prot_M-pyrifera_M_contig75934.17916.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig75934.17916.1
Unique Nameprot_M-pyrifera_M_contig75934.17916.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length52
Homology
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BLAST of mRNA_M-pyrifera_M_contig75934.17916.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 4.450e-9
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0 
Query:    1 IGLSVTFFSALALVGPNRAFTCALRLWLWSFGFDLAFGALVLKLWHALNAVE 52
            +G+ VTF S  AL+G     TCALRLW +S GFDLAFGAL LK+  A +A E
Sbjct:  176 VGIGVTFLSIFALLGATTDLTCALRLWGYSAGFDLAFGALTLKMRSACSAAE 227
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75934.17916.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH00_ECTSI4.450e-957.69G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017978GPCR family 3, C-terminalPFAMPF000037tm_3coord: 1..47
e-value: 1.5E-8
score: 34.6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 49..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..48
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..28
NoneNo IPR availableTMHMMTMhelixcoord: 26..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75934contigM-pyrifera_M_contig75934:665..820 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75934.17916.1mRNA_M-pyrifera_M_contig75934.17916.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig75934 665..820 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig75934.17916.1 ID=prot_M-pyrifera_M_contig75934.17916.1|Name=mRNA_M-pyrifera_M_contig75934.17916.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
IGLSVTFFSALALVGPNRAFTCALRLWLWSFGFDLAFGALVLKLWHALNA
VE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C