mRNA_M-pyrifera_M_contig75934.17916.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75934.17916.1
Unique NamemRNA_M-pyrifera_M_contig75934.17916.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75934.17916.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 4.450e-9
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 IGLSVTFFSALALVGPNRAFTCALRLWLWSFGFDLAFGALVLKLWHALNAVE 156
            +G+ VTF S  AL+G     TCALRLW +S GFDLAFGAL LK+  A +A E
Sbjct:  176 VGIGVTFLSIFALLGATTDLTCALRLWGYSAGFDLAFGALTLKMRSACSAAE 227
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75934.17916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH00_ECTSI4.450e-957.69G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75934contigM-pyrifera_M_contig75934:665..820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816658.5399697-CDS-M-pyrifera_M_contig75934:664..8201622816658.5399697-CDS-M-pyrifera_M_contig75934:664..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75934 665..820 -
1692278103.2120645-CDS-M-pyrifera_M_contig75934:664..8201692278103.2120645-CDS-M-pyrifera_M_contig75934:664..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75934 665..820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75934.17916.1prot_M-pyrifera_M_contig75934.17916.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75934 665..820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75934.17916.1

>prot_M-pyrifera_M_contig75934.17916.1 ID=prot_M-pyrifera_M_contig75934.17916.1|Name=mRNA_M-pyrifera_M_contig75934.17916.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
IGLSVTFFSALALVGPNRAFTCALRLWLWSFGFDLAFGALVLKLWHALNA
VE
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mRNA from alignment at M-pyrifera_M_contig75934:665..820-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75934.17916.1 ID=mRNA_M-pyrifera_M_contig75934.17916.1|Name=mRNA_M-pyrifera_M_contig75934.17916.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig75934:665..820- (Macrocystis pyrifera P11B4 male)
ATTGGCCTTAGTGTGACGTTTTTCTCGGCGCTTGCCCTCGTCGGGCCGAA
CCGAGCGTTTACCTGCGCCTTGAGGCTGTGGCTCTGGAGTTTTGGGTTCG
ACCTGGCCTTCGGCGCGCTGGTGTTGAAGCTGTGGCACGCGCTCAATGCC
GTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75934:665..820-

>mRNA_M-pyrifera_M_contig75934.17916.1 ID=mRNA_M-pyrifera_M_contig75934.17916.1|Name=mRNA_M-pyrifera_M_contig75934.17916.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig75934:665..820- (Macrocystis pyrifera P11B4 male)
ATTGGCCTTAGTGTGACGTTTTTCTCGGCGCTTGCCCTCGTCGGGCCGAA
CCGAGCGTTTACCTGCGCCTTGAGGCTGTGGCTCTGGAGTTTTGGGTTCG
ACCTGGCCTTCGGCGCGCTGGTGTTGAAGCTGTGGCACGCGCTCAATGCC
GTCGAGATTGGCCTTAGTGTGACGTTTTTCTCGGCGCTTGCCCTCGTCGG
GCCGAACCGAGCGTTTACCTGCGCCTTGAGGCTGTGGCTCTGGAGTTTTG
GGTTCGACCTGGCCTTCGGCGCGCTGGTGTTGAAGCTGTGGCACGCGCTC
AATGCCGTCGAG
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