mRNA_M-pyrifera_M_contig76187.17968.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76187.17968.1
Unique NamemRNA_M-pyrifera_M_contig76187.17968.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Match: A0A7K7VCP3_EUDEL (Costars family protein ABRACL (Fragment) n=11 Tax=Aves TaxID=8782 RepID=A0A7K7VCP3_EUDEL)

HSP 1 Score: 87.8 bits (216), Expect = 3.510e-21
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 LVEEVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVITYAAPLLLKGAHDDVDIVI 207
            LVEE+RRLG +  DG V+VKFG LF DE     FEAL GTLKAAK+R V++Y   LLL+G HDDVDIV+
Sbjct:   11 LVEEIRRLGTKNADGQVSVKFGVLFADEKCANLFEALVGTLKAAKRRKVVSYQGELLLQGVHDDVDIVL 79
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BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Match: A0A8B9EVQ5_9PSIT (Costars family protein ABRACL n=2 Tax=Psittaciformes TaxID=9223 RepID=A0A8B9EVQ5_9PSIT)

HSP 1 Score: 87.8 bits (216), Expect = 3.810e-21
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 LVEEVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVITYAAPLLLKGAHDDVDIVI 207
            LVEE+RRLG    DG V+VKFG LF DE     FEAL GTLKAAK+R +ITY   LLL+G HDDVDI++
Sbjct:   14 LVEEIRRLGTRNADGQVSVKFGVLFADEKCANLFEALVGTLKAAKRRKIITYQGELLLQGVHDDVDIML 82
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BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Match: ABRAL_MOUSE (Costars family protein ABRACL n=4 Tax=Mus TaxID=862507 RepID=ABRAL_MOUSE)

HSP 1 Score: 87.4 bits (215), Expect = 4.850e-21
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 LVEEVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVITYAAPLLLKGAHDDVDIVI 207
            LVEE+ RLG +  DG ++VKFG LF D+     FEAL GTLKAAK+R ++TYA  LLL+G HDDVDIV+
Sbjct:   10 LVEEIHRLGSKNADGKLSVKFGVLFQDDRCANLFEALVGTLKAAKRRKIVTYAGELLLQGVHDDVDIVL 78
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BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Match: UPI0001549826 (MCG7517, isoform CRA_a n=2 Tax=Murinae TaxID=39107 RepID=UPI0001549826)

HSP 1 Score: 87.4 bits (215), Expect = 6.200e-21
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 LVEEVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVITYAAPLLLKGAHDDVDIVI 207
            LVEE+ RLG +  DG ++VKFG LF D+     FEAL GTLKAAK+R ++TYA  LLL+G HDDVDIV+
Sbjct:   19 LVEEIHRLGSKNADGKLSVKFGVLFQDDRCANLFEALVGTLKAAKRRKIVTYAGELLLQGVHDDVDIVL 87
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BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Match: A0A5B8MVS8_9CHLO (Costars domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MVS8_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 6.550e-21
Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   10 EVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVITYAAPLLLKGAHDDVDIVI 207
            +++R+G + +DG+  VKFG LF+DE V QY+EA+ GTLKAAKKRG I +   +LLKGAHDDVD+++
Sbjct:   18 DIKRIGTQNDDGNFTVKFGVLFEDEKVEQYYEAIVGTLKAAKKRGFIDFKGQMLLKGAHDDVDVIL 83
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BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Match: ABRAL_COTCO (Costars family protein ABRACL n=149 Tax=Aves TaxID=8782 RepID=ABRAL_COTCO)

HSP 1 Score: 87.0 bits (214), Expect = 6.890e-21
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 LVEEVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVITYAAPLLLKGAHDDVDIVI 207
            LVEE+RRLG +  DG V+VKFG LF DE     FEAL GTLKAAK+R ++TY   LLL+G HD+VDIV+
Sbjct:   10 LVEEIRRLGTKNADGQVSVKFGVLFADEKCANLFEALVGTLKAAKRRKIVTYQGELLLQGVHDNVDIVL 78
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BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Match: E9QMV2_MOUSE (Costars family protein ABRACL n=16 Tax=Eutheria TaxID=9347 RepID=E9QMV2_MOUSE)

HSP 1 Score: 87.0 bits (214), Expect = 6.890e-21
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 LVEEVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVITYAAPLLLKGAHDDVDIVI 207
            LVEE+ RLG    DG ++VKFG LF D+     FEAL GTLKAAK+R ++TYA  LLL+G HDDVDIV+
Sbjct:   10 LVEEIHRLGSRNADGKLSVKFGVLFQDDRCANLFEALVGTLKAAKRRKIVTYAGELLLQGVHDDVDIVL 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Match: A0A822EHA4_9NEOB (Costars family protein ABRACL n=5 Tax=Hyloidea TaxID=8417 RepID=A0A822EHA4_9NEOB)

HSP 1 Score: 87.0 bits (214), Expect = 6.890e-21
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 LVEEVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVITYAAPLLLKGAHDDVDIVI 207
            LVEE+RRLG +  DG ++VKFG LF+D+     FEAL GTLKAAK+R +ITY+  LLL+G HDD DIV+
Sbjct:   10 LVEEIRRLGTKGNDGKLSVKFGVLFNDDKCANLFEALVGTLKAAKRRKIITYSGELLLQGVHDDTDIVL 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Match: A0A6I9RHF6_ELAGV (costars family protein n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RHF6_ELAGV)

