mRNA_M-pyrifera_M_contig76051.17940.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76051.17940.1
Unique NamemRNA_M-pyrifera_M_contig76051.17940.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76051.17940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76051contigM-pyrifera_M_contig76051:355..1038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue4.4e-09
Seed eggNOG ortholog4787.PITG_04005T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium ion binding
EggNOG OGs3Q87N@4776,KOG1217@1,KOG1217@2759
COG Functional cat.Z
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size684
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.7575412-CDS-M-pyrifera_M_contig76051:354..10381622816659.7575412-CDS-M-pyrifera_M_contig76051:354..1038Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76051 355..1038 +
1692278103.8694177-CDS-M-pyrifera_M_contig76051:354..10381692278103.8694177-CDS-M-pyrifera_M_contig76051:354..1038Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76051 355..1038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76051.17940.1prot_M-pyrifera_M_contig76051.17940.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76051 355..1038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76051.17940.1

>prot_M-pyrifera_M_contig76051.17940.1 ID=prot_M-pyrifera_M_contig76051.17940.1|Name=mRNA_M-pyrifera_M_contig76051.17940.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp
LIFTPTNWNTPQYVYFDSIVDDVHSGNFFTATFSHTASSNDPTYSSDSLT
FIPTSGECIASIYDQTQSCTYQCPSGNYIAATTSGNPWCVPCAPGSYCPG
GCSGPILCLPGQAQPLSNATLSDGCDSCEVGTYSASTGASNCTLCPEGYE
CVTQSSLPQICPAGTFAAEGNGTCTACPAGAYASVEGSGRCLECPAGMVC
AEEGTSSPSRWSPGTFSSVGSSSCSPCP
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mRNA from alignment at M-pyrifera_M_contig76051:355..1038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76051.17940.1 ID=mRNA_M-pyrifera_M_contig76051.17940.1|Name=mRNA_M-pyrifera_M_contig76051.17940.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig76051:355..1038+ (Macrocystis pyrifera P11B4 male)
CTAATCTTCACTCCCACAAACTGGAATACGCCACAATATGTGTACTTTGA
TTCCATCGTTGACGACGTTCACAGTGGCAACTTCTTCACCGCCACATTTT
CCCATACCGCCTCCTCCAATGACCCAACATATTCCAGCGATTCACTTACA
TTCATCCCAACTTCCGGTGAGTGCATTGCTTCTATCTACGACCAAACACA
ATCCTGCACATACCAATGTCCTTCAGGCAACTACATTGCAGCAACAACAT
CTGGAAATCCATGGTGTGTTCCATGTGCACCAGGATCATATTGTCCAGGA
GGTTGCAGTGGACCAATCTTGTGTCTTCCAGGACAAGCACAACCACTGTC
CAACGCAACATTGAGCGATGGGTGTGATAGTTGTGAGGTGGGGACATATT
CTGCATCAACAGGAGCATCCAATTGCACCTTGTGTCCTGAAGGATATGAA
TGTGTGACACAATCATCTCTCCCACAAATCTGTCCAGCTGGCACATTTGC
TGCCGAAGGCAATGGGACTTGTACAGCATGTCCAGCAGGAGCGTATGCAT
CGGTGGAAGGGAGTGGAAGGTGTTTGGAATGTCCAGCAGGGATGGTGTGT
GCGGAAGAAGGAACATCCTCACCCTCTCGGTGGTCTCCTGGAACTTTTTC
ATCCGTTGGCTCCTCTTCCTGTAGTCCTTGCCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76051:355..1038+

>mRNA_M-pyrifera_M_contig76051.17940.1 ID=mRNA_M-pyrifera_M_contig76051.17940.1|Name=mRNA_M-pyrifera_M_contig76051.17940.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1368bp|location=Sequence derived from alignment at M-pyrifera_M_contig76051:355..1038+ (Macrocystis pyrifera P11B4 male)
CTAATCTTCACTCCCACAAACTGGAATACGCCACAATATGTGTACTTTGA
TTCCATCGTTGACGACGTTCACAGTGGCAACTTCTTCACCGCCACATTTT
CCCATACCGCCTCCTCCAATGACCCAACATATTCCAGCGATTCACTTACA
TTCATCCCAACTTCCGGTGAGTGCATTGCTTCTATCTACGACCAAACACA
ATCCTGCACATACCAATGTCCTTCAGGCAACTACATTGCAGCAACAACAT
CTGGAAATCCATGGTGTGTTCCATGTGCACCAGGATCATATTGTCCAGGA
GGTTGCAGTGGACCAATCTTGTGTCTTCCAGGACAAGCACAACCACTGTC
CAACGCAACATTGAGCGATGGGTGTGATAGTTGTGAGGTGGGGACATATT
CTGCATCAACAGGAGCATCCAATTGCACCTTGTGTCCTGAAGGATATGAA
TGTGTGACACAATCATCTCTCCCACAAATCTGTCCAGCTGGCACATTTGC
TGCCGAAGGCAATGGGACTTGTACAGCATGTCCAGCAGGAGCGTATGCAT
CGGTGGAAGGGAGTGGAAGGTGTTTGGAATGTCCAGCAGGGATGGTGTGT
GCGGAAGAAGGAACATCCTCACCCTCTCGGTGGTCTCCTGGAACTTTTTC
ATCCGTTGGCTCCTCTTCCTGTAGTCCTTGCCCTCTAATCTTCACTCCCA
CAAACTGGAATACGCCACAATATGTGTACTTTGATTCCATCGTTGACGAC
GTTCACAGTGGCAACTTCTTCACCGCCACATTTTCCCATACCGCCTCCTC
CAATGACCCAACATATTCCAGCGATTCACTTACATTCATCCCAACTTCCG
GTGAGTGCATTGCTTCTATCTACGACCAAACACAATCCTGCACATACCAA
TGTCCTTCAGGCAACTACATTGCAGCAACAACATCTGGAAATCCATGGTG
TGTTCCATGTGCACCAGGATCATATTGTCCAGGAGGTTGCAGTGGACCAA
TCTTGTGTCTTCCAGGACAAGCACAACCACTGTCCAACGCAACATTGAGC
GATGGGTGTGATAGTTGTGAGGTGGGGACATATTCTGCATCAACAGGAGC
ATCCAATTGCACCTTGTGTCCTGAAGGATATGAATGTGTGACACAATCAT
CTCTCCCACAAATCTGTCCAGCTGGCACATTTGCTGCCGAAGGCAATGGG
ACTTGTACAGCATGTCCAGCAGGAGCGTATGCATCGGTGGAAGGGAGTGG
AAGGTGTTTGGAATGTCCAGCAGGGATGGTGTGTGCGGAAGAAGGAACAT
CCTCACCCTCTCGGTGGTCTCCTGGAACTTTTTCATCCGTTGGCTCCTCT
TCCTGTAGTCCTTGCCCT
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