mRNA_M-pyrifera_M_contig75880.17908.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75880.17908.1
Unique NamemRNA_M-pyrifera_M_contig75880.17908.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A7S0PFG6_CAFRO (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PFG6_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 3.760e-15
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTL 150
            ASVVLE A ERH   GKY D P+G FVVRGEN+V+IAELDEAKE  HP L
Sbjct:   84 ASVVLEKAVERHHAAGKYADTPVGTFVVRGENIVLIAELDEAKEKAHPAL 133
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BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A5A8EHE8_CAFRO (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHE8_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 5.970e-15
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTL 150
            ASVVLE A ERH   GKY D P+G FVVRGEN+V+IAELDEAKE  HP L
Sbjct:   50 ASVVLEKAVERHHAAGKYADTPVGTFVVRGENIVLIAELDEAKEKAHPAL 99
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BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A5A8C2S2_CAFRO (MFS domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C2S2_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 8.710e-14
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTL 150
            ASVVLE A ERH   GKY D P+G FVVRGEN+V+IAELDEAKE  HP L
Sbjct:   50 ASVVLEKAVERHHAAGKYADTPVGTFVVRGENIVLIAELDEAKEKAHPAL 99
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BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: W4GDA2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GDA2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.580e-11
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGM 252
            A++VLE   ERH  G  Y D PLG++++RGEN+V++ ELD+AKE E   L      + +   +E+ E+       PT ++ W  
Sbjct:   16 ANIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQG-----LPTVRDAWNF 94
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BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A812NMD7_9DINO (Eefsec protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NMD7_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 2.110e-10
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGM 252
            +++VLED  ERH   GK  D PLG+++VRG+ +V++AELD  KE   P + P+ D++ V+     EEE   A  + T KE+W M
Sbjct:  669 SNLVLEDTMERHVAAGKMCDIPLGLYIVRGDTIVLVAELDAEKEAALP-VEPA-DIEEVIGLEIAEEEAAIAAGRETYKESWNM 750
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BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A6G0XJC2_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJC2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.590e-10
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGM 252
            +++VLE+  ERH  G  Y D PLG++++RGEN+V++ ELD+AKE     L      + +   +E++E+      Q T ++TW  
Sbjct:   39 SNIVLEETCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAADENLVRKTAEEVLTAEMEQQEQG-----QATVRDTWNF 117
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BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A485L216_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L216_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.710e-10
Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGM 252
            +++VLED  ERH  G  Y D PLG++++RGEN+V++ ELD+ KE     L      + +   +E+ E+      QPT ++ W  
Sbjct:   40 SNIVLEDTCERHVVGTTYCDIPLGLYIIRGENIVLMGELDQEKEAADENLTRKSPEEVLTAEMEQMEQG-----QPTVRDAWNF 118
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BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A7S0I2C3_9CRYP (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I2C3_9CRYP)

HSP 1 Score: 64.3 bits (155), Expect = 2.830e-10
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    4 SVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLR--PSEDLDTVVDAIEEEEERKKALLQPTAKETWGMG 255
            +VVLEDA ERH  G  Y D+ +G++V+RGENLV++AELD  KE   P LR  P + +     A++ E+   + L +  + +  G+G
Sbjct:  169 NVVLEDAFERHVVGNSYADERMGLYVIRGENLVLLAELDMHKEQNQPKLREVPLQTIMAQKAALKHEKAEDELLRKKLSAQALGLG 254
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BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: W4GB80_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB80_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.910e-10
Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGM 252
            +++VLE   ERH  G  Y D PLG++++RGEN+V++ ELD+AKE E   L      + +   +E+ E+       PT ++ W  
Sbjct:   42 SNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQG-----LPTVRDAWNF 120
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BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Match: A0A8K1FQE7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQE7_PYTOL)

