mRNA_M-pyrifera_M_contig75870.17901.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75870.17901.1
Unique NamemRNA_M-pyrifera_M_contig75870.17901.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75870.17901.1 vs. uniprot
Match: A0A0G4HEY0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HEY0_9ALVE)

HSP 1 Score: 65.5 bits (158), Expect = 1.500e-9
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:    1 CNERSLAISNVYLTGSLATFVGSFAFGFFIDAFGPAMGARIGMIGIICGFVLSALALILDLSVLLYPGMGLLGFCGLSQQISVLSGSTLFPGYKGTFVSMMSGSFDLGSLAFVIVAGV-AGAGIPLQWSLLGYTGVLL 411
            C  +   I+ V+  G  AT + +   G  +D  GP +GA +    +  G V  A+A   D S   Y G  +LG    +  ++  S STLF G  GT  S++SG+FD  S AF+I A +   A I L+  LLGY  ++L
Sbjct:   33 CVRQKNEITAVFSYGITATVLATLLMGSTVDFLGPRIGAFLAECCVAVGLVCLAVAS-KDASAFYYIGAVMLGAVATAPMLAAFSISTLFEGSAGTVTSLISGTFDASSAAFLIAAKIFTAASISLRAGLLGYAALVL 169
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BLAST of mRNA_M-pyrifera_M_contig75870.17901.1 vs. uniprot
Match: A0A482RHL9_9ARCH (MFS transporter (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RHL9_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 5.770e-7
Identity = 39/144 (27.08%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:    1 CNERSLAISNVYLTGSLATFVGSFAFGFFIDAFGPAMGARIGMIGIICGFVLSALALILDLSV-LLYPGMGLLGFCGLSQQISVLSGSTLFPGYKGTFVSMMSGSFDLGSLAFVIVAGVAGAGIPLQWSLLGYT-GVLLLPLLV 426
            C +++LA++ ++  GS+ +FV     G  +   GP     +       G +L+ L+     S  L+Y      G    S  + + + S +FPG +G  + +++GSFD G++ F+++  +  +GI  +  LL Y  G  LL LL+
Sbjct:   68 CTDQALALNGIFNVGSICSFVAPIFVGLLMARGGPRAAQGVTAFVFFLGALLATLSATAGSSTALMYAAFACFGLGASSALLGLYNVSNMFPGREGLVMGIVNGSFDAGTIVFLVMRALYDSGISFRTVLLAYLCGPALLLLLI 211
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75870.17901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0G4HEY0_9ALVE1.500e-934.78Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A482RHL9_9ARCH5.770e-727.08MFS transporter (Fragment) n=1 Tax=archaeon TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75870contigM-pyrifera_M_contig75870:550..1008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.5351644-CDS-M-pyrifera_M_contig75870:549..10081622816657.5351644-CDS-M-pyrifera_M_contig75870:549..1008Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75870 550..1008 -
1692278102.5784125-CDS-M-pyrifera_M_contig75870:549..10081692278102.5784125-CDS-M-pyrifera_M_contig75870:549..1008Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75870 550..1008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75870.17901.1prot_M-pyrifera_M_contig75870.17901.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75870 550..1008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75870.17901.1

>prot_M-pyrifera_M_contig75870.17901.1 ID=prot_M-pyrifera_M_contig75870.17901.1|Name=mRNA_M-pyrifera_M_contig75870.17901.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
CNERSLAISNVYLTGSLATFVGSFAFGFFIDAFGPAMGARIGMIGIICGF
VLSALALILDLSVLLYPGMGLLGFCGLSQQISVLSGSTLFPGYKGTFVSM
MSGSFDLGSLAFVIVAGVAGAGIPLQWSLLGYTGVLLLPLLVYTFLFPPS
RPY
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mRNA from alignment at M-pyrifera_M_contig75870:550..1008-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75870.17901.1 ID=mRNA_M-pyrifera_M_contig75870.17901.1|Name=mRNA_M-pyrifera_M_contig75870.17901.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig75870:550..1008- (Macrocystis pyrifera P11B4 male)
TGTAACGAACGTTCCCTTGCTATTTCCAACGTCTACTTGACAGGATCATT
GGCTACGTTTGTTGGGTCGTTCGCATTCGGTTTCTTTATTGATGCGTTTG
GTCCTGCGATGGGTGCTCGTATTGGGATGATTGGAATCATTTGTGGGTTT
GTGTTGAGTGCTCTTGCATTGATTCTTGACTTGAGTGTGTTGTTGTACCC
AGGAATGGGGCTCCTTGGGTTCTGTGGACTCTCACAGCAAATTAGTGTCT
TGTCTGGCTCCACATTATTTCCCGGATACAAAGGAACATTTGTATCGATG
ATGTCTGGGTCATTTGATTTGGGTTCGTTGGCATTTGTGATTGTTGCTGG
AGTAGCAGGTGCTGGGATCCCGTTGCAATGGTCCTTGCTTGGATACACTG
GAGTTTTGCTCCTCCCTCTTCTTGTCTACACTTTTCTTTTTCCCCCATCT
AGACCTTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75870:550..1008-

>mRNA_M-pyrifera_M_contig75870.17901.1 ID=mRNA_M-pyrifera_M_contig75870.17901.1|Name=mRNA_M-pyrifera_M_contig75870.17901.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig75870:550..1008- (Macrocystis pyrifera P11B4 male)
TGTAACGAACGTTCCCTTGCTATTTCCAACGTCTACTTGACAGGATCATT
GGCTACGTTTGTTGGGTCGTTCGCATTCGGTTTCTTTATTGATGCGTTTG
GTCCTGCGATGGGTGCTCGTATTGGGATGATTGGAATCATTTGTGGGTTT
GTGTTGAGTGCTCTTGCATTGATTCTTGACTTGAGTGTGTTGTTGTACCC
AGGAATGGGGCTCCTTGGGTTCTGTGGACTCTCACAGCAAATTAGTGTCT
TGTCTGGCTCCACATTATTTCCCGGATACAAAGGAACATTTGTATCGATG
ATGTCTGGGTCATTTGATTTGGGTTCGTTGGCATTTGTGATTGTTGCTGG
AGTAGCAGGTGCTGGGATCCCGTTGCAATGGTCCTTGCTTGGATACACTG
GAGTTTTGCTCCTCCCTCTTCTTGTCTACACTTTTCTTTTTCCCCCATCT
AGACCTTACTGTAACGAACGTTCCCTTGCTATTTCCAACGTCTACTTGAC
AGGATCATTGGCTACGTTTGTTGGGTCGTTCGCATTCGGTTTCTTTATTG
ATGCGTTTGGTCCTGCGATGGGTGCTCGTATTGGGATGATTGGAATCATT
TGTGGGTTTGTGTTGAGTGCTCTTGCATTGATTCTTGACTTGAGTGTGTT
GTTGTACCCAGGAATGGGGCTCCTTGGGTTCTGTGGACTCTCACAGCAAA
TTAGTGTCTTGTCTGGCTCCACATTATTTCCCGGATACAAAGGAACATTT
GTATCGATGATGTCTGGGTCATTTGATTTGGGTTCGTTGGCATTTGTGAT
TGTTGCTGGAGTAGCAGGTGCTGGGATCCCGTTGCAATGGTCCTTGCTTG
GATACACTGGAGTTTTGCTCCTCCCTCTTCTTGTCTACACTTTTCTTTTT
CCCCCATCTAGACCTTAC
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