mRNA_M-pyrifera_M_contig76054.17942.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76054.17942.1
Unique NamemRNA_M-pyrifera_M_contig76054.17942.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Match: A0A2R5GIZ8_9STRA (RuvB-like helicase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIZ8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.930e-45
Identity = 74/115 (64.35%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTRLADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKYLVEFSKEFLFHEMDE 345
            PHGIPIDLLDRL+IITT PY   ++R+IL+IRCEEEDVEM+++A  +LTR+ADE++LRYAMHMIM+ASL+C KR GTEV +EDI + + LF D++RST +L+E+  E+LFHE+D+
Sbjct:  345 PHGIPIDLLDRLIIITTSPYSGKEIRKILDIRCEEEDVEMSDDARELLTRIADETSLRYAMHMIMSASLVCSKRRGTEVEIEDIKKVYSLFIDLKRSTNFLLEYQSEYLFHEVDD 459
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BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Match: H3G952_PHYRM (RuvB-like helicase n=39 Tax=Oomycota TaxID=4762 RepID=H3G952_PHYRM)

HSP 1 Score: 159 bits (401), Expect = 1.860e-44
Identity = 74/115 (64.35%), Postives = 100/115 (86.96%), Query Frame = 1 
Query:    1 PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTRLADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKYLVEFSKEFLFHEMDE 345
            PHGIPIDLLDRL+II T+PY  +++R+IL IRCEEEDVEMTEEA  +LTR+A E++LRYA+HMI+TASL+C KR GTEV + DI R + LF+D++RST++L+E+ +EF+FHE+D+
Sbjct:  329 PHGIPIDLLDRLMIIPTKPYSESEMRKILIIRCEEEDVEMTEEAKDLLTRIAVETSLRYAIHMIITASLVCLKRKGTEVDVPDIKRVYSLFADVKRSTQFLMEYQREFMFHEVDD 443
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BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Match: A0A662WIM4_9STRA (RuvB-like helicase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WIM4_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.960e-44
Identity = 72/115 (62.61%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTRLADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKYLVEFSKEFLFHEMDE 345
            PHGIPIDLLDRL+II T+ Y  +++R+IL IRCEEEDVEMTEEA  +LTR+A E++LRYA+HMI+ ASL+C KR GTEV + DI R + LF+D++RST++L+E+ +EF+FHE+D+
Sbjct:  210 PHGIPIDLLDRLMIIPTKSYSESEMRKILTIRCEEEDVEMTEEAKDLLTRIAVETSLRYAIHMIIAASLVCAKRKGTEVDVPDIKRVYSLFADVKRSTQFLMEYQREFMFHEVDD 324
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BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Match: A0A6G0LPF0_9STRA (DNA helicase n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LPF0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 6.130e-43
Identity = 75/115 (65.22%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTRLADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKYLVEFSKEFLFHEMDE 345
            PHGIPIDLLDRL+II T+PY  A++R+IL IRCEEEDVEMTEEA  +LTR+A E++LRYA+ MI+TASL+C KR GTEV + DI R + LF+D++RST++L+E+ +EF+FHEMD+
Sbjct: 1083 PHGIPIDLLDRLMIIPTKPYSEAEMRKILTIRCEEEDVEMTEEAKDLLTRIAVETSLRYAIQMIITASLVCLKRKGTEVDVPDIKRVYSLFADVKRSTQFLMEYQREFMFHEMDD 1197
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BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Match: A0A024U2S4_9STRA (RuvB-like helicase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U2S4_9STRA)

HSP 1 Score: 155 bits (391), Expect = 8.640e-43
Identity = 72/115 (62.61%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTRLADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKYLVEFSKEFLFHEMDE 345
            PHGIPIDLLDRL+II+T+PY  +D+R+IL IRCEEEDVEMT++A  +LTR+A E++LRYA+H+IMTASL+C KR GTEV + DI + + LF D++RST++L+E+  EF+F+E+DE
Sbjct:  358 PHGIPIDLLDRLMIISTKPYSESDVRKILNIRCEEEDVEMTDDAKDLLTRIAMETSLRYAIHVIMTASLVCTKRKGTEVDVADIKKVYSLFVDVKRSTQFLMEYQHEFMFNEIDE 472
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BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Match: A0A662X6K8_9STRA (DNA helicase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6K8_9STRA)

HSP 1 Score: 155 bits (393), Expect = 9.800e-42
Identity = 73/115 (63.48%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTRLADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKYLVEFSKEFLFHEMDE 345
            PHGIPIDLLDRLLII T+ Y  +++R+IL IRCEEEDVEMTEEA  +LTR+A E++LRYA+HMI+ ASL+C KR GTEV + DI R + LF+D++RST++L+E+ +EF+FHE+D+
Sbjct:  862 PHGIPIDLLDRLLIIPTKSYSESEMRKILTIRCEEEDVEMTEEAKDLLTRIAVETSLRYAIHMIIAASLVCAKRKGTEVDVPDIKRVYSLFADVKRSTQFLMEYQREFMFHEVDD 976
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BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Match: A0A7S2NR11_9EUKA (RuvB-like helicase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NR11_9EUKA)

