTIIGNALRQALESGADA GLKRRCEGFAEGLRKTTVAATDNTD SRKR+R DGG  +G   A
Sbjct:  179 QINATWPEKCLQPGVTRCTLEHNHRLAGPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXXSPGSVVGSLPSSRINDPVFRESMTIIGNALRQALESGADAAGLKRRCEGFAEGLRKTTVAATDNTDPSRKRIRVDGGSPLGAGAA 375
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7626.17978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ60_ECTSI2.130e-10188.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7626contigM-pyrifera_M_contig7626:387..1699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAR1 DNA binding domain
Ec32 orthologEc-02_004880.1
Exons2
Model size756
Cds size756
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.6710835-CDS-M-pyrifera_M_contig7626:386..5781622816661.6710835-CDS-M-pyrifera_M_contig7626:386..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7626 387..578 +
1692278104.8364499-CDS-M-pyrifera_M_contig7626:386..5781692278104.8364499-CDS-M-pyrifera_M_contig7626:386..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7626 387..578 +
1622816661.6838205-CDS-M-pyrifera_M_contig7626:1135..16991622816661.6838205-CDS-M-pyrifera_M_contig7626:1135..1699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7626 1136..1699 +
1692278104.854962-CDS-M-pyrifera_M_contig7626:1135..16991692278104.854962-CDS-M-pyrifera_M_contig7626:1135..1699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7626 1136..1699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7626.17978.1prot_M-pyrifera_M_contig7626.17978.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7626 387..1699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7626.17978.1

>prot_M-pyrifera_M_contig7626.17978.1 ID=prot_M-pyrifera_M_contig7626.17978.1|Name=mRNA_M-pyrifera_M_contig7626.17978.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=252bp
QINATWPEKCLQPGVTRCTLEHNHRLSGPLRAGRQDPVLPEELLAEHVSA
LKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRRAA
AAAAAAAAAAAAAPAAVVAALPGSRVNDPIFRDSMTIIGNALRQALESGA
DAPGLKRRCEGFAEGLRKTTVAATDNTDSRKRLRDGGPVVGGALAPNPML
SAVSPIPGLVTPLPGVPMTAGMALGSPPAAAMPPVLTPAPSAVPEGFVPG
P*
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mRNA from alignment at M-pyrifera_M_contig7626:387..1699+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7626.17978.1 ID=mRNA_M-pyrifera_M_contig7626.17978.1|Name=mRNA_M-pyrifera_M_contig7626.17978.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1313bp|location=Sequence derived from alignment at M-pyrifera_M_contig7626:387..1699+ (Macrocystis pyrifera P11B4 male)
CAGATCAACGCCACGTGGCCTGAGAAGTGCCTCCAGCCTGGGGTGACGAG
GTGCACCCTAGAGCACAACCACCGCCTCAGCGGACCCCTCCGCGCCGGCA
GGCAAGACCCGGTCCTTCCGGAGGAGTTGCTGGCCGAGCACGTCAGCGCA
CTCAAAGAGTGGGCTAGGATTCCCGTCGCCGTCCGCACGCAGGTAATTAC
CAGGACCACTCAATTTTTTTTGGTCTGTGCACCGTGGCGCCTGGTACGGT
GTATTGTGCATACCTCGTATGTGGTCAGTGTTTAGTGGTGACGAGTGTAA
TAGTTGCTTCGATTTCAAGCTATTGAAATTATCAAGAGTCCCTAGCTGCA
CTCGACTGAGGCAACCATCCGGCAGGCACTACTGTTCCGTGACTATGATG
