mRNA_M-pyrifera_M_contig75857.17895.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75857.17895.1
Unique NamemRNA_M-pyrifera_M_contig75857.17895.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75857.17895.1 vs. uniprot
Match: A0A848UGL0_9ACTN (GGDEF domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UGL0_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 9.560e-10
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:   10 HLELVTAAGNDVILASQLLTERADAQTRQAIATIATLAILSIAFAIALTRFIGRPLKLLAETATKLRDGESDEDFQPRGPSEIRQAAYALNDAGANIRLVERQAK 324
            H +LVTAAG D    S + TERA      A+  I  L +LS+  A+AL RFI RPL+ +A     +R G         GP E+R+   A+ +A A++ L E+QA+
Sbjct:  311 HGDLVTAAGADAAEHSAVATERAARSASTALWAIGGLTVLSLGSALALARFIARPLRRMAAATLAVRRGVVPSGDVVNGPMEVRRVGTAVIEAAAHVALAEQQAR 415
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75857.17895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A848UGL0_9ACTN9.560e-1039.05GGDEF domain-containing protein n=1 Tax=Ilumatobac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75857contigM-pyrifera_M_contig75857:7..330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.2867117-CDS-M-pyrifera_M_contig75857:6..3301622816657.2867117-CDS-M-pyrifera_M_contig75857:6..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75857 7..330 -
1692278102.4628413-CDS-M-pyrifera_M_contig75857:6..3301692278102.4628413-CDS-M-pyrifera_M_contig75857:6..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75857 7..330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75857.17895.1prot_M-pyrifera_M_contig75857.17895.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75857 7..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75857.17895.1

>prot_M-pyrifera_M_contig75857.17895.1 ID=prot_M-pyrifera_M_contig75857.17895.1|Name=mRNA_M-pyrifera_M_contig75857.17895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
SDLHLELVTAAGNDVILASQLLTERADAQTRQAIATIATLAILSIAFAIA
LTRFIGRPLKLLAETATKLRDGESDEDFQPRGPSEIRQAAYALNDAGANI
RLVERQAK
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mRNA from alignment at M-pyrifera_M_contig75857:7..330-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75857.17895.1 ID=mRNA_M-pyrifera_M_contig75857.17895.1|Name=mRNA_M-pyrifera_M_contig75857.17895.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig75857:7..330- (Macrocystis pyrifera P11B4 male)
TCGGACCTCCATCTCGAACTGGTCACGGCGGCGGGCAACGACGTCATCCT
CGCGAGTCAGCTGCTGACCGAACGAGCTGATGCCCAGACTCGGCAGGCCA
TCGCCACGATCGCCACGTTGGCGATCCTGTCGATCGCCTTTGCCATCGCC
CTGACCCGATTCATCGGTCGACCGCTCAAGCTGCTGGCCGAGACGGCGAC
GAAGCTGCGTGACGGCGAGAGCGACGAAGACTTCCAGCCGCGAGGACCGA
GCGAGATCCGCCAGGCCGCCTACGCGTTGAACGACGCCGGCGCCAACATC
CGCCTCGTCGAACGCCAGGCGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75857:7..330-

>mRNA_M-pyrifera_M_contig75857.17895.1 ID=mRNA_M-pyrifera_M_contig75857.17895.1|Name=mRNA_M-pyrifera_M_contig75857.17895.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig75857:7..330- (Macrocystis pyrifera P11B4 male)
TCGGACCTCCATCTCGAACTGGTCACGGCGGCGGGCAACGACGTCATCCT
CGCGAGTCAGCTGCTGACCGAACGAGCTGATGCCCAGACTCGGCAGGCCA
TCGCCACGATCGCCACGTTGGCGATCCTGTCGATCGCCTTTGCCATCGCC
CTGACCCGATTCATCGGTCGACCGCTCAAGCTGCTGGCCGAGACGGCGAC
GAAGCTGCGTGACGGCGAGAGCGACGAAGACTTCCAGCCGCGAGGACCGA
GCGAGATCCGCCAGGCCGCCTACGCGTTGAACGACGCCGGCGCCAACATC
CGCCTCGTCGAACGCCAGGCGAAGTCGGACCTCCATCTCGAACTGGTCAC
GGCGGCGGGCAACGACGTCATCCTCGCGAGTCAGCTGCTGACCGAACGAG
CTGATGCCCAGACTCGGCAGGCCATCGCCACGATCGCCACGTTGGCGATC
CTGTCGATCGCCTTTGCCATCGCCCTGACCCGATTCATCGGTCGACCGCT
CAAGCTGCTGGCCGAGACGGCGACGAAGCTGCGTGACGGCGAGAGCGACG
AAGACTTCCAGCCGCGAGGACCGAGCGAGATCCGCCAGGCCGCCTACGCG
TTGAACGACGCCGGCGCCAACATCCGCCTCGTCGAACGCCAGGCGAAG
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