mRNA_M-pyrifera_M_contig761.17948.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig761.17948.1
Unique NamemRNA_M-pyrifera_M_contig761.17948.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig761.17948.1 vs. uniprot
Match: A0A6G6CDJ0_SACJA (Sulfotransferase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G6CDJ0_SACJA)

HSP 1 Score: 120 bits (302), Expect = 9.060e-31
Identity = 61/83 (73.49%), Postives = 68/83 (81.93%), Query Frame = 2 
Query:    2 RYLQAGVIEGRRKSRQLNADPNSTFKWIMEVRSKSSGPDEQKEAIPDRDYLNGLVAASATNTDGQEGNIAFAKTHQTGSTSMA 250
            R+L+AG  EGRRKSR+L ADP+ T KWIME RSK +G DEQ +AIPDRDYLNGLV AS   TD QEGNIAFA T+QTGSTSMA
Sbjct:   62 RFLRAGAKEGRRKSRELYADPDPTVKWIMEGRSKQNGVDEQSQAIPDRDYLNGLVEASVATTDHQEGNIAFANTYQTGSTSMA 144
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BLAST of mRNA_M-pyrifera_M_contig761.17948.1 vs. uniprot
Match: A0A6H5JMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW5_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.820e-5
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 2 
Query:  128 EAIPDRDYLNGLVAASATNTDGQEGNIAFAKTHQTGSTSMA 250
            +A   RDYLNGLVAASA N D Q  N+A  KTH+TGST++A
Sbjct:  130 DAAGQRDYLNGLVAASAENKDEQLSNLALFKTHKTGSTTLA 170
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig761.17948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6G6CDJ0_SACJA9.060e-3173.49Sulfotransferase n=1 Tax=Saccharina japonica TaxID... [more]
A0A6H5JMW5_9PHAE2.820e-563.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig761contigM-pyrifera_M_contig761:12252..18025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size254
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig761.17948.1prot_M-pyrifera_M_contig761.17948.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig761 12252..18024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.054884-CDS-M-pyrifera_M_contig761:12251..122801622816660.054884-CDS-M-pyrifera_M_contig761:12251..12280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig761 12252..12280 +
1692278103.9837961-CDS-M-pyrifera_M_contig761:12251..122801692278103.9837961-CDS-M-pyrifera_M_contig761:12251..12280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig761 12252..12280 +
1622816660.067855-CDS-M-pyrifera_M_contig761:16644..167071622816660.067855-CDS-M-pyrifera_M_contig761:16644..16707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig761 16645..16707 +
1692278103.9973845-CDS-M-pyrifera_M_contig761:16644..167071692278103.9973845-CDS-M-pyrifera_M_contig761:16644..16707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig761 16645..16707 +
1622816660.0807846-CDS-M-pyrifera_M_contig761:17558..176621622816660.0807846-CDS-M-pyrifera_M_contig761:17558..17662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig761 17559..17662 +
