mRNA_M-pyrifera_M_contig75839.17889.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75839.17889.1
Unique NamemRNA_M-pyrifera_M_contig75839.17889.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75839.17889.1 vs. uniprot
Match: D7G7R5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7R5_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.020e-62
Identity = 95/137 (69.34%), Postives = 111/137 (81.02%), Query Frame = 1 
Query:    1 TCNVDRYNVLTGEWVELDTVQETHCYSDHAGVASGNDTIYLFGGYTEDYQARNTVVKVEISGVDELSFSTVEPMGIARGDHACVGLPASAEALCIGGFTEADFEYTILRSVERFDMETEQWEDRADMVNPRADFGAG 411
            TCNVDRY+VLTGEW +LD  Q T C+SDH+GVAS + TIYLFGGY +DY A+ TVVKVE+S  D ++FST E M I RGDH+C+ LPA+ E  CIGGFTE ++EYTIL SVERFDMETEQWE +A MV PRADFGAG
Sbjct:  106 TCNVDRYSVLTGEWTQLDVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKVEVSSDDTMTFSTTEAMTIKRGDHSCIRLPATTEVFCIGGFTEENWEYTILSSVERFDMETEQWESKASMVIPRADFGAG 242
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BLAST of mRNA_M-pyrifera_M_contig75839.17889.1 vs. uniprot
Match: A8IWE8_CHLRE (Predicted protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A8IWE8_CHLRE)

HSP 1 Score: 57.0 bits (136), Expect = 8.640e-7
Identity = 45/148 (30.41%), Postives = 65/148 (43.92%), Query Frame = 1 
Query:   19 YNVLTGEWVELDTVQETHCYSDHAGVASGNDTIYLFGGYTEDYQARNTVVKVEISGVDELSFSTVEPM------GIARGDHACVGLPASAEALCIGGFTEADFE-------------YTILRSVERFDMETEQWEDRADMVNPRADFG 405
            YN+    W   D +         A VA     +Y+FGGY E + +  TV +++ +     S +   P+       ++RGD   V +  +  A  +GG TE                 Y  LRSVE FD  ++ W  RADM+NPR DFG
Sbjct:  194 YNISGDSWSFGDKLSRPRIDPCGAAVAG---KVYVFGGYNESFGSLATVEELDPATATATSPAVWAPLPATGNLAVSRGDCRAVAVDKTIYA--VGG-TEYYINPNKSCDGDLWVNCYRFLRSVEAFDPVSKTWSPRADMINPRGDFG 335
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75839.17889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7R5_ECTSI1.020e-6269.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A8IWE8_CHLRE8.640e-730.41Predicted protein n=2 Tax=Chlamydomonas TaxID=3052... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75839contigM-pyrifera_M_contig75839:78..876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.2
Seed ortholog evalue4.8e-51
Seed eggNOG ortholog2880.D7G7R5
KEGG koko:K10442,ko:K10443,ko:K10447
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG4441@1,KOG4441@2759
Ec32 ortholog descriptionGalactose oxidase, beta-propeller
Ec32 orthologEc-06_000640.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons2
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.9800215-CDS-M-pyrifera_M_contig75839:77..3051622816656.9800215-CDS-M-pyrifera_M_contig75839:77..305Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75839 78..305 +
1692278102.307442-CDS-M-pyrifera_M_contig75839:77..3051692278102.307442-CDS-M-pyrifera_M_contig75839:77..305Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75839 78..305 +
1622816656.996559-CDS-M-pyrifera_M_contig75839:690..8761622816656.996559-CDS-M-pyrifera_M_contig75839:690..876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75839 691..876 +
1692278102.3195798-CDS-M-pyrifera_M_contig75839:690..8761692278102.3195798-CDS-M-pyrifera_M_contig75839:690..876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75839 691..876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75839.17889.1prot_M-pyrifera_M_contig75839.17889.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75839 78..876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75839.17889.1

