mRNA_M-pyrifera_M_contig76093.17947.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76093.17947.1
Unique NamemRNA_M-pyrifera_M_contig76093.17947.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match: D7FYI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI2_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 8.580e-30
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
            + S GYVLLLSSKTKQWAADFKLNS ATAVTF+PDS+Y+LA+G D DVYKFD+RSRRCVLRFFNE
Sbjct:  141 IGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYVLASGADADVYKFDIRSRRCVLRFFNE 205
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BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match: A0A6H5KQH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 8.400e-29
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
            + S GYVLLLSSKTKQWAADFKLNS ATAVTF+PDS+Y+LA+G D DVYKFD+RSRRCVLRFFNE
Sbjct:  373 IGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYVLASGADADVYKFDIRSRRCVLRFFNE 437
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BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match: A0A835Z2C0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2C0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.550e-21
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    4 ASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
            AS+GY++L+S+KTKQWAADFKLN    A+ F+PDS+YILA+G D +VYKFDVR  RCV R +NE
Sbjct:  192 ASAGYIMLVSAKTKQWAADFKLNCSVEALVFSPDSRYILASGRDAEVYKFDVRHSRCVQRMYNE 255
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BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match: A0A7S1CWG3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWG3_CYCTE)

HSP 1 Score: 83.6 bits (205), Expect = 1.770e-17
Identity = 35/65 (53.85%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
            + + GY++L+ +K+KQW AD K+N    AV FTPDS+ +L++G DGDVY++D+R+RRCV RF NE
Sbjct:  153 VGNDGYIILVDAKSKQWMADLKMNGSVRAVAFTPDSECLLSSGSDGDVYRWDLRTRRCVERFSNE 217
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BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match: B5Y3P6_PHATC (Anthranilate synthase. anthranilate synthetase. chorismate lyase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3P6_PHATC)

HSP 1 Score: 80.9 bits (198), Expect = 2.700e-16
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
            + + GY++L  +  KQW AD K++    A+TFTPD +YILA+G DG++Y++D+R+RRCV RF N+
Sbjct:  238 VGNDGYIILFDAHAKQWIADLKISGSVRAITFTPDGEYILASGSDGEIYRWDLRTRRCVERFTNQ 302
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BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match: UPI0009E437CB (U3 small nucleolar RNA-associated protein 18 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E437CB)

HSP 1 Score: 78.2 bits (191), Expect = 1.160e-15
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNEVCM 204
            + ++GY++LLSSKTKQW  + K+NS  +AVTF  D   +  AGGDG+VY +D+ +RRCV +F +E C+
Sbjct:  119 VGTNGYLILLSSKTKQWIGNLKMNSSVSAVTFNADGSRMFTAGGDGEVYVWDMNTRRCVHKFRDEGCL 186
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BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match: A0A7S3QBK5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBK5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.920e-15
Identity = 30/65 (46.15%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
            + + GY++L+ +K+K W ADFK+N  A AV+F+P   +I+++G DGDVY++D+RS++CV +F N+
Sbjct:  425 IGNDGYIILVEAKSKMWVADFKMNGSARAVSFSPCGDFIISSGSDGDVYRWDLRSKKCVDKFQNQ 489
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BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match: W7T4E2_9STRA (U3 small nucleolar rna-associated protein 18 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4E2_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.920e-15
Identity = 31/61 (50.82%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:   13 GYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
            GYV+L+ +++KQWA +FK+N  A A+ F+ D ++++A+GGD  VY++D+RSRRC+ RF NE
Sbjct:  414 GYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNE 474
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BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match: A0A7S2GVY7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVY7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.050e-14
Identity = 30/64 (46.88%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    4 ASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
            A++GYV+L  ++TKQW+ +FK+N  A +++++P S+Y+LA+GGD +VY +D+R  RCV  + NE
Sbjct:  304 ANNGYVVLADARTKQWSQEFKINGTARSLSWSPCSRYLLASGGDAEVYTYDLRRSRCVSHWLNE 367
[Close]
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match: A0A0L0H5M5_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H5M5_SPIPD)