1692278104.00907-CDS-M-pyrifera_M_contig761:17558..176621692278104.00907-CDS-M-pyrifera_M_contig761:17558..17662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig761 17559..17662 +
1622816660.0921607-CDS-M-pyrifera_M_contig761:17968..180241622816660.0921607-CDS-M-pyrifera_M_contig761:17968..18024Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig761 17969..18024 +
1692278104.021474-CDS-M-pyrifera_M_contig761:17968..180241692278104.021474-CDS-M-pyrifera_M_contig761:17968..18024Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig761 17969..18024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig761.17948.1

>prot_M-pyrifera_M_contig761.17948.1 ID=prot_M-pyrifera_M_contig761.17948.1|Name=mRNA_M-pyrifera_M_contig761.17948.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
EIFTSRRHRRTTKISSTKRRSELDIQMDHGSPIEVKRTGRAEGGDTRQGL
PERIGSSLSNKHGRPGGQHCFCQDPPDGIHIYGG
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mRNA from alignment at M-pyrifera_M_contig761:12252..18025+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig761.17948.1 ID=mRNA_M-pyrifera_M_contig761.17948.1|Name=mRNA_M-pyrifera_M_contig761.17948.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5774bp|location=Sequence derived from alignment at M-pyrifera_M_contig761:12252..18025+ (Macrocystis pyrifera P11B4 male)
GAGATATTTACAAGCAGGCGTCATAGAAGGTGCGATCAACACCTGATACG
TGACCTACCACAGCTTGGGGGCGTGCAAGCTTGTCTCGACTATTGTTGCG
TTTGCCATCCGACAAGTTGCAGCATGAGCTTCAGCGTTGACTGTTCATGA
ACAATTCCAGAAATAAGAGGAAACCGAACAAGTAAATCTACAGCAGCAGC
AGATGCACGAAGGCTGTAGCTGCCTGATGTATGTATGTGTGTGTTCTTCG
CGTTTGAACAGTTATTTCTACATGTCCGTCGACACCCAGCACACCCATTG
TCCGCGCCGATTCTTCAATCCTAAAGAGATACGAGCTCTGTGGTCACGAA
ACTACGACACAGAGATGGACCGCACTGAAATGCAGCAAGCAAGTAGACAA
TGAAATGCCATGTTCATCGTGTTCTTACCTTATCTAAATCTGGATTGCCG
GCGTGTGTTTGTTGTGCCTTTCGTATTAATGATGTGTGTTCTTCATATTA
AACCGTTCCTTCTACCCGTCGACATCCGGCGCAACCAGCAGTAGTAGCAT
CTCTTATGTCGTAGTTTTGCGACCATGGAGCTCGTATCTCTCAAGGACGA
ATAATCGGCAAGGACGCTGGGTGCCTCGACGGGTAGGAGGAACGGTTTAA
TGTGAAGAACACGAACAAACTGGATACGCACGACATACGCAGTCTAGCAT
GCGTTGAAAAAGAAAAATCCCCCGAAAAAAAACAAAGGAAAAAATCCGAG
CAAGACCAAAATTGTCGTGCCCCCCCGGAGGAGGTATGACAGTAGTACTA
AACGAGCAAAATAACACAAAAACATACTACTGTAATACGAAGTAAACCTA
AGAACGAAAGGAAATGGCAGGCAAACGAAGGCATAACAAAAGCACCCTCC
GGGCAGCCCCACGGTACGAGTACTAGCCTAGACAGGTTTCACCTACTACT
AATAGTCGGACACGGAACGAAATAAAGTAAATGACTAAGAATTGTAAAGA
AATAAATGTGTACAAGTGCCAGGTAGCTATTATTAATAATAAAACAAATG
AAGAAAAATTGAGCGTACATCACGATACACCTTGTGGGATGGCAAAACGT
CAAGACCAATTAATGCCCGCGATTGTAGTATCGCTGTCGTGCCCCCCCCC
TCGGGGAAACTGCGACGGACAACACATCAAAGGAAACAAAAGCTATACAG
GAACAACCACCAAGCCGGGCAGGGTATCTTTAATATCATAAGGAAAACAA
CGAAACGAAAAAAGAAAAGAAAAGGCAACGAAAACACAGCATCGTCACAT
