mRNA_M-pyrifera_M_contig75846.17891.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75846.17891.1
Unique NamemRNA_M-pyrifera_M_contig75846.17891.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Match: D8LI31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI31_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 6.470e-35
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 DDARLTVPGRVWFAKPRRLKNGATLARVMQGNLKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 198
            DDARLTVPGRVWFAKPRRLKNGATL RVM+GN+KEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV
Sbjct:  591 DDARLTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 656          
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Match: A0A835YUE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 6.980e-22
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 DDARLTVPGRVWFAKPRRLKNGATLARVMQGNLKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 198
            DD+ L VPG VWF KPRRL+ GAT+ +   G L++D+LWQ+HD+MLTKSMLSHH L +Y+ +LDRV
Sbjct:  439 DDSALIVPGTVWFVKPRRLRAGATMTKSRSGALRDDVLWQMHDVMLTKSMLSHHSLARYVAVLDRV 504          
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Match: A0A4D9DDN3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDN3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.990e-18
Identity = 36/62 (58.06%), Postives = 51/62 (82.26%), Query Frame = 1
Query:   13 LTVPGRVWFAKPRRLKNGATLARVMQGNLKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 198
            L +PGRV++ KPR+L  GAT+  VM+GNL+ED+LW++HDI +++SML HH LDKYI +L R+
Sbjct:  526 LILPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWKIHDIFVSQSMLKHHSLDKYITVLARI 587          
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Match: A0A7S1B8E3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8E3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.330e-12
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 DDARLTVPGRVWFAKPRRLKNGATLARVMQGNLKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 198
            ++ R++VPG+ +  KPRRL +GA++  V +GN++ ++LWQLHD+ L+  M  H  LD YI  LDRV
Sbjct:  469 EEFRMSVPGKAFVVKPRRLDHGASMYEVEEGNVRAEVLWQLHDVPLSIKMWRHGTLDSYIHGLDRV 534          
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Match: K0SG86_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SG86_THAOC)

HSP 1 Score: 64.7 bits (156), Expect = 9.170e-12
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    4 DARLTVPGRVWFAKPRRLKNGATLARVMQGNLKEDM----LWQLHDIMLTKSMLSHHRLDKYIKILDRV 198
            D +L++PGRV+  +PRRL  G++    +    KE +    LWQL DI+L++S+ SHHRL+ YI+ LD+V
Sbjct:   47 DEKLSLPGRVFLVRPRRLGGGSSSIHEVNDGGKESLRAAVLWQLKDILLSRSLWSHHRLEGYIETLDKV 115          
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Match: A0A6T5V5A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5V5A5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.130e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 DDARLTVPGRVWFAKPRRLKNGATLARVMQ----GNLKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 198
            ++ +L++PG  +F KPRRL    +L  V      G ++  +LWQL DI+L+KSM  HH LD YI+ LDRV
Sbjct:  474 EETKLSIPGTKYFVKPRRLGGACSLHHVGDISGTGAIRASVLWQLDDILLSKSMWDHHGLDNYIQALDRV 543          
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Match: B7GAF2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAF2_PHATC)

