mRNA_M-pyrifera_M_contig76046.17938.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76046.17938.1
Unique NamemRNA_M-pyrifera_M_contig76046.17938.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76046.17938.1 vs. uniprot
Match: A0A7V8V394_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V394_9BACT)

HSP 1 Score: 270 bits (691), Expect = 9.570e-92
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 WPMALLVCHCLSSGCSRQDTSHVRAGWVLAEGNVSLDEKPLDDAKISFVPASLKNLKDQEQWFTAAILKGRFKVELPLGDYKVRIQKYREGPGYISIPTIPKQFNESTVLTAKVTEATFNDLSFNLDQSEDD 396
            WPMALLVCHCLSSGCSRQDTSHVRAGWVLAEGNVSLDEKPLDDAKISFVPASLKNLKDQEQWFTAAILKGRFKVELPLGDYKVRIQKYREGPGYISIPTIPKQFNESTVLTAKVTEATFNDLSFNLDQSEDD
Sbjct:   13 WPMALLVCHCLSSGCSRQDTSHVRAGWVLAEGNVSLDEKPLDDAKISFVPASLKNLKDQEQWFTAAILKGRFKVELPLGDYKVRIQKYREGPGYISIPTIPKQFNESTVLTAKVTEATFNDLSFNLDQSEDD 144
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76046.17938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7V8V394_9BACT9.570e-92100.00Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76046contigM-pyrifera_M_contig76046:266..664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.6581256-CDS-M-pyrifera_M_contig76046:265..6581622816659.6581256-CDS-M-pyrifera_M_contig76046:265..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76046 266..658 -
1692278103.8296244-CDS-M-pyrifera_M_contig76046:265..6581692278103.8296244-CDS-M-pyrifera_M_contig76046:265..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76046 266..658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.6739423-UTR-M-pyrifera_M_contig76046:658..6641622816659.6739423-UTR-M-pyrifera_M_contig76046:658..664Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76046 659..664 -
1692278103.8391678-UTR-M-pyrifera_M_contig76046:658..6641692278103.8391678-UTR-M-pyrifera_M_contig76046:658..664Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76046 659..664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76046.17938.1prot_M-pyrifera_M_contig76046.17938.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76046 266..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76046.17938.1

>prot_M-pyrifera_M_contig76046.17938.1 ID=prot_M-pyrifera_M_contig76046.17938.1|Name=mRNA_M-pyrifera_M_contig76046.17938.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MALLVCHCLSSGCSRQDTSHVRAGWVLAEGNVSLDEKPLDDAKISFVPAS
LKNLKDQEQWFTAAILKGRFKVELPLGDYKVRIQKYREGPGYISIPTIPK
QFNESTVLTAKVTEATFNDLSFNLDQSEDD*
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mRNA from alignment at M-pyrifera_M_contig76046:266..664-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76046.17938.1 ID=mRNA_M-pyrifera_M_contig76046.17938.1|Name=mRNA_M-pyrifera_M_contig76046.17938.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig76046:266..664- (Macrocystis pyrifera P11B4 male)
TGGCCAATGGCATTACTCGTATGCCATTGCCTGAGTTCCGGCTGTAGTCG
CCAGGATACATCGCATGTTCGAGCTGGCTGGGTGTTGGCAGAAGGCAATG
TATCGCTCGACGAGAAACCGCTGGACGACGCAAAGATATCGTTCGTGCCA
GCTTCGTTAAAAAATCTCAAGGATCAAGAACAATGGTTTACCGCAGCCAT
TCTCAAAGGGCGTTTCAAGGTCGAACTCCCATTGGGTGATTACAAGGTGA
GAATACAAAAATACCGGGAAGGGCCAGGCTATATCAGCATTCCAACGATT
CCCAAGCAATTCAACGAAAGCACGGTCCTAACTGCCAAAGTAACAGAAGC
AACGTTCAATGACTTGTCATTTAACCTCGATCAGAGCGAAGACGACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76046:266..664-

>mRNA_M-pyrifera_M_contig76046.17938.1 ID=mRNA_M-pyrifera_M_contig76046.17938.1|Name=mRNA_M-pyrifera_M_contig76046.17938.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig76046:266..664- (Macrocystis pyrifera P11B4 male)
ATGGCATTACTCGTATGCCATTGCCTGAGTTCCGGCTGTAGTCGCCAGGA
TACATCGCATGTTCGAGCTGGCTGGGTGTTGGCAGAAGGCAATGTATCGC
TCGACGAGAAACCGCTGGACGACGCAAAGATATCGTTCGTGCCAGCTTCG
TTAAAAAATCTCAAGGATCAAGAACAATGGTTTACCGCAGCCATTCTCAA
AGGGCGTTTCAAGGTCGAACTCCCATTGGGTGATTACAAGGTGAGAATAC
AAAAATACCGGGAAGGGCCAGGCTATATCAGCATTCCAACGATTCCCAAG
CAATTCAACGAAAGCACGGTCCTAACTGCCAAAGTAACAGAAGCAACGTT
CAATGACTTGTCATTTAACCTCGATCAGAGCGAAGACGACTAAATGGCAT
TACTCGTATGCCATTGCCTGAGTTCCGGCTGTAGTCGCCAGGATACATCG
CATGTTCGAGCTGGCTGGGTGTTGGCAGAAGGCAATGTATCGCTCGACGA
GAAACCGCTGGACGACGCAAAGATATCGTTCGTGCCAGCTTCGTTAAAAA
ATCTCAAGGATCAAGAACAATGGTTTACCGCAGCCATTCTCAAAGGGCGT
TTCAAGGTCGAACTCCCATTGGGTGATTACAAGGTGAGAATACAAAAATA
CCGGGAAGGGCCAGGCTATATCAGCATTCCAACGATTCCCAAGCAATTCA
ACGAAAGCACGGTCCTAACTGCCAAAGTAACAGAAGCAACGTTCAATGAC
TTGTCATTTAACCTCGATCAGAGCGAAGACGACTAA
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