TCGATTTAACCGCAGAGGTTTGCGGTACGAGTAGCCTGGGAAGGTTGTAC
CTACTAGATGGTCTGGTACCTTGCTGCCCTGTCGGCCGTCTCCTCCCTGC
TTTAGTCGACCGCGGTTTCCTTACGACTTTTGCCACCCCCCCCTCCCATT
TCCTTGGACACCACCCACAACGAAACGAATGCGTGGCGCTGTCTACTCAG
ATCCGCCTCATCCTTACGAACCATTCGGCTGCTTCGAGGAACTCCCGGTA
CCACTCGTCCGCCTTGTTGGCTCAATGGTCCACACGGCGGTCTCTACTTC
AAACACCAACGGGAAGTGTTCCGTTGACCCCTTGGTGGCTCGAAACATCC
TGAGGTCTTCAGCTAGGCGTCTAGGCCAAGTCTCTGGCTGTCCGGCCGAT
GTCCGCCCCCCCCGTTTGGTCATCGTCGCGATCACCCGACTGGGTAATCG
CCCGCTGCTGTGTCGCGCCACCCCCCCCGCAAAGAAGAGCCGCCCCTTAC
GGATGGTTGTTTCGATTGTCTCGCATCGTCTCTCCTTGAAGGCCTTCGAG
TACGAGGTCGGCACGCCGTCAGCGCTGGAAGCCAATGAACCGCAGGAGGA
CTTAGTGGGGCACCGTTTGGAGCTTGGCGAAGTGTACTGGTCTGAGAGTC
CACGATTCACATCCGTACAGCAGGGTCGCAATCACATCGGCCTTCGACAT
GCGGACTTTCAGACTATGTGGGGCCTTCTGCTTATCGTACGACTCCGGGC
CGAACCTTGTGAGGCATGCCCGCATGAGACGGGTTCGTCGTTCGATTTCG
AGCGAGAGTTCAGCGTTGTCGTGGATAACGCCGCCGAGGTATAAGACTTG
GTTCGTCTGTCTATACCTCTGGCTAGCTGCTTGAATCACGAGCGGTGGAG
CAGGGGATGTCTGGTCCCGTGTTCATAGCAGCATCGTCTCCGTATTACTA
TCCGATACTGTGAAGCCTGCTACTTCGAAGACAGTCACGATGACTGTCAT
AATTTTCGTGAGTCCCTTCGCCGATTTCGAGACAATTTCTGCGTCATCGG
CGTACAACATGCCCCTCACCGCCCTTCGCACCCATGCCAATGGCCCCTCT
TTTCTGACCACCACATCCTCGTCGAGGTAGACCAAATCCCTAACGATATA
TTCGTCCTCGCTGAAACTTACTAGAACAGCGTGTTTTGCCGCGCGAAGAA
CACGTTGAACGGCAACGGTGACAGCAAACAGGCTTGTCGCAGCCCCCGCG
TGACATGAAGAATGTTCTGCGGGCTCGCCCATCATCTGTACGCACGCAAA
CCTGCACGCCGTCGTCGTGAAACTGGCGAATGACTGTAAACATCTCAGCT
GGCACACCAAAGCTTGTGAGTACCTCCCACAGCAGCTCTCGGTCGACAGA
GTCGTACGCTTTCTGCAGGTCAATGAAGAATATTTACAAGGGGATTTTAA
TCTCAAGACTGAGTTCTTGCAGTCGTTGCACGACGATCTTCCTCCGTTCC
ATATCAATCCTTCCCAGCCCATGTCTTCCCAATTCAACCGATTGCACCCA
TGGTTAACTTGATGGCCCTCTTCCCCATCCCTTCTTTACAAACGTGCCAA
CGATGCAATACCTCCCCACAAACCCCAGATTCCCTTCGTTCCATCTCCCA
CTTGAGAATACTTCAAGTTCATTATCGTTTTTTGTATGTACGAACCTACG
AGGCGTCTACATGTTTTTTTTTAATATTTCCCCGTCATATCGAACTCCTG
CCGACACCCTGGCGGACCCGTTGTAGTATGCAATGAAAATGCTGGGATCG
TGGCAAAACAGCCCTACTTTATTTACGTCCTCGTTTAAAAAACACGATGG
GATGGGTGAGAAACGTCCGACCCGCGTCCTTTACATGAAGACCCAACAGA
AGTATCGAAATTGTTTGGCTTTTACCCGGGATCCTCTTCTCTTACGCTGG
GGGCATGTCCAAACATAATCAAGATCGTAAATCGAAAATCTAAATGCTTT
CGTTTTCGAGAGTATATTAGACGACGTGTCCAAACATAACCGAAATTGAA
AATACGTACCCAGGCGAAAAACAACGGAAAGCACAACCTACGGGTCGTTC
ATAGCTACCAGGTATATACACATGCCGATCATCTAGTGCTTGGCAACACA
GATCTACCAGAGAAGCAGGCAGATGCGACCACAACTCGATCCTAGGAAGT
TTTTGGGCCTTCCATGGATTGTGACACGTCTAAGGTTGACGCCTCGGGAT
CAAACTTGACTTTTTTCTGAGAACGAAATCCCAACCCCATTCTCGAACTC
AACATTCTGAAGTAGTCTCAAACTCTCTTCGCTTTGGCTCGAACTCCGGG
AAACAAAGGCACGAACTGTGGATTCCAAGCTGTGTGCGTCGGTCCTGATG
TGATACTTTGACGTGGCTGCGCTGACCAGTAGAGCACGCTGAATTGTTCC
AGTTCGTGTTTTCGATTGGCCTTTCGATCTTCAGCCGTCAACGTCATGAT
TTTGGCTTGTAGGTTGGAATTTGTGCATAGGGCAACATGCTTGTGCCAGC
GACCAATCACCGCCCTTGCTTTTTTCATTCCGATTATCAATTCTGTTTGG
ACATGCTCTGAGCGTGCTGAATGCAAAATCAAGACTAACAAGCGCGGAAT