HSP 1 Score: 144 bits (362), Expect = 1.200e-41
Identity = 64/115 (55.65%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:    1 PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTRLADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKYLVEFSKEFLFHEMDE 345
            PHGIPIDLLDRLLII+T PY   +++ IL+IRCEEEDVEMT++++T+LT++  E++LRYA+ +I+ A+L+C KR G EV +EDI + + LF D++RST++L+E+  EF+FHE+ +
Sbjct:   42 PHGIPIDLLDRLLIISTTPYTEKEIKHILKIRCEEEDVEMTDDSLTLLTKIGIETSLRYAIQLIIAAALVCTKRKGVEVEVEDIKKVYTLFVDVKRSTQFLIEYQSEFMFHEIQD 156
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BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Match: A0A2T7PJ44_POMCA (RuvB-like helicase n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PJ44_POMCA)

HSP 1 Score: 143 bits (361), Expect = 1.650e-41
Identity = 66/115 (57.39%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTRLADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKYLVEFSKEFLFHEMDE 345
            PHG+PIDLLDRLLI++T PYE  ++++IL+IRCEEEDV+M+++A+T+LTR+  E++LRYA+ +I TA L+CRKR GTEV ++DI R + LF D  RST++L E+ +EF+F+E+ E
Sbjct:   49 PHGVPIDLLDRLLIVSTSPYEEKEIKQILKIRCEEEDVDMSDDALTVLTRIGMETSLRYAIQLITTAHLVCRKRKGTEVDVDDIKRVYSLFLDESRSTQFLKEYQQEFMFNEVGE 163
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BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Match: A0A418G2Q8_9STRA (RuvB-like helicase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418G2Q8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.700e-41
Identity = 69/115 (60.00%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTRLADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKYLVEFSKEFLFHEMDE 345
            PHGIPIDLLDRL+II+T+PY  +D+R+IL IRCEEEDVEM+++A  +LTR+A E++LRYA+H+IMTASL+C KR GTEV + DI + + LF D++RST++L+E+  EF+F+E+++
Sbjct:  322 PHGIPIDLLDRLMIISTKPYTESDVRKILNIRCEEEDVEMSDDAKDLLTRIAMETSLRYAIHVIMTASLVCTKRKGTEVEVVDIKKVYSLFVDVKRSTQFLMEYQHEFMFNEIED 436
[Close]
BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Match: A0A388K089_CHABU (RuvB-like helicase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K089_CHABU)

HSP 1 Score: 142 bits (358), Expect = 4.700e-41
Identity = 65/113 (57.52%), Postives = 95/113 (84.07%), Query Frame = 1 
Query:    1 PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTRLADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKYLVEFSKEFLFHEM 339
            PHGIPIDLLDRLLII+T PY   ++R+IL+IRCEEEDVEMT++A  +LT++  E+TLRYA+H+I  A+L C+KR GT+V ++DI+R + LF D++RST++L E+ ++F+F+E+
Sbjct:   41 PHGIPIDLLDRLLIISTVPYTEDEIRKILDIRCEEEDVEMTDDAKELLTKIGYETTLRYAIHLITAAALACQKRKGTDVDVQDISRVYSLFVDVKRSTQFLTEYQEQFMFNEV 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76054.17942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5GIZ8_9STRA1.930e-4564.35RuvB-like helicase n=1 Tax=Hondaea fermentalgiana ... [more]
H3G952_PHYRM1.860e-4464.35RuvB-like helicase n=39 Tax=Oomycota TaxID=4762 Re... [more]
A0A662WIM4_9STRA4.960e-4462.61RuvB-like helicase (Fragment) n=1 Tax=Nothophytoph... [more]
A0A6G0LPF0_9STRA6.130e-4365.22DNA helicase n=2 Tax=Phytophthora fragariae TaxID=... [more]
A0A024U2S4_9STRA8.640e-4362.61RuvB-like helicase n=2 Tax=Aphanomyces TaxID=10086... [more]
A0A662X6K8_9STRA9.800e-4263.48DNA helicase n=1 Tax=Nothophytophthora sp. Chile5 ... [more]
A0A7S2NR11_9EUKA1.200e-4155.65RuvB-like helicase n=1 Tax=Haptolina brevifila Tax... [more]
A0A2T7PJ44_POMCA1.650e-4157.39RuvB-like helicase n=1 Tax=Pomacea canaliculata Ta... [more]
A0A418G2Q8_9STRA2.700e-4160.00RuvB-like helicase n=1 Tax=Aphanomyces astaci TaxI... [more]
A0A388K089_CHABU4.700e-4157.52RuvB-like helicase n=1 Tax=Chara braunii TaxID=693... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76054contigM-pyrifera_M_contig76054:3..347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue5.6e-37
Seed eggNOG ortholog4792.ETI47185
KEGG koko:K11338,ko:K11374
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000228,GO:0000491,GO:0000492,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0016462,GO:0016569,GO:0016570,GO:0016573,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031011,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034622,GO:0034708,GO:0035097,GO:0035267,GO:0036211,GO:0042623,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070603,GO:0071103,GO:0071339,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097255,GO:0097346,GO:0140097,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1904949,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.TIP49 C-terminus
EggNOG OGs3Q923@4776,COG1224@1,KOG2680@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03036
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.8276227-CDS-M-pyrifera_M_contig76054:2..3471622816659.8276227-CDS-M-pyrifera_M_contig76054:2..347Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76054 3..347 +
1692278103.9097853-CDS-M-pyrifera_M_contig76054:2..3471692278103.9097853-CDS-M-pyrifera_M_contig76054:2..347Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76054 3..347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76054.17942.1prot_M-pyrifera_M_contig76054.17942.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76054 3..347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76054.17942.1

