mRNA_M-pyrifera_M_contig7590.17911.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7590.17911.1 vs. uniprot
Match: D7G1W1_ECTSI (Carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W1_ECTSI) HSP 1 Score: 355 bits (912), Expect = 3.330e-115 Identity = 209/381 (54.86%), Postives = 245/381 (64.30%), Query Frame = 1 Query: 1 MVAADMGHLKDTVEKLDLAFRETMGRQGKDLAAVVDQLGLR--SAESLQGSANRTPNAAAEQSFGKTKGNGDEKIRPAASDPAGNNSPNK-NLASGNI-GTGQYQQLQSQQG--HATADFQGFEKSEGGGAXXXXXXXGLWSQVGEXXXXXXXXPXXXXXXGESV-VWNAYSRGKWVNGQWVPKVLPDDTTPDVPSLV---KNQRRVLLLSERRSGGHAVGGILNADPRVFYVGDPCRMGGGPEALDGHACSLALSRLLACQPTVNDIRNLYSFSYIVGRSRALSEFEDLRWRVGGSPEDNDELVRDKLVQQCRLSKAVVIKETRLPEVTPQLTTEELGTEFLHIVRDPRAAVHGLAEAWEGSKSNYNLAMAEDCTELASR 1113 MVAADMGHLKDTVEKLD RETMG+ GKDLAAV+ QLGL S +L + P A + K +G PA P ++ LA G+ G G L + G H + S GG G +Q E V VWNAY RGKWVNGQWVPKVL DDT+PD+ L K QRRVLLLSE+RSGGHAVGG+LNAD RVFYV DPCRMGGGPEALD ACSLA++RLLACQPT NDIRNL+SFSYIV RSR LSE E LRW+ G+P++NDE R +++QCRLS VV+KETRL EV P+L+T EL EFLHIVRDPRAA+HG+AE WE S + +MA DC+++ASR Sbjct: 1 MVAADMGHLKDTVEKLDHIVRETMGQHGKDLAAVLVQLGLERPSRSNLVAGSESRPMPAEGLTNNKARG-----ATPAWPSPLQQAPQDQLQLAGGSRQGQGDASVLGAGGGVDHVAVRGTAEDGSLAGGGPTTGKALGRDTQGNGKGAAGGLTEEGARGAAEGVAVWNAYQRGKWVNGQWVPKVLQDDTSPDLSQLATTGKKQRRVLLLSEKRSGGHAVGGVLNADTRVFYVADPCRMGGGPEALDAGACSLAVTRLLACQPTTNDIRNLFSFSYIVERSRVLSESEGLRWQAEGTPDENDEETRAAVIRQCRLSSVVVVKETRLAEVAPRLSTPELDLEFLHIVRDPRAAIHGMAELWEKSDNKMERSMARDCSDVASR 376
BLAST of mRNA_M-pyrifera_M_contig7590.17911.1 vs. uniprot
Match: A0A835ZGF5_9STRA (HEAT repeat-containing protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF5_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.770e-12 Identity = 54/182 (29.67%), Postives = 78/182 (42.86%), Query Frame = 1 Query: 571 VKNQRRVLLLSERRSGGHAVGGILNADPRVFYVGDPCRMGG-GPEALDGHACSLALSRLLACQPTVNDIRNLYSFSYIVGRSRALSEFEDLRWRVGGSPEDNDELVRDKLVQQCRLSKAVVIKETRLPEVTPQLTTEELGTEFLHIVRDPRAAVHGLAEAWEGSKSNYNLAMAEDCTELASR 1113 V Q+R+L++SE RSG G + N++ ++FY+ +PC+ GG G AL AC L RLL C+PTV D+ N++ RD R S VV+KE R V + T+ +H+VRDPR A+ W G E C ++ Sbjct: 244 VAEQKRLLIVSEPRSGSTQFGELFNSNEQLFYLFEPCKGGGDGGTALYDEACGYLLQRLLECEPTVKDVDNMF---------------------------------RD------RQSAGVVVKEIRTVGVHVDMLPR--ATKVMHLVRDPRDAMLSALALWRGQDGGLEFQSGEFCRRTMAK 384 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7590.17911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7590.17911.1 >prot_M-pyrifera_M_contig7590.17911.1 ID=prot_M-pyrifera_M_contig7590.17911.1|Name=mRNA_M-pyrifera_M_contig7590.17911.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=372bp MVAADMGHLKDTVEKLDLAFRETMGRQGKDLAAVVDQLGLRSAESLQGSAback to top mRNA from alignment at M-pyrifera_M_contig7590:2413..12404+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7590.17911.1 ID=mRNA_M-pyrifera_M_contig7590.17911.1|Name=mRNA_M-pyrifera_M_contig7590.17911.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=9992bp|location=Sequence derived from alignment at M-pyrifera_M_contig7590:2413..12404+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7590:2413..12404+ >mRNA_M-pyrifera_M_contig7590.17911.1 ID=mRNA_M-pyrifera_M_contig7590.17911.1|Name=mRNA_M-pyrifera_M_contig7590.17911.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2232bp|location=Sequence derived from alignment at M-pyrifera_M_contig7590:2413..12404+ (Macrocystis pyrifera P11B4 male)back to top |