mRNA_M-pyrifera_M_contig75844.17890.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75844.17890.1
Unique NamemRNA_M-pyrifera_M_contig75844.17890.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75844.17890.1 vs. uniprot
Match: D7FJE4_ECTSI (Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE4_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.270e-21
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 RDFLTYTMLPEADFDALMLKEAMDGFGTNEGLIINILAPQSNARILAAKARHDQK 165
            +DFL+Y +LPEADFDALMLK+AMDG GTNEGLII+ LAP SNARILAAKARHDQK
Sbjct:  438 KDFLSYVLLPEADFDALMLKKAMDGLGTNEGLIISTLAPLSNARILAAKARHDQK 492
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BLAST of mRNA_M-pyrifera_M_contig75844.17890.1 vs. uniprot
Match: A0A6H5L407_9PHAE (Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L407_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.270e-21
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 RDFLTYTMLPEADFDALMLKEAMDGFGTNEGLIINILAPQSNARILAAKARHDQK 165
            +DFL+Y +LPEADFDALMLK+AMDG GTNEGLII+ LAP SNARILAAKARHDQK
Sbjct:  417 KDFLSYVLLPEADFDALMLKKAMDGLGTNEGLIISTLAPLSNARILAAKARHDQK 471
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BLAST of mRNA_M-pyrifera_M_contig75844.17890.1 vs. uniprot
Match: A0A836CML3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.910e-9
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    4 DFLTYTMLPEADFDALMLKEAMDGFGTNEGLIINILAPQSNARILAAKARHDQK 165
            D L   +LP  DFDA+M+K A DG GTNE ++I +LAP++NARI   K ++D +
Sbjct:  309 DLLVGAVLPYDDFDAIMVKRACDGVGTNEQILIELLAPRANARIRGMKLKYDAR 362
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BLAST of mRNA_M-pyrifera_M_contig75844.17890.1 vs. uniprot
Match: A0A836CCJ5_9STRA (Annexin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCJ5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.510e-9
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 RDFLTYTMLPEADFDALMLKEAMDGFGTNEGLIINILAPQSNARILAAKARHDQK 165
            +D L   +LP  +FDA ++K+A DG GTNE ++I  LAP+SN RI A KA++D K
Sbjct:  450 QDLLMAIVLPYDEFDAAIIKKACDGLGTNEQVLIECLAPRSNGRIRALKAKYDAK 504
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BLAST of mRNA_M-pyrifera_M_contig75844.17890.1 vs. uniprot
Match: A0A835YT40_9STRA (Anxa6 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT40_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.320e-8
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 RDFLTYTMLPEADFDALMLKEAMDGFGTNEGLIINILAPQSNARILAAKARHDQK 165
            R  + Y ++P  D DA+++K+A DG GT+E L++  LAP SN+R++A KA+ + K
Sbjct:  438 RQLMEYALMPTDDLDAMVVKQACDGLGTDETLLVEALAPLSNSRMIALKAKFEAK 492
[Close]
BLAST of mRNA_M-pyrifera_M_contig75844.17890.1 vs. uniprot
Match: D8LG01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG01_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 3.270e-5
Identity = 21/53 (39.62%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 RDFLTYTMLPEADFDALMLKEAMDGFGTNEGLIINILAPQSNARILAAKARHD 159
            + F+ YT +   +FDAL++K+AM G GT+E ++I +L  + NA I AA+  ++
Sbjct:  349 KTFMVYTQMETQEFDALLMKKAMAGIGTDEDIMIMLLTTRDNAAIAAAQTYYE 401
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75844.17890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FJE4_ECTSI1.270e-2183.64Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L407_9PHAE1.270e-2183.64Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
A0A836CML3_9STRA6.910e-950.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CCJ5_9STRA9.510e-950.91Annexin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A835YT40_9STRA3.320e-843.64Anxa6 protein n=1 Tax=Tribonema minus TaxID=303371... [more]
D8LG01_ECTSI3.270e-539.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75844contigM-pyrifera_M_contig75844:773..937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue5.7e-15
Seed eggNOG ortholog2880.D7FJE4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.calcium-dependent phospholipid binding
EggNOG OGsKOG0819@1,KOG0819@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size165
Cds size144
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.0377038-UTR-M-pyrifera_M_contig75844:772..7931622816657.0377038-UTR-M-pyrifera_M_contig75844:772..793Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75844 773..793 +
1692278102.3309507-UTR-M-pyrifera_M_contig75844:772..7931692278102.3309507-UTR-M-pyrifera_M_contig75844:772..793Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75844 773..793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.048983-CDS-M-pyrifera_M_contig75844:793..9371622816657.048983-CDS-M-pyrifera_M_contig75844:793..937Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75844 794..937 +
1692278102.3452969-CDS-M-pyrifera_M_contig75844:793..9371692278102.3452969-CDS-M-pyrifera_M_contig75844:793..937Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75844 794..937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75844.17890.1prot_M-pyrifera_M_contig75844.17890.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75844 794..937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75844.17890.1

>prot_M-pyrifera_M_contig75844.17890.1 ID=prot_M-pyrifera_M_contig75844.17890.1|Name=mRNA_M-pyrifera_M_contig75844.17890.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
MLPEADFDALMLKEAMDGFGTNEGLIINILAPQSNARILAAKARHDQK
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mRNA from alignment at M-pyrifera_M_contig75844:773..937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75844.17890.1 ID=mRNA_M-pyrifera_M_contig75844.17890.1|Name=mRNA_M-pyrifera_M_contig75844.17890.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig75844:773..937+ (Macrocystis pyrifera P11B4 male)
AGAGACTTCTTGACGTACACCATGCTCCCCGAGGCCGACTTCGACGCCCT
CATGCTGAAGGAGGCCATGGACGGGTTCGGGACGAACGAGGGGCTCATCA
TCAACATCCTGGCGCCGCAGAGCAACGCCCGCATTCTAGCCGCCAAGGCC
AGGCACGACCAAAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75844:773..937+

>mRNA_M-pyrifera_M_contig75844.17890.1 ID=mRNA_M-pyrifera_M_contig75844.17890.1|Name=mRNA_M-pyrifera_M_contig75844.17890.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig75844:773..937+ (Macrocystis pyrifera P11B4 male)
ATGCTCCCCGAGGCCGACTTCGACGCCCTCATGCTGAAGGAGGCCATGGA
CGGGTTCGGGACGAACGAGGGGCTCATCATCAACATCCTGGCGCCGCAGA
GCAACGCCCGCATTCTAGCCGCCAAGGCCAGGCACGACCAAAAGATGCTC
CCCGAGGCCGACTTCGACGCCCTCATGCTGAAGGAGGCCATGGACGGGTT
CGGGACGAACGAGGGGCTCATCATCAACATCCTGGCGCCGCAGAGCAACG
CCCGCATTCTAGCCGCCAAGGCCAGGCACGACCAAAAG
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