mRNA_M-pyrifera_M_contig76049.17939.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76049.17939.1
Unique NamemRNA_M-pyrifera_M_contig76049.17939.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76049.17939.1 vs. uniprot
Match: A0A7S1GAD2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAD2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.450e-12
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    4 WRKTLKVGSRVDAQDIAGVWYEGEVVQV-------VAADEVEFRAWKPSIAEWFRRRSLKLQPAWSKVRNFREFKVKDKVQM 228
            WR  LK G R+DA+D    WYE E+V+        V + +V FRAW+     W    S +L PAWSK+ NFR+F+V DKV++
Sbjct:  390 WRAALKPGDRLDAKDGQDKWYESEIVEKGEDPDSGVPSYKVHFRAWESKWDAWIACNSNRLMPAWSKIDNFRDFRVTDKVEV 471
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BLAST of mRNA_M-pyrifera_M_contig76049.17939.1 vs. uniprot
Match: A0A7S0PEU8_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PEU8_CAFRO)

HSP 1 Score: 66.2 bits (160), Expect = 5.920e-11
Identity = 39/77 (50.65%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    4 WRKTLKVGSRVDAQDIAGVWYEGEVVQVVAAD-EVEFRAWKPS-IAEWFRRRSLKLQPAWSKVRNFREFKVKDKVQM 228
            WR  L VGSR+DA D  G WYE EV      D  + FRAW  +   E   R S  LQPAWS+VRNFR F   D VQ+
Sbjct:  275 WRAGLGVGSRLDAMDTTGQWYEAEVAAAEGDDLTIRFRAWVGTKFNEHIARGSPCLQPAWSRVRNFRSFLPGDNVQV 351
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BLAST of mRNA_M-pyrifera_M_contig76049.17939.1 vs. uniprot
Match: A0A5A8E0U4_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E0U4_CAFRO)

HSP 1 Score: 66.2 bits (160), Expect = 6.110e-11
Identity = 39/77 (50.65%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    4 WRKTLKVGSRVDAQDIAGVWYEGEVVQVVAAD-EVEFRAWKPS-IAEWFRRRSLKLQPAWSKVRNFREFKVKDKVQM 228
            WR  L VGSR+DA D  G WYE EV      D  + FRAW  +   E   R S  LQPAWS+VRNFR F   D VQ+
Sbjct:  275 WRAGLGVGSRLDAMDTTGQWYEAEVAAAEGDDLTIRFRAWVGTKFNEHIARGSPCLQPAWSRVRNFRSFLPGDNVQV 351
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BLAST of mRNA_M-pyrifera_M_contig76049.17939.1 vs. uniprot
Match: A0A5D6XVG0_9STRA (USP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVG0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.450e-10
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:    1 EWRKTLKVGSRVDAQDIAGVWYEGEVVQV-VAADEVEFRAWKPSIAEWFRRRSLKLQPAWSKVRNFREFKVKDKVQM 228
            EWR  L VG  VDA D    WYE  V+++ +   +V +R W     EW  R S +L P  +KVRN+R F+V DKVQ+
Sbjct:  573 EWRYQLVVGQLVDALDSEKKWYESRVIELELTRVKVHYRGWTAKWDEWLSRSSDRLAPLHTKVRNWRAFRVHDKVQI 649
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BLAST of mRNA_M-pyrifera_M_contig76049.17939.1 vs. uniprot
Match: W2Q6C8_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q6C8_PHYPN)

HSP 1 Score: 61.2 bits (147), Expect = 3.480e-9
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    4 WRKTLKVGSRVDAQDIAGVWYEGEVVQVVAA-DEVEFRAWKPSIAEWFRRRSLKLQPAWSKVRNFREFKVKDKV 222
            WR  L +G  +DA+D   VWYE  VV + +   ++ +R W     EW  R S ++ P ++KVRN+R FKV D V
Sbjct:  509 WRYELWIGQLIDARDTDNVWYESRVVALSSTLVKLHYRGWTSKWDEWIERTSTRIAPLYTKVRNWRAFKVDDAV 582
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BLAST of mRNA_M-pyrifera_M_contig76049.17939.1 vs. uniprot
Match: A0A7S1G7H5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7H5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.730e-9
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    4 WRKTLKVGSRVDAQDIAGVWYEGEVVQV------VAADE--VEFRAWKPSIAEWFRRRSLKLQPAWSKVRNFRE 201
            +R++L  GSR+DA+D+ G WYE  V +V        AD+  +EFRAW+P  A WF R S  + P +S++  FRE
Sbjct:   39 FRQSLAPGSRLDARDMEGHWYESVVARVRPSASGALADDLLIEFRAWEPRWASWFPRDSPNVAPPFSRIAPFRE 112
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BLAST of mRNA_M-pyrifera_M_contig76049.17939.1 vs. uniprot
Match: A0A0P1AR61_PLAHL (Ubiquitin carboxyl-terminal hydrolase 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AR61_PLAHL)