>prot_M-pyrifera_M_contig75839.17889.1 ID=prot_M-pyrifera_M_contig75839.17889.1|Name=mRNA_M-pyrifera_M_contig75839.17889.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
TCNVDRYNVLTGEWVELDTVQETHCYSDHAGVASGNDTIYLFGGYTEDYQ
ARNTVVKVEISGVDELSFSTVEPMGIARGDHACVGLPASAEALCIGGFTE
ADFEYTILRSVERFDMETEQWEDRADMVNPRADFGAG*
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mRNA from alignment at M-pyrifera_M_contig75839:78..876+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75839.17889.1 ID=mRNA_M-pyrifera_M_contig75839.17889.1|Name=mRNA_M-pyrifera_M_contig75839.17889.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=799bp|location=Sequence derived from alignment at M-pyrifera_M_contig75839:78..876+ (Macrocystis pyrifera P11B4 male)
ACTTGCAACGTAGATCGATACAACGTACTCACGGGCGAGTGGGTCGAGCT
CGACACGGTCCAAGAGACACATTGCTATTCCGACCATGCCGGAGTGGCGA
GCGGGAACGACACGATCTATCTGTTCGGCGGCTACACGGAAGATTACCAG
GCTCGAAACACGGTGGTCAAGGTCGAGATTTCTGGCGTCGATGAGCTCTC
TTTTTCCACGGTGGAGCCGATGGGCATCGTGAGTTGTTTTCGCGGTTGTT
TTTGGCTTGTGATGTTTATCCTCGGGCTGCCTGCATCTTCGCGTCTATGA
AGAGCAGTGCGGAAAATACTCTGCCTCGATCGAGATCGTCGTTACCTACG
AGTACTTGGTATTTCTTTCTGTGGGCCATCTGTTCCGCTGCCGATCAAAC
TGTTAATGTCCCTCACGTGACGTATACGTATATTATCACTGTATATACGC
TGCGTGCGGAACGTTAAACGTACACCACTACTGAATAACTGGTATATCCT
GCGCAATTATTCGTACTGCGAGGATTTCATTGAAATCCCGATAATGGTCA
TTGGTTTTTAACCCCACACTCTAACGTTTCCTTGTTGTTTTCCTTAATTC
GGTCGGTTCTCAGGCACGAGGGGACCACGCGTGCGTCGGTCTGCCCGCCA
GCGCAGAGGCGCTGTGTATCGGCGGCTTCACGGAGGCCGATTTCGAATAC
ACTATTCTGAGAAGCGTTGAGCGCTTTGACATGGAAACGGAACAATGGGA
GGACAGGGCCGACATGGTCAACCCCCGTGCGGATTTCGGCGCAGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75839:78..876+

>mRNA_M-pyrifera_M_contig75839.17889.1 ID=mRNA_M-pyrifera_M_contig75839.17889.1|Name=mRNA_M-pyrifera_M_contig75839.17889.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig75839:78..876+ (Macrocystis pyrifera P11B4 male)
ACTTGCAACGTAGATCGATACAACGTACTCACGGGCGAGTGGGTCGAGCT
CGACACGGTCCAAGAGACACATTGCTATTCCGACCATGCCGGAGTGGCGA
GCGGGAACGACACGATCTATCTGTTCGGCGGCTACACGGAAGATTACCAG
GCTCGAAACACGGTGGTCAAGGTCGAGATTTCTGGCGTCGATGAGCTCTC
TTTTTCCACGGTGGAGCCGATGGGCATCACTTGCAACGTAGATCGATACA
ACGTACTCACGGGCGAGTGGGTCGAGCTCGACACGGTCCAAGAGACACAT
TGCTATTCCGACCATGCCGGAGTGGCGAGCGGGAACGACACGATCTATCT
GTTCGGCGGCTACACGGAAGATTACCAGGCTCGAAACACGGTGGTCAAGG
TCGAGATTTCTGGCGTCGATGAGCTCTCTTTTTCCACGGTGGAGCCGATG
GGCATCGCACGAGGGGACCACGCGTGCGTCGGTCTGCCCGCCAGCGCAGA
GGCGCTGTGTATCGGCGGCTTCACGGAGGCCGATTTCGAATACACTATTC
TGAGAAGCGTTGAGCGCTTTGACATGGAAACGGAACAATGGGAGGACAGG
GCCGACATGGTCAACCCCCGTGCGGATTTCGGCGCAGGGTGAGCACGAGG
GGACCACGCGTGCGTCGGTCTGCCCGCCAGCGCAGAGGCGCTGTGTATCG
GCGGCTTCACGGAGGCCGATTTCGAATACACTATTCTGAGAAGCGTTGAG
CGCTTTGACATGGAAACGGAACAATGGGAGGACAGGGCCGACATGGTCAA
CCCCCGTGCGGATTTCGGCGCAGGGTGA
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