HSP 1 Score: 64.3 bits (155), Expect = 1.970e-10
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 DDARLTVPGRVWFAKPRRLKNGATLARV---MQGN---LKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 198
            ++ARL VPGR +  +PRRL +  ++  V   ++G    L+  +LWQL+D++L+KS+  HH+L+ YI+ LDRV
Sbjct:  449 EEARLAVPGRAYLIRPRRLSHACSIHEVGAQLKGGREALRAAVLWQLNDVLLSKSLWKHHQLESYIQGLDRV 520          
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Match: A0A7S3ZRK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRK4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.650e-10
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 DDARLTVPGRVWFAKPRRLKNGAT-LARVMQGNLKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 198
            DD  L +PG V+F KPR   +GA  + R   G  +E++LWQL+D++L+KSML+H  LD YI  LDR+
Sbjct:  403 DDDELRLPGDVFFLKPRA--DGAVGVYRGGAGRAREELLWQLNDVLLSKSMLAHATLDAYISALDRI 467          
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Match: A0A7S2LJY6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LJY6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.860e-10
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    4 DARLTVPGRVWFAKPRRLKNGATLARVMQG------NLKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 198
            DA L VPGRV+  +PRR+  G++    + G      N +  +LWQL+D++L+KS+  HH    YI+ LDRV
Sbjct:  463 DAHLAVPGRVYLIRPRRIGGGSSSIHEVGGSIGGRENFRAAVLWQLNDVLLSKSLWKHHSQSSYIRSLDRV 533          
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Match: A0A7S2FE87_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FE87_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.070e-10
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    1 DDARLTVPGRVWFAKPRRLKNGATLARVMQGNLKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 198
            +D  L+ PG V+  KP R      +    +G + E +LWQLHDI+++KSML+HH L  Y++ LD V
Sbjct:  113 EDTLLSCPGVVYMLKP-RASGQVHMVTTKRGGIGESLLWQLHDILISKSMLAHHTLPAYVRCLDVV 177          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75846.17891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LI31_ECTSI6.470e-3595.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUE7_9STRA6.980e-2262.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DDN3_9STRA1.990e-1858.06Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1B8E3_9STRA1.330e-1246.97Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
K0SG86_THAOC9.170e-1244.93Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6T5V5A5_9STRA4.130e-1145.71Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
B7GAF2_PHATC1.970e-1043.06Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3ZRK4_9STRA3.650e-1049.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2LJY6_9STRA6.860e-1042.25Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2FE87_9STRA8.070e-1042.42Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75846contigM-pyrifera_M_contig75846:704..904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue8.7e-30
Seed eggNOG ortholog2880.D8LI31
Hectar predicted targeting categoryother localisation
EggNOG OGs2C0DA@1,2S938@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.0827491-CDS-M-pyrifera_M_contig75846:703..9041622816657.0827491-CDS-M-pyrifera_M_contig75846:703..904Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75846 704..904 -
1692278102.3546257-CDS-M-pyrifera_M_contig75846:703..9041692278102.3546257-CDS-M-pyrifera_M_contig75846:703..904Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75846 704..904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75846.17891.1prot_M-pyrifera_M_contig75846.17891.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75846 704..904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75846.17891.1

>prot_M-pyrifera_M_contig75846.17891.1 ID=prot_M-pyrifera_M_contig75846.17891.1|Name=mRNA_M-pyrifera_M_contig75846.17891.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
DDARLTVPGRVWFAKPRRLKNGATLARVMQGNLKEDMLWQLHDIMLTKSM
LSHHRLDKYIKILDRV*
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mRNA from alignment at M-pyrifera_M_contig75846:704..904-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75846.17891.1 ID=mRNA_M-pyrifera_M_contig75846.17891.1|Name=mRNA_M-pyrifera_M_contig75846.17891.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig75846:704..904- (Macrocystis pyrifera P11B4 male)
GACGACGCGCGACTCACGGTGCCGGGGCGGGTATGGTTTGCCAAGCCCCG GCGGCTGAAGAACGGCGCCACTCTCGCGCGCGTCATGCAGGGGAACCTGA AGGAGGACATGCTGTGGCAGCTGCACGACATCATGCTCACCAAGAGCATG CTTTCTCACCACCGCCTCGACAAGTACATCAAAATTCTGGACCGAGTCTA G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75846:704..904-

>mRNA_M-pyrifera_M_contig75846.17891.1 ID=mRNA_M-pyrifera_M_contig75846.17891.1|Name=mRNA_M-pyrifera_M_contig75846.17891.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig75846:704..904- (Macrocystis pyrifera P11B4 male)
GACGACGCGCGACTCACGGTGCCGGGGCGGGTATGGTTTGCCAAGCCCCG
GCGGCTGAAGAACGGCGCCACTCTCGCGCGCGTCATGCAGGGGAACCTGA
AGGAGGACATGCTGTGGCAGCTGCACGACATCATGCTCACCAAGAGCATG
CTTTCTCACCACCGCCTCGACAAGTACATCAAAATTCTGGACCGAGTCTA
GGACGACGCGCGACTCACGGTGCCGGGGCGGGTATGGTTTGCCAAGCCCC
GGCGGCTGAAGAACGGCGCCACTCTCGCGCGCGTCATGCAGGGGAACCTG
AAGGAGGACATGCTGTGGCAGCTGCACGACATCATGCTCACCAAGAGCAT
GCTTTCTCACCACCGCCTCGACAAGTACATCAAAATTCTGGACCGAGTCT
AG
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