HSP 1 Score: 61.6 bits (148), Expect = 4.550e-10
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTLRPSEDLDTVVDAIEEEEERKKALLQPTAKETWGMGEA 261
            ++++LED  ERH  GG + D  LG+ ++RG+N+V++ ELDE KE + P ++ +      ++ + E EER  A    + +E WG   A
Sbjct:   50 SNIILEDTYERHVAGGLFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRAS-----MEEVLEAEERLNADGASSVREQWGFDAA 131
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75880.17908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0PFG6_CAFRO3.760e-1572.00U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=C... [more]
A0A5A8EHE8_CAFRO5.970e-1572.00U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=C... [more]
A0A5A8C2S2_CAFRO8.710e-1472.00MFS domain-containing protein n=3 Tax=Cafeteria ro... [more]
W4GDA2_9STRA7.580e-1136.90Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A812NMD7_9DINO2.110e-1042.86Eefsec protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A6G0XJC2_9STRA2.590e-1035.71U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
A0A485L216_9STRA2.710e-1035.71U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
A0A7S0I2C3_9CRYP2.830e-1040.70U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H... [more]
W4GB80_9STRA3.910e-1035.71U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=A... [more]
A0A8K1FQE7_PYTOL4.550e-1035.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75880contigM-pyrifera_M_contig75880:235..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.4e-08
Seed eggNOG ortholog55529.EKX46894
Preferred nameLSM1
KEGG koko:K03952,ko:K12620,ko:K14794,ko:K16931
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko03018,ko04714,ko04723,ko04913,ko04925,ko04927,ko04932,ko04934,ko04979,ko05010,ko05012,ko05016,map00190,map01100,map03018,map04714,map04723,map04913,map04925,map04927,map04932,map04934,map04979,map05010,map05012,map05016
KEGG ModuleM00146,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000290,GO:0000291,GO:0000339,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009628,GO:0009631,GO:0009651,GO:0009892,GO:0009987,GO:0010035,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0010721,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019827,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030424,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033962,GO:0034518,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036002,GO:0036464,GO:0036477,GO:0042221,GO:0042538,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065003,GO:0065007,GO:0070925,GO:0071044,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0098727,GO:0120025,GO:0120038,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990124,GO:1990726,GO:1990904,GO:2000026
EggNOG free text desc.deadenylation-dependent decapping of nuclear-transcribed mRNA
EggNOG OGsKOG1782@1,KOG1782@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03019
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.7724786-CDS-M-pyrifera_M_contig75880:234..5101622816657.7724786-CDS-M-pyrifera_M_contig75880:234..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75880 235..510 +
1692278102.671763-CDS-M-pyrifera_M_contig75880:234..5101692278102.671763-CDS-M-pyrifera_M_contig75880:234..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75880 235..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75880.17908.1prot_M-pyrifera_M_contig75880.17908.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75880 235..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75880.17908.1

>prot_M-pyrifera_M_contig75880.17908.1 ID=prot_M-pyrifera_M_contig75880.17908.1|Name=mRNA_M-pyrifera_M_contig75880.17908.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
ASVVLEDAAERHFGGGKYFDDPLGVFVVRGENLVMIAELDEAKEGEHPTL
RPSEDLDTVVDAIEEEEERKKALLQPTAKETWGMGEAEGEV*
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mRNA from alignment at M-pyrifera_M_contig75880:235..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75880.17908.1 ID=mRNA_M-pyrifera_M_contig75880.17908.1|Name=mRNA_M-pyrifera_M_contig75880.17908.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig75880:235..510+ (Macrocystis pyrifera P11B4 male)
GCGAGTGTGGTGTTGGAGGATGCGGCTGAGCGGCATTTCGGGGGCGGAAA
GTACTTCGACGACCCTCTGGGGGTGTTTGTGGTGCGAGGGGAGAATTTGG
TGATGATTGCCGAGCTGGACGAAGCCAAGGAAGGGGAGCACCCCACGCTA
CGGCCGAGTGAGGACCTGGACACCGTGGTGGATGCCATCGAGGAGGAGGA
GGAACGGAAGAAAGCGCTCCTCCAACCCACTGCCAAGGAAACGTGGGGCA
TGGGGGAGGCCGAAGGGGAAGTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75880:235..510+

>mRNA_M-pyrifera_M_contig75880.17908.1 ID=mRNA_M-pyrifera_M_contig75880.17908.1|Name=mRNA_M-pyrifera_M_contig75880.17908.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig75880:235..510+ (Macrocystis pyrifera P11B4 male)
GCGAGTGTGGTGTTGGAGGATGCGGCTGAGCGGCATTTCGGGGGCGGAAA
GTACTTCGACGACCCTCTGGGGGTGTTTGTGGTGCGAGGGGAGAATTTGG
TGATGATTGCCGAGCTGGACGAAGCCAAGGAAGGGGAGCACCCCACGCTA
CGGCCGAGTGAGGACCTGGACACCGTGGTGGATGCCATCGAGGAGGAGGA
GGAACGGAAGAAAGCGCTCCTCCAACCCACTGCCAAGGAAACGTGGGGCA
TGGGGGAGGCCGAAGGGGAAGTATGAGCGAGTGTGGTGTTGGAGGATGCG
GCTGAGCGGCATTTCGGGGGCGGAAAGTACTTCGACGACCCTCTGGGGGT
GTTTGTGGTGCGAGGGGAGAATTTGGTGATGATTGCCGAGCTGGACGAAG
CCAAGGAAGGGGAGCACCCCACGCTACGGCCGAGTGAGGACCTGGACACC
GTGGTGGATGCCATCGAGGAGGAGGAGGAACGGAAGAAAGCGCTCCTCCA
ACCCACTGCCAAGGAAACGTGGGGCATGGGGGAGGCCGAAGGGGAAGTAT
GA
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