>prot_M-pyrifera_M_contig76054.17942.1 ID=prot_M-pyrifera_M_contig76054.17942.1|Name=mRNA_M-pyrifera_M_contig76054.17942.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
PHGIPIDLLDRLLIITTRPYEAADLRRILEIRCEEEDVEMTEEAMTILTR
LADESTLRYAMHMIMTASLICRKRGGTEVLLEDITRAFQLFSDIRRSTKY
LVEFSKEFLFHEMDE
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mRNA from alignment at M-pyrifera_M_contig76054:3..347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76054.17942.1 ID=mRNA_M-pyrifera_M_contig76054.17942.1|Name=mRNA_M-pyrifera_M_contig76054.17942.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig76054:3..347+ (Macrocystis pyrifera P11B4 male)
CCACATGGAATTCCTATCGATTTGCTCGATCGTCTTCTCATCATCACCAC
GAGGCCGTATGAAGCAGCAGACTTGCGTCGTATTCTTGAGATTCGGTGTG
AAGAAGAAGATGTGGAAATGACTGAAGAAGCAATGACTATCCTCACCAGA
TTGGCCGATGAATCCACGCTTCGCTATGCTATGCACATGATCATGACAGC
CTCTCTCATCTGCCGAAAGAGGGGAGGTACGGAGGTACTGTTGGAAGACA
TCACCAGAGCATTCCAACTCTTTTCTGACATCCGACGATCCACAAAGTAC
CTTGTCGAATTCTCCAAGGAATTCCTTTTCCACGAAATGGACGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76054:3..347+

>mRNA_M-pyrifera_M_contig76054.17942.1 ID=mRNA_M-pyrifera_M_contig76054.17942.1|Name=mRNA_M-pyrifera_M_contig76054.17942.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig76054:3..347+ (Macrocystis pyrifera P11B4 male)
CCACATGGAATTCCTATCGATTTGCTCGATCGTCTTCTCATCATCACCAC
GAGGCCGTATGAAGCAGCAGACTTGCGTCGTATTCTTGAGATTCGGTGTG
AAGAAGAAGATGTGGAAATGACTGAAGAAGCAATGACTATCCTCACCAGA
TTGGCCGATGAATCCACGCTTCGCTATGCTATGCACATGATCATGACAGC
CTCTCTCATCTGCCGAAAGAGGGGAGGTACGGAGGTACTGTTGGAAGACA
TCACCAGAGCATTCCAACTCTTTTCTGACATCCGACGATCCACAAAGTAC
CTTGTCGAATTCTCCAAGGAATTCCTTTTCCACGAAATGGACGAACCACA
TGGAATTCCTATCGATTTGCTCGATCGTCTTCTCATCATCACCACGAGGC
CGTATGAAGCAGCAGACTTGCGTCGTATTCTTGAGATTCGGTGTGAAGAA
GAAGATGTGGAAATGACTGAAGAAGCAATGACTATCCTCACCAGATTGGC
CGATGAATCCACGCTTCGCTATGCTATGCACATGATCATGACAGCCTCTC
TCATCTGCCGAAAGAGGGGAGGTACGGAGGTACTGTTGGAAGACATCACC
AGAGCATTCCAACTCTTTTCTGACATCCGACGATCCACAAAGTACCTTGT
CGAATTCTCCAAGGAATTCCTTTTCCACGAAATGGACGAA
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