AGCCTGTTGTGTTGGCATCCCGCAAAGATACTTGTGAATTTTAAGACTCC
TGAATTTCAAGAGTACCCTGCAGACTCTAGCCCGTACCGTATAACTTATT
CGTGGCGTCAGTGCCTTGCGGTAGGCGAGCTTGCGTTAGAGGATTGCATC
GGTGGTATACGAACGGTTTGTCATTGCCACGGAGGTTCAGGGTTAAACTA
CACGGGACGGCCAGCGCCGTCGAGAAACGTCACGTTTTGCAAGTTGACAA
AACGCTTCCGTCCGATACCGAATGCGTGTTGACATTGAAGAATTTGCTTC
GAAGGATCACATTTATATCATACCAGGTATCGAACATCGGCGGCAGAGTT
GCTATTAATAGCTAGTATCTGCTGCTCCAATTACTTGCAAGCAACCCTAA
CTCTGAGATGTGATGCCCCACCCAATGTTGACGCCGTTCTCAGGACGACG
AAAATCTCGTCAACTAAACGCCGATCCGAACTCGACATTCAAATGGATCA
TGGAAGGTAAGCCCACTGTGCGCCTACACACTGATGTATTCATATCGCAG
ATAATGAAACGCATGCAATATGCTAGGGGAGTGCACCTGGATTGTTTCAT
GAGGCTTCTCACTTAGAGAGCTCTGCTGCATATCACTCCGAAAACGGTTC
CTGGAAAAAGCTCACGCTTAGCCCGATGAACACTACCCACGACGGTATGG
GTCTATATTCTGTAACAATAATTGAAATGATTGGCGAACCAAAACCATAA
GGCAAGCTTCACAAGGCGCATAGTTCCATTGGTCAGAGTTCAGGCATGCC
CGATCGCAGCACGCGTCGAACTACGCACTCCTGGCTGCTGTGTTGGTATC
CCAGGCGCTCGCGCGCTATACTTGGCTATTCACATTCCGCGTTCAGTCAC
GTTTCACTCGGTCAGCACGCTTGACACAGAGTGGACCCTGCGTAATACAT
AGAGGTAGACTTTAAATTGCAACGTTTCGTGTGCCTACGTGGGGGGTGAA
ATTTAATTACATCACACCGACTCGAGTCATTCATTAATTTATTTCACACC
ACCTTTCCGTCGACAGGAACGCCCATATACTTTGTCTCAGCGACTCGAAA
CCCTAATCTGCACCGTTGGACGGTTTCCCACGGCCCCTCCCAATCATTCA
GAGTGCTTTCGTTTATGTCGTGCATGTAGAGTAGGTGAACTAGAGTGGTC
AAAAGTGGGGTGTAAGCATGTGCATCTTTTTGACGTGCTGACGTGAGAGT
ATATCGTGTGCTTGCTGTAGGAGGTGAAAACTCTTTTTTCAACACAGACT
CAAGCCATTATAGAGTGTAAATATGCTGCATGTCTGTTCTTCCGTTCGTT
GCCGAAGTCCGATCGAAGTCAAGCGGACCGGACGAGCAGAAGGAGGCGAT
ACCCGACAGGGACTACCTGAACGGATTGGTAGCAGCCTCAGCAACAAACA
CGGACGGCCAGGTATTGGAAGTGCAAGCAGCCTCTAAAACAATGGACAAT
TTGGAGTGTAGAACGAGGGGATACGTTTGGCCGTGAGATGGAACCCGGGG
TATCACTCGCGAAGAAGGCGCGTGCATGTGTTTGTTCCGTGTGGCACCCT
CTCGATAGCTGCCTGGCTGCGATATTCCAACACGGTAGAACTCCATTCGC
GAATATATTGACTGCTGCAGTATGGATGGATCTCGCTAGCCTGATGTACA
CACCTTGTTGTCCATGGCGTCACTGAAATACGACTGCTCCCTTCCCCGCG
TTTGGTCCCCTGTTTAGGAGGGCAACATTGCTTTTGCCAAGACCCACCAG
ACGGGATCCACATCTATGGCGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig761:12252..18025+

>mRNA_M-pyrifera_M_contig761.17948.1 ID=mRNA_M-pyrifera_M_contig761.17948.1|Name=mRNA_M-pyrifera_M_contig761.17948.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig761:12252..18025+ (Macrocystis pyrifera P11B4 male)
GAGATATTTACAAGCAGGCGTCATAGAAGGAGATATTTACAAGCAGGCGT
CATAGAAGGACGACGAAAATCTCGTCAACTAAACGCCGATCCGAACTCGA
CATTCAAATGGATCATGGAAGGACGACGAAAATCTCGTCAACTAAACGCC
GATCCGAACTCGACATTCAAATGGATCATGGAAGTCCGATCGAAGTCAAG
CGGACCGGACGAGCAGAAGGAGGCGATACCCGACAGGGACTACCTGAACG
GATTGGTAGCAGCCTCAGCAACAAACACGGACGGCCAGTCCGATCGAAGT
CAAGCGGACCGGACGAGCAGAAGGAGGCGATACCCGACAGGGACTACCTG
AACGGATTGGTAGCAGCCTCAGCAACAAACACGGACGGCCAGGAGGGCAA
CATTGCTTTTGCCAAGACCCACCAGACGGGATCCACATCTATGGCGGCGA
GGGCAACATTGCTTTTGCCAAGACCCACCAGACGGGATCCACATCTATGG
CGGC
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