HSP 1 Score: 87.0 bits (214), Expect = 7.890e-21
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 LVEEVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVITYAAPLLLKGAHDDVDIVIPPTAS 222
            L EE+RRLG++++DGS  VKFG LF+D+     FEAL GTL+AAKKR V+TY   LLL+G HD+V+I + P+A+
Sbjct:   10 LKEEIRRLGQQQQDGSCKVKFGVLFNDDRCANIFEALVGTLRAAKKRKVVTYDGELLLQGVHDNVEITLLPSAA 83
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BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Match: ABRAL_BOVIN (Costars family protein ABRACL n=11 Tax=Pecora TaxID=35500 RepID=ABRAL_BOVIN)

HSP 1 Score: 86.7 bits (213), Expect = 9.780e-21
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 LVEEVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVITYAAPLLLKGAHDDVDIVI 207
            LVEE+ RLG +  DG ++VKFG LF D+     FEAL GTLKAAK+R +ITY+  LLL+G HDDVDI++
Sbjct:   10 LVEEIHRLGSKNADGKLSVKFGVLFQDDKCANLFEALVGTLKAAKRRKIITYSGELLLQGVHDDVDIIL 78
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76187.17968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K7VCP3_EUDEL3.510e-2163.77Costars family protein ABRACL (Fragment) n=11 Tax=... [more]
A0A8B9EVQ5_9PSIT3.810e-2163.77Costars family protein ABRACL n=2 Tax=Psittaciform... [more]
ABRAL_MOUSE4.850e-2160.87Costars family protein ABRACL n=4 Tax=Mus TaxID=86... [more]
UPI00015498266.200e-2160.87MCG7517, isoform CRA_a n=2 Tax=Murinae TaxID=39107... [more]
A0A5B8MVS8_9CHLO6.550e-2157.58Costars domain-containing protein n=1 Tax=Chloropi... [more]
ABRAL_COTCO6.890e-2162.32Costars family protein ABRACL n=149 Tax=Aves TaxID... [more]
E9QMV2_MOUSE6.890e-2160.87Costars family protein ABRACL n=16 Tax=Eutheria Ta... [more]
A0A822EHA4_9NEOB6.890e-2160.87Costars family protein ABRACL n=5 Tax=Hyloidea Tax... [more]
A0A6I9RHF6_ELAGV7.890e-2156.76costars family protein n=2 Tax=Arecaceae TaxID=471... [more]
ABRAL_BOVIN9.780e-2159.42Costars family protein ABRACL n=11 Tax=Pecora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76187contigM-pyrifera_M_contig76187:9..236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score88.2
Seed ortholog evalue1.8e-15
Seed eggNOG ortholog10116.ENSRNOP00000016618
Preferred nameABRACL
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Costars
EggNOG OGs35QMI@314146,3A6NJ@33154,3BSNM@33208,3D97M@33213,3JI2Z@40674,48G0K@7711,49CTJ@7742,4Q62W@9989,KOG3376@1,KOG3376@2759
COG Functional cat.S
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.1736016-CDS-M-pyrifera_M_contig76187:8..2361622816661.1736016-CDS-M-pyrifera_M_contig76187:8..236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76187 9..236 +
1692278104.5733376-CDS-M-pyrifera_M_contig76187:8..2361692278104.5733376-CDS-M-pyrifera_M_contig76187:8..236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76187 9..236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76187.17968.1prot_M-pyrifera_M_contig76187.17968.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76187 9..236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76187.17968.1

>prot_M-pyrifera_M_contig76187.17968.1 ID=prot_M-pyrifera_M_contig76187.17968.1|Name=mRNA_M-pyrifera_M_contig76187.17968.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
LVEEVRRLGEEREDGSVAVKFGKLFDDEDVTQYFEALAGTLKAAKKRGVI
TYAAPLLLKGAHDDVDIVIPPTASE*
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mRNA from alignment at M-pyrifera_M_contig76187:9..236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76187.17968.1 ID=mRNA_M-pyrifera_M_contig76187.17968.1|Name=mRNA_M-pyrifera_M_contig76187.17968.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig76187:9..236+ (Macrocystis pyrifera P11B4 male)
CTTGTGGAGGAGGTGCGTCGGCTTGGGGAGGAGAGGGAGGATGGGTCGGT
AGCTGTCAAGTTCGGGAAGCTGTTCGACGACGAAGATGTCACCCAGTACT
TCGAGGCGCTCGCTGGAACGCTCAAGGCGGCCAAGAAGCGGGGCGTTATC
ACCTACGCAGCCCCCCTCTTGCTCAAAGGAGCCCACGATGACGTCGACAT
CGTCATCCCTCCAACAGCAAGCGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76187:9..236+

>mRNA_M-pyrifera_M_contig76187.17968.1 ID=mRNA_M-pyrifera_M_contig76187.17968.1|Name=mRNA_M-pyrifera_M_contig76187.17968.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig76187:9..236+ (Macrocystis pyrifera P11B4 male)
CTTGTGGAGGAGGTGCGTCGGCTTGGGGAGGAGAGGGAGGATGGGTCGGT
AGCTGTCAAGTTCGGGAAGCTGTTCGACGACGAAGATGTCACCCAGTACT
TCGAGGCGCTCGCTGGAACGCTCAAGGCGGCCAAGAAGCGGGGCGTTATC
ACCTACGCAGCCCCCCTCTTGCTCAAAGGAGCCCACGATGACGTCGACAT
CGTCATCCCTCCAACAGCAAGCGAATAGCTTGTGGAGGAGGTGCGTCGGC
TTGGGGAGGAGAGGGAGGATGGGTCGGTAGCTGTCAAGTTCGGGAAGCTG
TTCGACGACGAAGATGTCACCCAGTACTTCGAGGCGCTCGCTGGAACGCT
CAAGGCGGCCAAGAAGCGGGGCGTTATCACCTACGCAGCCCCCCTCTTGC
TCAAAGGAGCCCACGATGACGTCGACATCGTCATCCCTCCAACAGCAAGC
GAATAG
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