ACTTGGGCGAACAAATTTTCCACGCCTCGGATAGATCGTCTAGTTCCTCG
AATGCCGCTATGAGAGGTTGTGCAAGATCTGCTTAGCACAGATAGATCCA
ACCCAAGAAATATGTGCTACAGGTACGTAGATCATACATATTGTACGAAT
CCCACCCGGCAACACGATGAGCTGTAGCAGATCCTACAAGATCGAAAATA
GAGCTAGCTGCCTCGAAATATCTACGGTAGATCATCAAGTGGGAACCGAC
TATCTGTCCGAGAGTGTAAAATGGTCCCCTGACAAATAAATGTTGTGTTT
CTTCTGATAACTAATAGTGATTTTGATCGTGTTCCCCCTGTCCGATCAGA
TGCAAATCCTGAGGCACGAGTTCTTCGAAGGCCGCCAGCTTTCTCTAGAG
GCGCAACGGTGTGTCCACACCCTCTCCGGTCAAGAAGCCCCCCGCCGCCG
CGCGGCGGCCGCTGCCGCGGCTGCCGCCGCCGCCGCCGCCGCTGCCCCCG
CGGCCGTGGTGGCCGCCCTCCCGGGGTCCCGCGTGAATGACCCCATCTTC
CGCGACAGCATGACCATCATCGGTAACGCCCTGCGGCAGGCTCTGGAATC
CGGCGCCGACGCCCCGGGCCTGAAGCGAAGGTGCGAGGGTTTCGCGGAAG
GCCTGCGGAAGACCACCGTCGCGGCCACGGATAACACGGACTCGCGCAAG
AGGTTGCGCGATGGCGGCCCCGTCGTCGGAGGAGCTCTGGCGCCGAACCC
AATGTTGTCCGCGGTGTCCCCGATCCCCGGGTTGGTAACGCCCCTTCCGG
GCGTTCCCATGACCGCGGGCATGGCCCTGGGTTCCCCCCCTGCCGCGGCT
ATGCCGCCGGTGCTGACCCCTGCCCCCTCCGCTGTTCCGGAGGGGTTCGT
CCCGGGGCCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7626:387..1699+

>mRNA_M-pyrifera_M_contig7626.17978.1 ID=mRNA_M-pyrifera_M_contig7626.17978.1|Name=mRNA_M-pyrifera_M_contig7626.17978.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1512bp|location=Sequence derived from alignment at M-pyrifera_M_contig7626:387..1699+ (Macrocystis pyrifera P11B4 male)
CAGATCAACGCCACGTGGCCTGAGAAGTGCCTCCAGCCTGGGGTGACGAG
GTGCACCCTAGAGCACAACCACCGCCTCAGCGGACCCCTCCGCGCCGGCA
GGCAAGACCCGGTCCTTCCGGAGGAGTTGCTGGCCGAGCACGTCAGCGCA
CTCAAAGAGTGGGCTAGGATTCCCGTCGCCGTCCGCACGCAGCAGATCAA
CGCCACGTGGCCTGAGAAGTGCCTCCAGCCTGGGGTGACGAGGTGCACCC
TAGAGCACAACCACCGCCTCAGCGGACCCCTCCGCGCCGGCAGGCAAGAC
CCGGTCCTTCCGGAGGAGTTGCTGGCCGAGCACGTCAGCGCACTCAAAGA
GTGGGCTAGGATTCCCGTCGCCGTCCGCACGCAGATGCAAATCCTGAGGC
ACGAGTTCTTCGAAGGCCGCCAGCTTTCTCTAGAGGCGCAACGGTGTGTC
CACACCCTCTCCGGTCAAGAAGCCCCCCGCCGCCGCGCGGCGGCCGCTGC
CGCGGCTGCCGCCGCCGCCGCCGCCGCTGCCCCCGCGGCCGTGGTGGCCG
CCCTCCCGGGGTCCCGCGTGAATGACCCCATCTTCCGCGACAGCATGACC
ATCATCGGTAACGCCCTGCGGCAGGCTCTGGAATCCGGCGCCGACGCCCC
GGGCCTGAAGCGAAGGTGCGAGGGTTTCGCGGAAGGCCTGCGGAAGACCA
CCGTCGCGGCCACGGATAACACGGACTCGCGCAAGAGGTTGCGCGATGGC
GGCCCCGTCGTCGGAGGAGCTCTGGCGCCGAACCCAATGTTGTCCGCGGT
GTCCCCGATCCCCGGGTTGGTAACGCCCCTTCCGGGCGTTCCCATGACCG
CGGGCATGGCCCTGGGTTCCCCCCCTGCCGCGGCTATGCCGCCGGTGCTG
ACCCCTGCCCCCTCCGCTGTTCCGGAGGGGTTCGTCCCGGGGCCGTGAAT
GCAAATCCTGAGGCACGAGTTCTTCGAAGGCCGCCAGCTTTCTCTAGAGG
CGCAACGGTGTGTCCACACCCTCTCCGGTCAAGAAGCCCCCCGCCGCCGC
GCGGCGGCCGCTGCCGCGGCTGCCGCCGCCGCCGCCGCCGCTGCCCCCGC
GGCCGTGGTGGCCGCCCTCCCGGGGTCCCGCGTGAATGACCCCATCTTCC
GCGACAGCATGACCATCATCGGTAACGCCCTGCGGCAGGCTCTGGAATCC
GGCGCCGACGCCCCGGGCCTGAAGCGAAGGTGCGAGGGTTTCGCGGAAGG
CCTGCGGAAGACCACCGTCGCGGCCACGGATAACACGGACTCGCGCAAGA
GGTTGCGCGATGGCGGCCCCGTCGTCGGAGGAGCTCTGGCGCCGAACCCA
ATGTTGTCCGCGGTGTCCCCGATCCCCGGGTTGGTAACGCCCCTTCCGGG
CGTTCCCATGACCGCGGGCATGGCCCTGGGTTCCCCCCCTGCCGCGGCTA
TGCCGCCGGTGCTGACCCCTGCCCCCTCCGCTGTTCCGGAGGGGTTCGTC
CCGGGGCCGTGA
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