mRNA_M-pyrifera_M_contig76258.17977.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76258.17977.1
Unique NamemRNA_M-pyrifera_M_contig76258.17977.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76258.17977.1 vs. uniprot
Match: D7FW23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW23_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 3.260e-45
Identity = 88/145 (60.69%), Postives = 102/145 (70.34%), Query Frame = 1 
Query:    1 MKHPGARSLALGMCLCLLYVGYELARACSLAMFARSGAADGLNWAYTTCGSFLLSVATLAVYGRCVEVFGEGWTLLLSAGGCSVVFLAFAAGLSACDGDSV---VLVAGLFAFRESYVTLIGTQVWALLGAELKHKGPKTSRCWF 426
            M+HPG  SLALG CLCLLY GYELARA SLA+F +S A  GL+ A T+  SF+LSVA L VYG   E  G  WTL++SAGGC VVFLAFA    AC GD+V    ++ GL+AFRE YV LI TQVW LL A LK +G + SR WF
Sbjct:    1 MRHPGGHSLALGWCLCLLYSGYELARASSLALFNKSDA--GLSGALTSTVSFVLSVAMLGVYGVGAEALGGKWTLVVSAGGCCVVFLAFA---FACFGDAVFGRTVICGLYAFREMYVALIATQVWGLLSAALKQRGERESRRWF 140
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BLAST of mRNA_M-pyrifera_M_contig76258.17977.1 vs. uniprot
Match: A0A6H5J832_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J832_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 7.070e-41
Identity = 88/145 (60.69%), Postives = 101/145 (69.66%), Query Frame = 1 
Query:    1 MKHPGARSLALGMCLCLLYVGYELARACSLAMFARSGAADGLNWAYTTCGSFLLSVATLAVYGRCVEVFGEGWTLLLSAGGCSVVFLAFAAGLSACDGDSVV---LVAGLFAFRESYVTLIGTQVWALLGAELKHKGPKTSRCWF 426
            M+HPG   LALG CLCLLY GYELARA SLA+F +S A  GL+ A T+  SF+LSVA L VYG   EV G  WTL++SA GC VVFLAFA    AC GD+ V   +V GL+AFRE YV LI TQVW LL A LK +G + SR WF
Sbjct:    1 MRHPGGHFLALGWCLCLLYSGYELARASSLALFNKSDA--GLSGALTSAVSFVLSVAMLGVYGVGAEVLGGKWTLVVSASGCCVVFLAFA---FACFGDADVSRTVVCGLYAFREMYVALIATQVWELLSAALKQRGERESRRWF 140
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76258.17977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW23_ECTSI3.260e-4560.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J832_9PHAE7.070e-4160.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76258contigM-pyrifera_M_contig76258:417..842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue1.3e-35
Seed eggNOG ortholog2880.D7FW23
Preferred nameNTT6
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.TLC ATP/ADP transporter
EggNOG OGs2CHKX@1,2SD3X@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.6361666-CDS-M-pyrifera_M_contig76258:416..8421622816661.6361666-CDS-M-pyrifera_M_contig76258:416..842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76258 417..842 +
1692278104.8120189-CDS-M-pyrifera_M_contig76258:416..8421692278104.8120189-CDS-M-pyrifera_M_contig76258:416..842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76258 417..842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76258.17977.1prot_M-pyrifera_M_contig76258.17977.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76258 417..842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76258.17977.1

>prot_M-pyrifera_M_contig76258.17977.1 ID=prot_M-pyrifera_M_contig76258.17977.1|Name=mRNA_M-pyrifera_M_contig76258.17977.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MKHPGARSLALGMCLCLLYVGYELARACSLAMFARSGAADGLNWAYTTCG
SFLLSVATLAVYGRCVEVFGEGWTLLLSAGGCSVVFLAFAAGLSACDGDS
VVLVAGLFAFRESYVTLIGTQVWALLGAELKHKGPKTSRCWF
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mRNA from alignment at M-pyrifera_M_contig76258:417..842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76258.17977.1 ID=mRNA_M-pyrifera_M_contig76258.17977.1|Name=mRNA_M-pyrifera_M_contig76258.17977.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig76258:417..842+ (Macrocystis pyrifera P11B4 male)
ATGAAGCACCCCGGAGCGCGTTCCCTCGCGCTGGGCATGTGCTTGTGCCT
CCTCTACGTCGGGTACGAGCTGGCGCGCGCCTGCTCCCTTGCCATGTTCG
CTCGCTCGGGCGCCGCGGACGGGCTCAACTGGGCCTACACGACGTGCGGC
AGCTTCCTGCTCAGCGTGGCCACGCTTGCGGTGTACGGCCGCTGCGTCGA
AGTGTTCGGGGAGGGGTGGACGCTGCTGCTCAGCGCTGGGGGATGTTCTG
TGGTGTTTCTAGCGTTTGCTGCTGGACTGTCGGCTTGCGATGGGGACTCG
GTAGTCTTGGTTGCCGGGCTGTTTGCGTTCCGCGAGAGCTATGTGACGCT
GATCGGGACGCAGGTGTGGGCTCTCCTGGGCGCTGAGCTGAAGCATAAAG
GACCCAAAACGTCACGGTGCTGGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76258:417..842+

>mRNA_M-pyrifera_M_contig76258.17977.1 ID=mRNA_M-pyrifera_M_contig76258.17977.1|Name=mRNA_M-pyrifera_M_contig76258.17977.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig76258:417..842+ (Macrocystis pyrifera P11B4 male)
ATGAAGCACCCCGGAGCGCGTTCCCTCGCGCTGGGCATGTGCTTGTGCCT
CCTCTACGTCGGGTACGAGCTGGCGCGCGCCTGCTCCCTTGCCATGTTCG
CTCGCTCGGGCGCCGCGGACGGGCTCAACTGGGCCTACACGACGTGCGGC
AGCTTCCTGCTCAGCGTGGCCACGCTTGCGGTGTACGGCCGCTGCGTCGA
AGTGTTCGGGGAGGGGTGGACGCTGCTGCTCAGCGCTGGGGGATGTTCTG
TGGTGTTTCTAGCGTTTGCTGCTGGACTGTCGGCTTGCGATGGGGACTCG
GTAGTCTTGGTTGCCGGGCTGTTTGCGTTCCGCGAGAGCTATGTGACGCT
GATCGGGACGCAGGTGTGGGCTCTCCTGGGCGCTGAGCTGAAGCATAAAG
GACCCAAAACGTCACGGTGCTGGTTCATGAAGCACCCCGGAGCGCGTTCC
CTCGCGCTGGGCATGTGCTTGTGCCTCCTCTACGTCGGGTACGAGCTGGC
GCGCGCCTGCTCCCTTGCCATGTTCGCTCGCTCGGGCGCCGCGGACGGGC
TCAACTGGGCCTACACGACGTGCGGCAGCTTCCTGCTCAGCGTGGCCACG
CTTGCGGTGTACGGCCGCTGCGTCGAAGTGTTCGGGGAGGGGTGGACGCT
GCTGCTCAGCGCTGGGGGATGTTCTGTGGTGTTTCTAGCGTTTGCTGCTG
GACTGTCGGCTTGCGATGGGGACTCGGTAGTCTTGGTTGCCGGGCTGTTT
GCGTTCCGCGAGAGCTATGTGACGCTGATCGGGACGCAGGTGTGGGCTCT
CCTGGGCGCTGAGCTGAAGCATAAAGGACCCAAAACGTCACGGTGCTGGT
TC
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