HSP 1 Score: 73.6 bits (179), Expect = 1.150e-13
Identity = 28/68 (41.18%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNEVCM 204
            L   G+++L+S  TKQW A  K+N   TA+ F+ D K++ + GGDG+VY++D+ SR+C+ +F+++ C+
Sbjct:  432 LGRDGHIILVSKDTKQWVATMKMNGSVTAIDFSKDGKFLYSFGGDGEVYQWDLGSRKCIHKFYDDGCV 499
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI2_ECTSI8.580e-3083.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQH1_9PHAE8.400e-2983.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z2C0_9STRA5.550e-2165.63WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S1CWG3_CYCTE1.770e-1753.85Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B5Y3P6_PHATC2.700e-1649.23Anthranilate synthase. anthranilate synthetase. ch... [more]
UPI0009E437CB1.160e-1550.00U3 small nucleolar RNA-associated protein 18 homol... [more]
A0A7S3QBK5_9STRA6.920e-1546.15Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
W7T4E2_9STRA6.920e-1550.82U3 small nucleolar rna-associated protein 18 n=2 T... [more]
A0A7S2GVY7_9STRA6.050e-1446.88Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0L0H5M5_SPIPD1.150e-1341.18Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76093contigM-pyrifera_M_contig76093:329..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.5e-24
Seed eggNOG ortholog2880.D7FYI2
Preferred nameUTP18
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11422,ko:K14553
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko03008,map00310,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000462,GO:0001674,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007405,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016072,GO:0017145,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022613,GO:0030154,GO:0030490,GO:0030532,GO:0030684,GO:0030686,GO:0031090,GO:0031461,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042078,GO:0042254,GO:0042274,GO:0042585,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0046483,GO:0048132,GO:0048468,GO:0048477,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051301,GO:0051704,GO:0061351,GO:0070013,GO:0071704,GO:0071840,GO:0072089,GO:0080008,GO:0090304,GO:0098722,GO:0098728,GO:0120114,GO:1901360,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG2055@1,KOG2055@2759
EC2.1.1.43
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.0158548-CDS-M-pyrifera_M_contig76093:328..5321622816660.0158548-CDS-M-pyrifera_M_contig76093:328..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76093 329..532 -
1692278103.9724436-CDS-M-pyrifera_M_contig76093:328..5321692278103.9724436-CDS-M-pyrifera_M_contig76093:328..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76093 329..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76093.17947.1prot_M-pyrifera_M_contig76093.17947.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76093 329..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76093.17947.1

>prot_M-pyrifera_M_contig76093.17947.1 ID=prot_M-pyrifera_M_contig76093.17947.1|Name=mRNA_M-pyrifera_M_contig76093.17947.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYK
FDVRSRRCVLRFFNEVCM
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mRNA from alignment at M-pyrifera_M_contig76093:329..532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76093.17947.1 ID=mRNA_M-pyrifera_M_contig76093.17947.1|Name=mRNA_M-pyrifera_M_contig76093.17947.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig76093:329..532- (Macrocystis pyrifera P11B4 male)
CTCGCCTCTTCAGGCTACGTCCTCCTTCTGTCGAGCAAGACCAAGCAGTG
GGCGGCCGACTTCAAGCTTAACTCGCCAGCTACTGCGGTGACCTTCACAC
CCGACAGCAAGTACATCTTGGCAGCAGGCGGCGACGGCGACGTATACAAG
TTCGACGTAAGGTCCCGCCGCTGCGTGCTTCGGTTCTTCAACGAGGTATG
CATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76093:329..532-

>mRNA_M-pyrifera_M_contig76093.17947.1 ID=mRNA_M-pyrifera_M_contig76093.17947.1|Name=mRNA_M-pyrifera_M_contig76093.17947.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig76093:329..532- (Macrocystis pyrifera P11B4 male)
CTCGCCTCTTCAGGCTACGTCCTCCTTCTGTCGAGCAAGACCAAGCAGTG
GGCGGCCGACTTCAAGCTTAACTCGCCAGCTACTGCGGTGACCTTCACAC
CCGACAGCAAGTACATCTTGGCAGCAGGCGGCGACGGCGACGTATACAAG
TTCGACGTAAGGTCCCGCCGCTGCGTGCTTCGGTTCTTCAACGAGGTATG
CATGCTCGCCTCTTCAGGCTACGTCCTCCTTCTGTCGAGCAAGACCAAGC
AGTGGGCGGCCGACTTCAAGCTTAACTCGCCAGCTACTGCGGTGACCTTC
ACACCCGACAGCAAGTACATCTTGGCAGCAGGCGGCGACGGCGACGTATA
CAAGTTCGACGTAAGGTCCCGCCGCTGCGTGCTTCGGTTCTTCAACGAGG
TATGCATG
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