HSP 1 Score: 59.7 bits (143), Expect = 1.240e-8
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    4 WRKTLKVGSRVDAQDIAGVWYEGEVVQVVAAD-EVEFRAWKPSIAEWFRRRSLKLQPAWSKVRNFREFKVKDKV 222
            WR TL+ G  +DA D    WYE  +V + A   +V +R W     EW  R S +L P  +KV+N+R+F++ DK+
Sbjct:  297 WRFTLESGQLIDAMDTDNKWYESRIVDLKANHVKVHYRGWTSKWDEWIDRLSSRLAPLHTKVQNWRDFQIDDKI 370
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76049.17939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S1GAD2_9STRA1.450e-1243.90Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0PEU8_CAFRO5.920e-1150.65Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8E0U4_CAFRO6.110e-1150.65Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5D6XVG0_9STRA7.450e-1044.16USP domain-containing protein n=1 Tax=Pythium bras... [more]
W2Q6C8_PHYPN3.480e-940.54Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A7S1G7H5_9STRA6.730e-943.24Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0P1AR61_PLAHL1.240e-839.19Ubiquitin carboxyl-terminal hydrolase 4 n=1 Tax=Pl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76049contigM-pyrifera_M_contig76049:579..1010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.2608
Hectar predicted targeting categoryother localisation
EggNOG OGs2EF8P@1,2SKGH@2759,3QAEG@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.7135303-CDS-M-pyrifera_M_contig76049:578..6801622816659.7135303-CDS-M-pyrifera_M_contig76049:578..680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76049 579..680 +
1692278103.8481185-CDS-M-pyrifera_M_contig76049:578..6801692278103.8481185-CDS-M-pyrifera_M_contig76049:578..680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76049 579..680 +
1622816659.7242308-CDS-M-pyrifera_M_contig76049:884..10101622816659.7242308-CDS-M-pyrifera_M_contig76049:884..1010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76049 885..1010 +
1692278103.859295-CDS-M-pyrifera_M_contig76049:884..10101692278103.859295-CDS-M-pyrifera_M_contig76049:884..1010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76049 885..1010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76049.17939.1prot_M-pyrifera_M_contig76049.17939.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76049 579..1010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76049.17939.1

>prot_M-pyrifera_M_contig76049.17939.1 ID=prot_M-pyrifera_M_contig76049.17939.1|Name=mRNA_M-pyrifera_M_contig76049.17939.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
EWRKTLKVGSRVDAQDIAGVWYEGEVVQVVAADEVEFRAWKPSIAEWFRR
RSLKLQPAWSKVRNFREFKVKDKVQM
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mRNA from alignment at M-pyrifera_M_contig76049:579..1010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76049.17939.1 ID=mRNA_M-pyrifera_M_contig76049.17939.1|Name=mRNA_M-pyrifera_M_contig76049.17939.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig76049:579..1010+ (Macrocystis pyrifera P11B4 male)
GAGTGGAGGAAGACGCTCAAAGTAGGGTCAAGAGTAGACGCACAAGACAT
TGCAGGGGTGTGGTATGAAGGGGAAGTGGTGCAAGTTGTAGCAGCGGATG
AAGTGGAAACAACTGTCAAAGGAAAAGGAGGGAGAAAACCGAAAATCCAC
GGGAACGAACACAGACCTGCATCTCCTATTCCATCGTCGTCGTCATCGTC
ATCTTCGTCATCTTCGTCATCTTCTGATCCATCCTCATCTTCACCTTCCT
CTCCATCCTCTTCCTCACCTTCCTCTCCATCCTCTTCTCCGATGGACGCG
TTGAAGGTTGAGTTTCGTGCTTGGAAGCCCAGCATTGCCGAGTGGTTCCG
TCGCCGGAGCCTTAAGTTGCAGCCTGCGTGGAGCAAAGTGCGGAACTTTA
GGGAGTTCAAGGTGAAGGACAAGGTGCAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76049:579..1010+

>mRNA_M-pyrifera_M_contig76049.17939.1 ID=mRNA_M-pyrifera_M_contig76049.17939.1|Name=mRNA_M-pyrifera_M_contig76049.17939.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig76049:579..1010+ (Macrocystis pyrifera P11B4 male)
GAGTGGAGGAAGACGCTCAAAGTAGGGTCAAGAGTAGACGCACAAGACAT
TGCAGGGGTGTGGTATGAAGGGGAAGTGGTGCAAGTTGTAGCAGCGGATG
AAGAGTGGAGGAAGACGCTCAAAGTAGGGTCAAGAGTAGACGCACAAGAC
ATTGCAGGGGTGTGGTATGAAGGGGAAGTGGTGCAAGTTGTAGCAGCGGA
TGAAGTTGAGTTTCGTGCTTGGAAGCCCAGCATTGCCGAGTGGTTCCGTC
GCCGGAGCCTTAAGTTGCAGCCTGCGTGGAGCAAAGTGCGGAACTTTAGG
GAGTTCAAGGTGAAGGACAAGGTGCAGATGGTTGAGTTTCGTGCTTGGAA
GCCCAGCATTGCCGAGTGGTTCCGTCGCCGGAGCCTTAAGTTGCAGCCTG
CGTGGAGCAAAGTGCGGAACTTTAGGGAGTTCAAGGTGAAGGACAAGGTG
CAGATG
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